Wall clock time and date at job start Tue Mar 31 2020 21:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 S 1.65600 * 119.99915 * 240.00242 * 12 2 1 15 15 O 1.42101 * 106.39901 * 203.53726 * 14 12 2 16 16 O 1.42096 * 106.40513 * 336.45952 * 14 12 2 17 17 C 1.76201 * 107.21772 * 90.00280 * 14 12 2 18 18 C 1.38782 * 120.31670 * 269.71692 * 17 14 12 19 19 C 1.38413 * 118.50493 * 179.78189 * 18 17 14 20 20 C 1.39289 * 119.07175 * 0.49176 * 19 18 17 21 21 C 1.48433 * 119.72570 * 179.72118 * 20 19 18 22 22 N 1.34058 * 126.67132 * 0.05569 * 21 20 19 23 23 N 1.28993 * 107.26522 * 179.97438 * 22 21 20 24 24 N 1.28736 * 108.94495 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.33626 * 179.97438 * 24 23 22 26 26 N 1.28875 * 109.31902 * 359.76371 * 24 23 22 27 27 N 1.32628 * 120.55512 * 359.75153 * 20 19 18 28 28 C 1.31763 * 121.61624 * 359.97438 * 27 20 19 29 29 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 30 30 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 31 31 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 34 34 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 35 35 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 36 36 H 1.08000 * 120.74471 * 0.02562 * 18 17 14 37 37 H 1.07997 * 120.46440 * 180.23987 * 19 18 17 38 38 H 1.08003 * 119.55449 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 6 1.8960 0.8536 3.4711 18 6 1.4099 2.1380 3.2708 19 6 0.5649 2.6805 4.2233 20 6 0.2414 1.9268 5.3491 21 6 -0.6586 2.4967 6.3828 22 7 -1.2296 3.7095 6.3666 23 7 -1.9336 3.8156 7.4422 24 7 -1.8256 2.7274 8.1214 25 1 -2.2577 2.5517 8.9719 26 7 -1.0570 1.9064 7.4920 27 7 0.7313 0.7042 5.5056 28 6 1.5333 0.1619 4.6118 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9028 -0.5285 -4.4375 33 1 2.4157 -2.7377 0.9718 34 1 1.6237 -2.2852 2.5003 35 1 0.6904 -2.3002 0.9847 36 1 1.6818 2.7000 2.3895 37 1 0.1652 3.6759 4.0975 38 1 1.9133 -0.8361 4.7731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:02 Heat of formation + Delta-G solvation = 82.509984 kcal Electronic energy + Delta-G solvation = -26929.099533 eV Core-core repulsion = 22936.865744 eV Total energy + Delta-G solvation = -3992.233789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.65660 -41.40974 -38.45180 -38.07995 -36.95692 -35.69360 -34.94665 -34.50676 -33.80431 -32.28184 -31.77810 -27.33743 -26.97075 -26.74561 -26.02766 -24.59938 -23.51295 -22.61967 -20.49411 -20.14362 -19.05845 -18.96681 -18.33891 -18.28694 -18.06818 -17.71758 -17.09100 -16.32433 -15.74739 -15.48849 -15.32037 -15.17532 -15.03091 -14.61861 -14.45117 -14.29296 -14.13043 -13.82076 -13.48979 -13.45000 -13.21711 -13.12350 -12.91239 -12.74289 -12.62746 -12.46619 -12.37212 -12.30468 -12.09576 -11.96510 -11.42856 -11.34086 -11.26459 -10.94156 -10.71508 -10.45442 -9.75792 -8.25397 -6.30726 -1.12652 -0.66243 -0.05988 -0.01800 0.84045 1.21738 1.35451 1.43538 1.51776 1.95048 2.12436 2.36306 2.40612 2.73903 2.76992 3.09641 3.11244 3.46912 3.68059 3.71988 3.84600 3.92783 3.99956 4.24996 4.47912 4.48233 4.60276 4.66879 4.67569 4.72424 4.82276 4.90863 5.17690 5.18977 5.22876 5.48176 5.52271 5.61789 5.83310 6.36260 6.37064 6.74919 6.93294 7.33928 8.91184 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.003445 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.346268 B = 8125.193248 C = 9034.261206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.239 3.761 3 H 0.056 0.944 4 C -0.524 4.524 5 H 0.043 0.957 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.935 3.065 9 H -0.257 1.257 10 H -0.237 1.237 11 H -0.301 1.301 12 N -0.980 5.980 13 C 0.096 3.904 14 S 2.701 3.299 15 O -0.973 6.973 16 O -0.979 6.979 17 C -0.717 4.717 18 C 0.027 3.973 19 C -0.139 4.139 20 C 0.239 3.761 21 C 0.197 3.803 22 N -0.268 5.268 23 N -0.046 5.046 24 N -0.194 5.194 25 H 0.498 0.502 26 N -0.261 5.261 27 N -0.479 5.479 28 C 0.204 3.796 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.266 0.734 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 7.071 23.420 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.133 3.867 3 H 0.074 0.926 4 C -0.564 4.564 5 H 0.062 0.938 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.761 3.239 9 H -0.183 1.183 10 H -0.160 1.160 11 H -0.229 1.229 12 N -0.819 5.819 13 C -0.049 4.049 14 S 2.791 3.209 15 O -0.963 6.963 16 O -0.969 6.969 17 C -0.806 4.806 18 C 0.000 4.000 19 C -0.162 4.162 20 C 0.100 3.900 21 C -0.084 4.084 22 N -0.142 5.142 23 N -0.041 5.041 24 N -0.046 5.046 25 H 0.358 0.642 26 N -0.114 5.114 27 N -0.189 5.189 28 C 0.044 3.956 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.191 0.809 37 H 0.198 0.802 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -9.982 7.097 24.295 27.208 hybrid contribution -0.484 0.400 -0.884 1.084 sum -10.465 7.497 23.411 26.718 Atomic orbital electron populations 1.22420 0.96537 1.02661 1.00464 1.18959 0.92264 0.93051 0.82400 0.92615 1.21433 1.31484 1.13182 0.90291 0.93843 1.25774 0.97336 0.99858 0.95280 1.70032 1.47440 1.42448 0.98658 0.86075 0.79514 0.80257 0.78044 1.18276 1.16023 1.22945 1.57090 1.70473 1.20976 1.33392 1.21502 1.02083 0.79601 1.01722 1.01573 0.73754 0.72907 0.72619 1.93527 1.68527 1.59388 1.74845 1.93543 1.74164 1.56966 1.72242 1.32153 1.22881 1.08281 1.17325 1.21662 0.88550 0.91499 0.98283 1.22292 0.98325 1.02862 0.92674 1.18249 0.91594 0.90268 0.89896 1.23075 1.01320 0.90019 0.93960 1.76101 1.08733 1.16231 1.13137 1.78911 1.16182 1.09191 0.99786 1.47927 1.29473 1.06599 1.20631 0.64202 1.75117 1.08860 1.20131 1.07322 1.67649 1.10181 1.10749 1.30342 1.22819 0.87686 0.99444 0.85615 0.91282 0.93829 0.91375 0.92474 0.94001 0.88930 0.89889 0.80888 0.80166 0.78521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.76 8.65 71.98 0.62 -5.14 16 2 C 0.24 10.07 2.21 44.24 0.10 10.17 16 3 H 0.06 2.41 5.97 -2.38 -0.01 2.39 16 4 C -0.52 -28.15 8.95 25.60 0.23 -27.93 16 5 H 0.04 2.61 7.89 -2.91 -0.02 2.58 16 6 C 0.02 0.87 5.45 84.66 0.46 1.33 16 7 N -0.95 -57.38 13.96 21.45 0.30 -57.08 16 8 Si 0.94 41.62 24.37 68.60 1.67 43.29 16 9 H -0.26 -10.57 6.87 99.48 0.68 -9.89 16 10 H -0.24 -9.44 6.53 99.48 0.65 -8.79 16 11 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 12 N -0.98 -35.27 3.06 -520.42 -1.59 -36.86 16 13 C 0.10 2.94 9.53 127.77 1.22 4.16 16 14 S 2.70 90.56 5.65 -56.49 -0.32 90.24 16 15 O -0.97 -34.29 16.37 -128.00 -2.10 -36.39 16 16 O -0.98 -39.14 15.91 -128.00 -2.04 -41.18 16 17 C -0.72 -18.59 5.99 22.40 0.13 -18.46 16 18 C 0.03 0.61 9.64 22.44 0.22 0.83 16 19 C -0.14 -2.84 9.74 22.56 0.22 -2.62 16 20 C 0.24 5.49 6.75 42.00 0.28 5.77 16 21 C 0.20 4.21 8.03 137.37 1.10 5.31 16 22 N -0.27 -5.45 12.21 -52.19 -0.64 -6.09 16 23 N -0.05 -0.73 13.47 37.02 0.50 -0.23 16 24 N -0.19 -2.14 7.90 37.02 0.29 -1.85 16 25 H 0.50 0.24 8.96 -347.53 -3.12 -2.87 16 26 N -0.26 -4.76 12.38 -52.14 -0.65 -5.41 16 27 N -0.48 -11.76 10.29 -184.82 -1.90 -13.67 16 28 C 0.20 4.86 10.68 84.71 0.90 5.76 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.63 3.27 -2.39 -0.01 1.62 16 31 H 0.07 2.32 6.66 -2.39 -0.02 2.30 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.09 2.10 7.79 -2.39 -0.02 2.08 16 35 H 0.08 2.40 6.43 -2.38 -0.02 2.39 16 36 H 0.17 3.60 7.70 -2.91 -0.02 3.58 16 37 H 0.18 2.80 7.88 -2.91 -0.02 2.77 16 38 H 0.20 3.84 7.62 -2.91 -0.02 3.81 16 Total: -1.00 -76.35 336.48 -3.02 -79.38 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -2.05 Total: 6.66 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 5.49 Total: -20.81 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -3.69 Total: -121.20 kcal Atomic # 8 Polarization: -73.43 SS G_CDS: -4.13 Total: -77.56 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.67 Total: 43.29 kcal Atomic # 16 Polarization: 90.56 SS G_CDS: -0.32 Total: 90.24 kcal Total: -76.35 -3.02 -79.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.885 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds