Wall clock time and date at job start Tue Mar 31 2020 21:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47160 * 2 1 4 4 C 1.46499 * 119.99905 * 274.99627 * 3 2 1 5 5 C 1.50699 * 109.47089 * 275.00042 * 4 3 2 6 6 H 1.07997 * 119.99930 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99909 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99689 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00091 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46961 * 89.99984 * 9 7 5 11 11 H 1.48501 * 109.47316 * 209.99941 * 9 7 5 12 12 H 1.48501 * 109.47154 * 330.00010 * 9 7 5 13 13 S 1.65598 * 120.00086 * 94.99922 * 3 2 1 14 14 O 1.42101 * 106.40505 * 156.45682 * 13 3 2 15 15 O 1.42103 * 106.40351 * 23.53757 * 13 3 2 16 16 C 1.76203 * 107.22009 * 270.00110 * 13 3 2 17 17 C 1.38776 * 120.32202 * 89.99699 * 16 13 3 18 18 C 1.38414 * 118.50605 * 180.02562 * 17 16 13 19 19 C 1.39291 * 119.07280 * 0.02562 * 18 17 16 20 20 C 1.48429 * 119.72777 * 179.97438 * 19 18 17 21 21 N 1.34064 * 126.67199 * 0.02947 * 20 19 18 22 22 N 1.28990 * 107.26616 * 179.97438 * 21 20 19 23 23 N 1.28733 * 108.94492 * 359.97438 * 22 21 20 24 24 H 0.96995 * 125.33767 * 180.02562 * 23 22 21 25 25 N 1.28871 * 109.32168 * 0.02562 * 23 22 21 26 26 N 1.32631 * 120.55042 * 0.27398 * 19 18 17 27 27 C 1.31763 * 121.61926 * 359.43546 * 26 19 18 28 28 H 1.08996 * 109.47575 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47361 * 299.99967 * 1 2 3 30 30 H 1.08997 * 109.47202 * 59.99975 * 1 2 3 31 31 H 1.08996 * 109.47063 * 239.99697 * 2 1 3 32 32 H 1.09008 * 109.46879 * 119.99651 * 2 1 3 33 33 H 1.09001 * 109.47197 * 35.00205 * 4 3 2 34 34 H 1.09003 * 109.46782 * 155.00278 * 4 3 2 35 35 H 0.96999 * 119.99709 * 179.97438 * 8 7 5 36 36 H 1.07995 * 120.74299 * 0.02562 * 17 16 13 37 37 H 1.08001 * 120.46409 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.55502 * 180.26617 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4949 1.7887 -1.8822 6 1 4.1721 1.1110 -1.3838 7 6 3.8526 2.3604 -3.0848 8 7 3.0277 3.1854 -3.6920 9 14 5.5096 1.9645 -3.8509 10 1 5.3748 0.7808 -4.7375 11 1 5.9780 3.1278 -4.6462 12 1 6.4933 1.6700 -2.7781 13 16 2.4122 2.1202 1.4287 14 8 3.3284 3.1570 1.1050 15 8 2.7095 1.0799 2.3499 16 6 0.9555 2.9119 2.0254 17 6 0.0796 2.2311 2.8593 18 6 -1.0535 2.8890 3.3055 19 6 -1.2748 4.2042 2.9039 20 6 -2.4855 4.9233 3.3733 21 7 -3.4424 4.4395 4.1781 22 7 -4.3134 5.3765 4.3434 23 7 -3.9408 6.4152 3.6805 24 1 -4.4217 7.2565 3.6390 25 7 -2.8286 6.1620 3.0808 26 7 -0.4158 4.8176 2.1009 27 6 0.6733 4.2167 1.6660 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3618 1.8097 -1.9453 34 1 2.0923 3.1802 -1.0756 35 1 3.2795 3.5879 -4.5378 36 1 0.2778 1.2111 3.1534 37 1 -1.7566 2.3891 3.9553 38 1 1.3523 4.7491 1.0166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736534255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:23 Heat of formation + Delta-G solvation = 69.329598 kcal Electronic energy + Delta-G solvation = -26782.977224 eV Core-core repulsion = 22790.171891 eV Total energy + Delta-G solvation = -3992.805334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.65898 -41.41130 -38.35029 -37.68628 -36.88582 -35.69250 -34.95113 -34.67060 -33.81322 -32.26848 -31.50693 -28.48667 -26.76486 -26.03466 -24.91849 -24.61880 -23.51843 -23.17414 -20.49378 -20.09173 -19.16762 -18.48317 -18.34809 -18.30684 -18.01385 -17.75282 -16.98256 -16.25685 -15.72688 -15.52116 -15.40852 -15.14534 -14.82230 -14.65021 -14.45935 -14.35571 -13.81042 -13.56787 -13.50959 -13.33084 -13.14029 -13.02490 -12.71339 -12.67078 -12.62459 -12.45401 -12.37329 -12.28456 -12.15184 -12.12291 -11.71006 -11.62947 -11.24546 -10.92506 -10.54654 -10.44658 -9.78530 -8.15892 -6.26822 -1.10155 -0.58622 -0.05814 -0.01619 0.83922 1.21358 1.42960 1.45562 1.55644 2.00702 2.12407 2.41473 2.45338 2.76549 2.78828 3.15073 3.18740 3.47003 3.70073 3.72669 3.85610 3.96884 4.02727 4.25274 4.47842 4.48783 4.52065 4.59328 4.68321 4.73269 5.08342 5.18207 5.21178 5.23362 5.44865 5.47688 5.55159 5.75773 5.94909 6.14576 6.38074 6.81704 6.93060 7.41906 8.91658 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003158 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.964108 B = 8865.298726 C = 9453.844723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.984 5.984 4 C 0.270 3.730 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.924 5.924 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.272 1.272 13 S 2.699 3.301 14 O -0.979 6.979 15 O -0.972 6.972 16 C -0.718 4.718 17 C 0.032 3.968 18 C -0.135 4.135 19 C 0.233 3.767 20 C 0.198 3.802 21 N -0.264 5.264 22 N -0.044 5.044 23 N -0.195 5.195 24 H 0.498 0.502 25 N -0.266 5.266 26 N -0.484 5.484 27 C 0.197 3.803 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.021 0.979 35 H 0.266 0.734 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.151 0.252 14.836 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.823 5.823 4 C 0.147 3.853 5 C -0.584 4.584 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.197 1.197 13 S 2.788 3.212 14 O -0.969 6.969 15 O -0.962 6.962 16 C -0.807 4.807 17 C 0.005 3.995 18 C -0.158 4.158 19 C 0.094 3.906 20 C -0.083 4.083 21 N -0.138 5.138 22 N -0.039 5.039 23 N -0.047 5.047 24 H 0.358 0.642 25 N -0.120 5.120 26 N -0.195 5.195 27 C 0.038 3.962 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.207 0.793 37 H 0.206 0.794 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.138 1.303 15.157 21.461 hybrid contribution 0.542 0.272 -0.951 1.128 sum -14.596 1.575 14.206 20.428 Atomic orbital electron populations 1.22245 0.94879 1.03660 1.01961 1.21514 0.95113 0.80938 1.04409 1.57321 1.81634 1.22552 1.20802 1.18671 0.96012 0.90616 0.80048 1.21828 1.03192 1.27534 1.05841 0.92519 1.25700 1.00622 0.94779 0.97520 1.70012 1.37731 1.31057 1.17629 0.85622 0.80003 0.78049 0.78457 1.19286 1.20752 1.19678 1.01634 0.73981 0.73028 0.72515 1.93568 1.60414 1.59076 1.83866 1.93493 1.83388 1.56363 1.62989 1.32239 1.25367 1.08349 1.14702 1.21726 0.89213 1.00840 0.87677 1.22358 0.99020 0.93236 1.01152 1.18350 0.89019 0.90757 0.92464 1.23069 0.97154 0.88892 0.99160 1.76070 1.00425 1.21835 1.15428 1.78878 1.19690 0.91550 1.13753 1.47907 1.13411 1.15826 1.27544 0.64240 1.75151 1.01363 1.17250 1.18197 1.67607 1.03237 1.38006 1.10623 1.22565 0.91454 0.90001 0.92221 0.88867 0.92201 0.93434 0.90139 0.88459 0.95218 0.96137 0.92501 0.79304 0.79375 0.80886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 10.24 71.98 0.74 -3.32 16 2 C 0.11 3.21 6.40 86.38 0.55 3.76 16 3 N -0.98 -37.92 2.77 -519.84 -1.44 -39.36 16 4 C 0.27 13.06 5.10 85.63 0.44 13.50 16 5 C -0.54 -29.72 9.38 25.60 0.24 -29.48 16 6 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.73 5.46 84.65 0.46 1.20 16 8 N -0.92 -53.31 13.29 21.45 0.28 -53.03 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 13 S 2.70 99.63 5.66 -56.49 -0.32 99.31 16 14 O -0.98 -44.61 16.27 -128.00 -2.08 -46.69 16 15 O -0.97 -35.11 15.90 -128.00 -2.04 -37.15 16 16 C -0.72 -21.49 5.99 22.40 0.13 -21.36 16 17 C 0.03 0.72 8.55 22.44 0.19 0.91 16 18 C -0.14 -2.81 9.74 22.57 0.22 -2.59 16 19 C 0.23 6.09 6.75 41.99 0.28 6.37 16 20 C 0.20 4.72 8.03 137.36 1.10 5.82 16 21 N -0.26 -5.64 12.21 -52.19 -0.64 -6.27 16 22 N -0.04 -0.76 13.47 37.02 0.50 -0.26 16 23 N -0.20 -2.60 7.90 37.02 0.29 -2.31 16 24 H 0.50 1.43 8.96 -347.54 -3.12 -1.69 16 25 N -0.27 -5.75 12.38 -52.14 -0.65 -6.40 16 26 N -0.48 -14.96 10.29 -184.82 -1.90 -16.86 16 27 C 0.20 6.33 10.68 84.71 0.90 7.24 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.25 7.02 -2.39 -0.02 1.23 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 32 H 0.10 2.62 6.91 -2.38 -0.02 2.61 16 33 H 0.03 1.47 8.11 -2.39 -0.02 1.46 16 34 H 0.02 1.07 7.61 -2.39 -0.02 1.05 16 35 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.19 3.11 7.70 -2.91 -0.02 3.09 16 37 H 0.19 2.66 7.88 -2.91 -0.02 2.64 16 38 H 0.17 5.76 7.62 -2.91 -0.02 5.74 16 Total: -1.00 -74.68 349.66 -2.68 -77.36 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -1.98 Total: 3.76 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 5.27 Total: -17.95 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -3.55 Total: -124.48 kcal Atomic # 8 Polarization: -79.72 SS G_CDS: -4.12 Total: -83.84 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 99.63 SS G_CDS: -0.32 Total: 99.31 kcal Total: -74.68 -2.68 -77.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736534255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.685 kcal (2) G-P(sol) polarization free energy of solvation -74.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds