Wall clock time and date at job start Tue Mar 31 2020 21:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.46500 * 119.99935 * 299.99945 * 12 2 1 14 14 S 1.65603 * 120.00062 * 120.00453 * 12 2 1 15 15 O 1.42096 * 106.40136 * 203.53682 * 14 12 2 16 16 O 1.42104 * 106.39896 * 336.45754 * 14 12 2 17 17 C 1.76202 * 107.21995 * 89.99479 * 14 12 2 18 18 C 1.38765 * 120.32047 * 269.72741 * 17 14 12 19 19 C 1.38424 * 118.50446 * 179.78048 * 18 17 14 20 20 C 1.39289 * 119.06944 * 0.49076 * 19 18 17 21 21 C 1.48429 * 119.71943 * 179.72652 * 20 19 18 22 22 N 1.34060 * 126.67933 * 0.04435 * 21 20 19 23 23 N 1.28985 * 107.26736 * 179.97438 * 22 21 20 24 24 N 1.28736 * 108.94817 * 0.02562 * 23 22 21 25 25 H 0.97002 * 125.33831 * 179.97438 * 24 23 22 26 26 N 1.28876 * 109.32018 * 359.76434 * 24 23 22 27 27 N 1.32621 * 120.55375 * 359.74543 * 20 19 18 28 28 C 1.31767 * 121.62183 * 0.02562 * 27 20 19 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46877 * 90.00284 * 13 12 2 34 34 H 1.09004 * 109.46845 * 210.00304 * 13 12 2 35 35 H 1.08994 * 109.47249 * 330.00535 * 13 12 2 36 36 H 1.08003 * 120.75128 * 359.97438 * 18 17 14 37 37 H 1.08000 * 120.46443 * 180.23396 * 19 18 17 38 38 H 1.07991 * 119.55458 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8229 -0.5647 -3.5258 16 8 2.6905 1.4972 -2.1192 17 6 4.6446 -0.1183 -1.7879 18 6 5.2484 0.7807 -0.9202 19 6 6.5637 0.5594 -0.5499 20 6 7.2353 -0.5462 -1.0663 21 6 8.6479 -0.7939 -0.6836 22 7 9.3969 -0.0477 0.1407 23 7 10.5597 -0.6018 0.2084 24 7 10.5655 -1.6534 -0.5342 25 1 11.3212 -2.2490 -0.6575 26 7 9.4086 -1.7931 -1.0847 27 7 6.6234 -1.3792 -1.8973 28 6 5.3709 -1.1946 -2.2625 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7094 1.1619 3.4844 33 1 0.7376 -2.1444 -1.9992 34 1 2.4629 -2.5819 -1.9862 35 1 1.5294 -2.5968 -0.4707 36 1 4.7035 1.6320 -0.5399 37 1 7.0634 1.2368 0.1267 38 1 4.9055 -1.8937 -2.9414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:06 Heat of formation + Delta-G solvation = 75.258198 kcal Electronic energy + Delta-G solvation = -27065.606126 eV Core-core repulsion = 23073.057876 eV Total energy + Delta-G solvation = -3992.548250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.66375 -41.36651 -38.37649 -37.88257 -36.92756 -35.70017 -34.93793 -34.49866 -33.76929 -32.26433 -30.89162 -27.22538 -26.99375 -26.74296 -26.02484 -24.58205 -23.49108 -22.55528 -20.50305 -20.15273 -18.93188 -18.53081 -18.34875 -18.30143 -17.99947 -17.74001 -16.92099 -16.21797 -15.74117 -15.43922 -15.20025 -15.17695 -14.89301 -14.51188 -14.42237 -14.24737 -13.70554 -13.49631 -13.39954 -13.20174 -13.12692 -12.96371 -12.69908 -12.68109 -12.62930 -12.46251 -12.36775 -12.30271 -12.20260 -12.09120 -11.85897 -11.29580 -11.15209 -10.90420 -10.46913 -10.42264 -9.64670 -8.07553 -6.21302 -1.08500 -0.55632 -0.03310 -0.01886 0.84558 1.21346 1.45137 1.47537 1.53031 1.99768 2.12886 2.40631 2.47433 2.75679 2.77476 3.17811 3.21428 3.47473 3.71952 3.74091 3.85624 3.98412 4.14240 4.24368 4.48092 4.64066 4.69501 4.78124 4.87192 5.04751 5.07785 5.20732 5.22266 5.31597 5.48233 5.64723 5.72500 5.87831 6.12792 6.31706 6.37437 6.87306 6.92427 7.48255 8.96390 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.004362 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.940045 B = 6417.341931 C = 8136.483986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.270 3.730 3 H 0.037 0.963 4 C -0.532 4.532 5 H 0.065 0.935 6 C 0.026 3.974 7 N -0.911 5.911 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.983 5.983 13 C 0.092 3.908 14 S 2.704 3.296 15 O -0.970 6.970 16 O -0.982 6.982 17 C -0.717 4.717 18 C 0.031 3.969 19 C -0.144 4.144 20 C 0.235 3.765 21 C 0.198 3.802 22 N -0.271 5.271 23 N -0.046 5.046 24 N -0.194 5.194 25 H 0.498 0.502 26 N -0.259 5.259 27 N -0.479 5.479 28 C 0.200 3.800 29 H 0.024 0.976 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.175 0.825 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.564 -5.892 -6.781 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.054 0.946 4 C -0.571 4.571 5 H 0.083 0.917 6 C -0.174 4.174 7 N -0.550 5.550 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.823 5.823 13 C -0.053 4.053 14 S 2.794 3.206 15 O -0.961 6.961 16 O -0.973 6.973 17 C -0.805 4.805 18 C 0.004 3.996 19 C -0.167 4.167 20 C 0.097 3.903 21 C -0.083 4.083 22 N -0.144 5.144 23 N -0.041 5.041 24 N -0.046 5.046 25 H 0.358 0.642 26 N -0.112 5.112 27 N -0.189 5.189 28 C 0.040 3.960 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.182 0.818 37 H 0.192 0.808 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 15.272 -5.918 -7.365 17.958 hybrid contribution 0.267 -0.225 1.533 1.573 sum 15.539 -6.143 -5.831 17.698 Atomic orbital electron populations 1.21946 0.97471 1.00242 1.00260 1.18505 0.92217 0.91801 0.80854 0.94553 1.21581 1.31642 1.13136 0.90786 0.91693 1.25507 0.95174 0.95506 1.01255 1.69971 1.37097 1.23617 1.24355 0.85809 0.78515 0.78986 0.79470 1.20306 1.21284 1.19650 1.57339 1.63130 1.22937 1.38924 1.21535 1.01169 0.79989 1.02605 1.01510 0.73126 0.72990 0.72973 1.93521 1.86143 1.75524 1.40879 1.93533 1.84106 1.33008 1.86604 1.32268 1.27790 1.06862 1.13623 1.21559 0.93960 0.95880 0.88209 1.22256 0.94964 0.98295 1.01138 1.18196 0.87887 0.91512 0.92727 1.23041 0.95816 0.91224 0.98176 1.76107 0.97427 1.24002 1.16875 1.78891 1.15214 0.97939 1.12012 1.47911 1.11295 1.18956 1.26397 0.64159 1.75107 0.93735 1.22613 1.19790 1.67609 1.10997 1.28067 1.12257 1.22830 0.88058 0.92477 0.92602 0.95691 0.93734 0.91101 0.92659 0.92019 0.90010 0.90531 0.81789 0.80753 0.78268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.27 12.35 2.62 44.25 0.12 12.46 16 3 H 0.04 1.85 6.91 -2.39 -0.02 1.83 16 4 C -0.53 -25.82 7.99 25.60 0.20 -25.61 16 5 H 0.06 3.06 7.33 -2.91 -0.02 3.04 16 6 C 0.03 1.31 5.30 84.66 0.45 1.76 16 7 N -0.91 -48.48 11.32 21.45 0.24 -48.24 16 8 Si 0.95 40.61 29.54 68.60 2.03 42.64 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 N -0.98 -36.99 3.06 -520.45 -1.59 -38.59 16 13 C 0.09 2.84 9.28 127.77 1.19 4.03 16 14 S 2.70 96.02 5.65 -56.49 -0.32 95.70 16 15 O -0.97 -34.11 16.37 -128.00 -2.10 -36.20 16 16 O -0.98 -40.77 15.91 -128.00 -2.04 -42.81 16 17 C -0.72 -22.73 5.99 22.40 0.13 -22.60 16 18 C 0.03 0.95 9.64 22.44 0.22 1.16 16 19 C -0.14 -4.04 9.74 22.57 0.22 -3.82 16 20 C 0.24 6.85 6.75 42.00 0.28 7.13 16 21 C 0.20 5.24 8.03 137.36 1.10 6.35 16 22 N -0.27 -6.84 12.21 -52.19 -0.64 -7.48 16 23 N -0.05 -0.91 13.47 37.02 0.50 -0.41 16 24 N -0.19 -2.82 7.90 37.02 0.29 -2.53 16 25 H 0.50 1.75 8.96 -347.52 -3.12 -1.37 16 26 N -0.26 -5.77 12.38 -52.14 -0.65 -6.41 16 27 N -0.48 -14.28 10.29 -184.83 -1.90 -16.18 16 28 C 0.20 5.76 10.68 84.71 0.90 6.67 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 1.85 7.67 -2.39 -0.02 1.83 16 31 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 32 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 2.03 7.79 -2.38 -0.02 2.01 16 35 H 0.08 2.46 7.02 -2.39 -0.02 2.44 16 36 H 0.16 4.98 7.70 -2.91 -0.02 4.95 16 37 H 0.18 4.12 7.88 -2.91 -0.02 4.10 16 38 H 0.20 4.63 7.62 -2.92 -0.02 4.61 16 Total: -1.00 -66.85 343.97 -2.68 -69.53 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -1.98 Total: 9.06 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 5.46 Total: -18.08 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -3.75 Total: -119.84 kcal Atomic # 8 Polarization: -74.88 SS G_CDS: -4.13 Total: -79.01 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 96.02 SS G_CDS: -0.32 Total: 95.70 kcal Total: -66.85 -2.68 -69.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.791 kcal (2) G-P(sol) polarization free energy of solvation -66.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds