Wall clock time and date at job start Tue Mar 31 2020 21:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47160 * 2 1 4 4 C 1.46499 * 119.99905 * 274.99627 * 3 2 1 5 5 C 1.50699 * 109.47089 * 275.00042 * 4 3 2 6 6 H 1.07997 * 119.99930 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99909 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99689 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00091 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46961 * 89.99984 * 9 7 5 11 11 H 1.48501 * 109.47316 * 209.99941 * 9 7 5 12 12 H 1.48501 * 109.47154 * 330.00010 * 9 7 5 13 13 S 1.65598 * 120.00086 * 94.99922 * 3 2 1 14 14 O 1.42101 * 106.40505 * 156.45682 * 13 3 2 15 15 O 1.42103 * 106.40351 * 23.53757 * 13 3 2 16 16 C 1.76203 * 107.22009 * 270.00110 * 13 3 2 17 17 C 1.38776 * 120.32202 * 89.99699 * 16 13 3 18 18 C 1.38414 * 118.50605 * 180.02562 * 17 16 13 19 19 C 1.39291 * 119.07280 * 0.02562 * 18 17 16 20 20 C 1.48429 * 119.72777 * 179.97438 * 19 18 17 21 21 N 1.34064 * 126.67199 * 0.02947 * 20 19 18 22 22 N 1.28990 * 107.26616 * 179.97438 * 21 20 19 23 23 N 1.28733 * 108.94492 * 359.97438 * 22 21 20 24 24 H 0.96995 * 125.33767 * 180.02562 * 23 22 21 25 25 N 1.28871 * 109.32168 * 0.02562 * 23 22 21 26 26 N 1.32631 * 120.55042 * 0.27398 * 19 18 17 27 27 C 1.31763 * 121.61926 * 359.43546 * 26 19 18 28 28 H 1.08996 * 109.47575 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47361 * 299.99967 * 1 2 3 30 30 H 1.08997 * 109.47202 * 59.99975 * 1 2 3 31 31 H 1.08996 * 109.47063 * 239.99697 * 2 1 3 32 32 H 1.09008 * 109.46879 * 119.99651 * 2 1 3 33 33 H 1.09001 * 109.47197 * 35.00205 * 4 3 2 34 34 H 1.09003 * 109.46782 * 155.00278 * 4 3 2 35 35 H 0.96999 * 119.99709 * 179.97438 * 8 7 5 36 36 H 1.07995 * 120.74299 * 0.02562 * 17 16 13 37 37 H 1.08001 * 120.46409 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.55502 * 180.26617 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4949 1.7887 -1.8822 6 1 4.1721 1.1110 -1.3838 7 6 3.8526 2.3604 -3.0848 8 7 3.0277 3.1854 -3.6920 9 14 5.5096 1.9645 -3.8509 10 1 5.3748 0.7808 -4.7375 11 1 5.9780 3.1278 -4.6462 12 1 6.4933 1.6700 -2.7781 13 16 2.4122 2.1202 1.4287 14 8 3.3284 3.1570 1.1050 15 8 2.7095 1.0799 2.3499 16 6 0.9555 2.9119 2.0254 17 6 0.0796 2.2311 2.8593 18 6 -1.0535 2.8890 3.3055 19 6 -1.2748 4.2042 2.9039 20 6 -2.4855 4.9233 3.3733 21 7 -3.4424 4.4395 4.1781 22 7 -4.3134 5.3765 4.3434 23 7 -3.9408 6.4152 3.6805 24 1 -4.4217 7.2565 3.6390 25 7 -2.8286 6.1620 3.0808 26 7 -0.4158 4.8176 2.1009 27 6 0.6733 4.2167 1.6660 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3618 1.8097 -1.9453 34 1 2.0923 3.1802 -1.0756 35 1 3.2795 3.5879 -4.5378 36 1 0.2778 1.2111 3.1534 37 1 -1.7566 2.3891 3.9553 38 1 1.3523 4.7491 1.0166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736534255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:23 Heat of formation + Delta-G solvation = 95.890947 kcal Electronic energy + Delta-G solvation = -26781.825438 eV Core-core repulsion = 22790.171891 eV Total energy + Delta-G solvation = -3991.653547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.83120 -40.31646 -36.82534 -36.16127 -35.33331 -34.83962 -34.02123 -32.78467 -32.67212 -31.24329 -30.06764 -26.67885 -25.75711 -25.13782 -23.59962 -23.19143 -22.51146 -21.76711 -19.67865 -18.72847 -17.77571 -17.51702 -17.19269 -16.85454 -16.54527 -16.26532 -15.43038 -14.71840 -14.46007 -14.37299 -14.27170 -13.93279 -13.63383 -13.34412 -13.24851 -12.94652 -12.61779 -12.16396 -12.08106 -11.77653 -11.76373 -11.58182 -11.50984 -11.49492 -11.41827 -11.07063 -11.02467 -10.92726 -10.53567 -10.51869 -10.19561 -10.00676 -9.86445 -9.72448 -9.39789 -8.47189 -8.17014 -6.08940 -4.13229 -0.01683 0.77247 0.85960 1.00015 1.81843 1.86165 3.01997 3.30821 3.33051 3.37972 3.43511 3.64010 3.68485 4.18989 4.40238 4.43929 4.53406 4.66516 4.76759 4.86257 5.11026 5.17227 5.26633 5.33905 5.49793 5.59691 5.63970 5.66408 5.74007 5.89699 5.99756 6.21800 6.26597 6.51760 6.55725 7.16070 7.31165 7.47499 7.51651 7.77717 7.88107 8.15429 8.89155 9.52325 10.99594 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003158 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.964108 B = 8865.298726 C = 9453.844723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 N -0.977 5.977 4 C 0.255 3.745 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.687 3.313 14 O -0.933 6.933 15 O -0.969 6.969 16 C -0.716 4.716 17 C 0.024 3.976 18 C -0.151 4.151 19 C 0.240 3.760 20 C 0.214 3.786 21 N -0.255 5.255 22 N -0.048 5.048 23 N -0.226 5.226 24 H 0.478 0.522 25 N -0.251 5.251 26 N -0.465 5.465 27 C 0.209 3.791 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.593 1.274 13.366 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 N -0.817 5.817 4 C 0.133 3.867 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.771 3.229 14 O -0.923 6.923 15 O -0.959 6.959 16 C -0.800 4.800 17 C -0.002 4.002 18 C -0.174 4.174 19 C 0.101 3.899 20 C -0.067 4.067 21 N -0.130 5.130 22 N -0.043 5.043 23 N -0.073 5.073 24 H 0.333 0.667 25 N -0.103 5.103 26 N -0.176 5.176 27 C 0.050 3.950 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.177 0.823 37 H 0.173 0.827 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.590 2.357 13.688 19.432 hybrid contribution 0.229 -0.120 -0.624 0.676 sum -13.361 2.237 13.064 18.820 Atomic orbital electron populations 1.22291 0.97254 1.01736 1.02061 1.21242 0.93044 0.82783 1.04061 1.57457 1.80954 1.21201 1.22082 1.19148 0.97745 0.91250 0.78556 1.21456 1.01961 1.27893 1.05575 0.91954 1.24922 0.97368 0.94768 0.96859 1.69917 1.36127 1.30095 1.17192 0.86514 0.83990 0.77834 0.79236 1.20657 1.21081 1.19624 1.02421 0.73760 0.73748 0.72954 1.93627 1.57681 1.57774 1.83230 1.93510 1.82772 1.56256 1.63372 1.32842 1.25882 1.08451 1.12834 1.21330 0.89965 0.99776 0.89170 1.22040 0.99202 0.94213 1.01936 1.17996 0.89078 0.89789 0.93078 1.23174 0.96933 0.88418 0.98199 1.76085 1.00421 1.21172 1.15297 1.78932 1.20187 0.91387 1.13834 1.47881 1.14589 1.15415 1.29384 0.66727 1.75199 1.00192 1.17348 1.17600 1.67639 1.02970 1.37364 1.09581 1.22679 0.91055 0.89589 0.91683 0.91861 0.93621 0.91798 0.89123 0.90163 0.94329 0.94258 0.92632 0.82272 0.82659 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.80 6.40 -4.04 -0.03 1.78 16 3 N -0.98 -18.62 2.77 -115.66 -0.32 -18.94 16 4 C 0.25 5.95 5.10 -5.19 -0.03 5.92 16 5 C -0.53 -14.10 9.38 -34.44 -0.32 -14.42 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 9 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 13 S 2.69 49.25 5.66 -107.50 -0.61 48.64 16 14 O -0.93 -20.42 16.27 -57.17 -0.93 -21.35 16 15 O -0.97 -18.02 15.90 -57.17 -0.91 -18.92 16 16 C -0.72 -10.90 5.99 -39.38 -0.24 -11.14 16 17 C 0.02 0.30 8.55 -39.32 -0.34 -0.03 16 18 C -0.15 -1.79 9.74 -39.13 -0.38 -2.17 16 19 C 0.24 3.32 6.75 -82.93 -0.56 2.76 16 20 C 0.21 2.74 8.03 -156.30 -1.26 1.48 16 21 N -0.26 -3.04 12.21 32.15 0.39 -2.64 16 22 N -0.05 -0.48 13.47 60.35 0.81 0.34 16 23 N -0.23 -1.76 7.90 60.35 0.48 -1.28 16 24 H 0.48 1.27 8.96 -340.37 -3.05 -1.78 16 25 N -0.25 -2.91 12.38 32.17 0.40 -2.51 16 26 N -0.47 -7.22 10.29 -9.77 -0.10 -7.32 16 27 C 0.21 3.29 10.68 -17.58 -0.19 3.10 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.54 7.02 -51.93 -0.36 0.17 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 32 H 0.08 1.15 6.91 -51.92 -0.36 0.79 16 33 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.16 1.62 7.70 -52.49 -0.40 1.22 16 37 H 0.16 1.43 7.88 -52.49 -0.41 1.01 16 38 H 0.19 2.83 7.62 -52.49 -0.40 2.43 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -34.25 349.66 -9.47 -43.73 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.62 Total: -3.69 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -3.05 Total: -12.98 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 2.40 Total: -56.86 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.84 Total: -40.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 49.25 SS G_CDS: -0.61 Total: 48.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.25 -9.47 -43.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736534255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.618 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds