Wall clock time and date at job start Tue Mar 31 2020 20:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 116.99981 * 2 1 4 4 C 1.38755 * 120.05647 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94248 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05778 * 359.97222 * 5 4 3 7 7 C 1.50697 * 119.94255 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47421 * 89.99910 * 7 6 5 9 9 O 1.21290 * 119.99711 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00480 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99857 * 0.02562 * 10 8 7 12 12 H 1.08007 * 119.99817 * 16.60479 * 11 10 8 13 13 C 1.38948 * 120.00218 * 196.60024 * 11 10 8 14 14 N 1.31408 * 119.99801 * 20.80119 * 13 11 10 15 15 Si 1.86801 * 119.99822 * 200.79880 * 13 11 10 16 16 H 1.48494 * 109.47601 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46635 * 120.00491 * 15 13 11 18 18 H 1.48507 * 109.46832 * 239.99922 * 15 13 11 19 19 C 1.46499 * 120.00297 * 180.02562 * 10 8 7 20 20 C 1.50697 * 109.47018 * 84.08760 * 19 10 8 21 21 O 1.20813 * 120.00383 * 359.97438 * 20 19 10 22 22 O 1.34233 * 119.99355 * 180.02562 * 20 19 10 23 23 C 1.38243 * 120.11286 * 0.02562 * 6 5 4 24 24 C 1.38169 * 120.05494 * 359.74611 * 23 6 5 25 25 N 1.47999 * 120.02900 * 180.25348 * 24 23 6 26 26 O 1.21798 * 120.00029 * 0.22983 * 25 24 23 27 27 O 1.21800 * 120.00082 * 180.23010 * 25 24 23 28 28 H 1.09000 * 109.47171 * 60.00018 * 1 2 3 29 29 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47130 * 300.00337 * 1 2 3 31 31 H 1.08003 * 120.02356 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.96963 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47136 * 210.00136 * 7 6 5 34 34 H 1.08999 * 109.47074 * 330.00028 * 7 6 5 35 35 H 0.97004 * 120.00009 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.46781 * 204.08915 * 19 10 8 37 37 H 1.08998 * 109.46906 * 324.08287 * 19 10 8 38 38 H 0.96702 * 116.99373 * 179.97438 * 22 20 19 39 39 H 1.07991 * 119.97557 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6758 0.0017 7 6 3.9861 5.0185 0.0028 8 6 4.2136 5.4652 1.4240 9 8 3.8558 4.7621 2.3453 10 7 4.8155 6.6455 1.6713 11 6 5.2203 7.4400 0.6300 12 1 4.8322 7.2679 -0.3632 13 6 6.1298 8.4667 0.8522 14 7 6.9043 8.4401 1.9134 15 14 6.2515 9.8847 -0.3577 16 1 5.2779 9.6799 -1.4601 17 1 5.9466 11.1591 0.3411 18 1 7.6266 9.9428 -0.9155 19 6 5.0371 7.0794 3.0529 20 6 6.3094 6.4633 3.5750 21 8 6.9636 5.7359 2.8660 22 8 6.7153 6.7218 4.8281 23 6 4.0560 2.5171 0.0012 24 6 3.4312 1.2848 0.0054 25 7 4.2390 0.0448 0.0105 26 8 5.4552 0.1103 0.0153 27 8 3.6877 -1.0413 0.0100 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2128 2.3203 0.0005 32 1 1.3340 4.5114 0.0011 33 1 4.9442 4.9386 -0.5107 34 1 3.3582 5.7466 -0.5108 35 1 7.5395 9.1566 2.0684 36 1 5.1203 8.1658 3.0835 37 1 4.1986 6.7616 3.6725 38 1 7.5374 6.3034 5.1183 39 1 5.1344 2.5752 0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737982806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:20 Heat of formation + Delta-G solvation = -124.830474 kcal Electronic energy + Delta-G solvation = -29536.788339 eV Core-core repulsion = 25028.225219 eV Total energy + Delta-G solvation = -4508.563119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.92833 -40.33308 -39.46496 -38.52696 -37.57624 -36.14820 -35.25724 -34.61485 -32.52697 -31.77695 -31.67048 -28.86064 -27.86114 -26.58156 -26.01558 -24.78487 -22.54422 -21.94504 -20.83324 -19.46285 -19.00101 -18.39999 -17.83638 -17.29545 -17.11535 -16.93398 -16.46420 -16.32492 -15.98797 -15.61299 -14.80708 -14.72519 -14.50321 -14.40122 -14.29959 -14.05940 -13.49130 -13.18090 -12.65274 -12.45856 -12.07772 -11.96119 -11.76157 -11.66253 -11.53954 -11.28711 -11.23379 -11.19968 -11.05916 -10.79741 -10.75969 -10.66607 -10.53494 -10.29888 -9.72054 -9.57070 -9.16590 -8.90327 -8.39226 -8.12628 -6.65510 -4.15409 0.11463 1.04314 1.58448 1.68338 2.80136 2.96866 3.09526 3.13054 3.30980 3.48845 3.62940 3.90973 4.19466 4.33041 4.43005 4.55876 4.79141 4.84818 4.87332 4.88675 5.00085 5.01317 5.20830 5.40414 5.59588 5.78181 5.84551 5.92479 6.05803 6.18669 6.31112 6.44148 6.50701 6.57336 6.58408 6.92572 7.18825 7.40522 7.58021 7.99106 8.06442 8.82343 9.09975 9.20481 9.59398 10.41893 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.003264 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.396428 B = 8576.014403 C = 9132.086772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.287 6.287 3 C 0.183 3.817 4 C -0.213 4.213 5 C -0.014 4.014 6 C -0.078 4.078 7 C -0.082 4.082 8 C 0.469 3.531 9 O -0.598 6.598 10 N -0.426 5.426 11 C -0.342 4.342 12 H 0.107 0.893 13 C 0.039 3.961 14 N -0.866 5.866 15 Si 0.927 3.073 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.281 1.281 19 C 0.157 3.843 20 C 0.498 3.502 21 O -0.508 6.508 22 O -0.536 6.536 23 C -0.006 4.006 24 C -0.078 4.078 25 N 0.040 4.960 26 O -0.181 6.181 27 O -0.150 6.150 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.274 0.726 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.391 0.609 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 -4.788 -3.733 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.197 6.197 3 C 0.134 3.866 4 C -0.232 4.232 5 C -0.032 4.032 6 C -0.080 4.080 7 C -0.122 4.122 8 C 0.258 3.742 9 O -0.484 6.484 10 N -0.145 5.145 11 C -0.469 4.469 12 H 0.124 0.876 13 C -0.167 4.167 14 N -0.503 5.503 15 Si 0.753 3.247 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.207 1.207 19 C 0.031 3.969 20 C 0.339 3.661 21 O -0.394 6.394 22 O -0.347 6.347 23 C -0.025 4.025 24 C -0.162 4.162 25 N 0.557 4.443 26 O -0.390 6.390 27 O -0.368 6.368 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.100 0.900 38 H 0.248 0.752 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.219 -4.614 -3.539 13.532 hybrid contribution 1.003 0.460 -0.321 1.149 sum -11.216 -4.155 -3.860 12.568 Atomic orbital electron populations 1.23238 0.77669 1.04771 1.01706 1.86385 1.21902 1.24707 1.86756 1.18582 0.89324 0.86243 0.92455 1.21194 1.00568 0.90962 1.10482 1.21268 0.94106 0.97683 0.90165 1.19488 0.93119 0.94597 1.00777 1.20455 1.02290 0.92033 0.97421 1.19911 0.83304 0.81014 0.89992 1.90580 1.57485 1.54188 1.46129 1.43396 1.50363 1.16182 1.04531 1.19692 1.25624 1.11081 0.90506 0.87569 1.25253 0.93893 0.99680 0.97838 1.69841 1.19338 1.32332 1.28802 0.85879 0.78374 0.80525 0.79956 1.19103 1.20381 1.20680 1.20430 0.91046 1.01523 0.83864 1.23653 0.87654 0.77191 0.77649 1.90564 1.55494 1.36275 1.57031 1.84514 1.44932 1.71544 1.33671 1.20838 1.02262 0.88415 0.91030 1.20424 0.87978 0.85561 1.22285 1.43326 1.01173 1.02400 0.97420 1.94544 0.95673 1.93977 1.54853 1.94530 1.74367 1.15113 1.52823 0.92173 0.87448 0.92072 0.83436 0.83883 0.87815 0.88219 0.91533 0.85842 0.90039 0.75244 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.29 -3.75 8.51 -41.55 -0.35 -4.10 16 3 C 0.18 2.60 6.67 -39.21 -0.26 2.33 16 4 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 5 C -0.01 -0.18 9.69 -39.61 -0.38 -0.56 16 6 C -0.08 -1.23 4.37 -104.60 -0.46 -1.68 16 7 C -0.08 -1.40 4.27 -29.04 -0.12 -1.53 16 8 C 0.47 10.29 7.42 -10.99 -0.08 10.21 16 9 O -0.60 -14.59 15.71 5.55 0.09 -14.50 16 10 N -0.43 -9.84 2.18 -116.10 -0.25 -10.10 16 11 C -0.34 -7.81 9.15 -14.93 -0.14 -7.95 16 12 H 0.11 2.20 6.55 -52.48 -0.34 1.86 16 13 C 0.04 0.90 4.90 -17.47 -0.09 0.81 16 14 N -0.87 -21.24 9.24 55.50 0.51 -20.73 16 15 Si 0.93 17.89 29.60 -169.99 -5.03 12.86 16 16 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 17 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 C 0.16 3.55 5.14 -5.20 -0.03 3.53 16 20 C 0.50 11.80 6.50 36.00 0.23 12.03 16 21 O -0.51 -13.78 16.80 -18.74 -0.31 -14.09 16 22 O -0.54 -10.54 13.42 -39.27 -0.53 -11.07 16 23 C -0.01 -0.11 9.20 -39.60 -0.36 -0.47 16 24 C -0.08 -1.30 6.87 -79.81 -0.55 -1.85 16 25 N 0.04 0.74 4.45 34.03 0.15 0.89 16 26 O -0.18 -3.50 18.45 -29.46 -0.54 -4.04 16 27 O -0.15 -2.75 17.24 -36.49 -0.63 -3.38 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.15 1.16 6.30 -52.48 -0.33 0.83 16 32 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.10 1.77 8.04 -51.93 -0.42 1.35 16 34 H 0.10 1.43 7.64 -51.93 -0.40 1.03 16 35 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 36 H 0.12 2.78 6.35 -51.93 -0.33 2.45 16 37 H 0.08 1.73 7.61 -51.93 -0.40 1.33 16 38 H 0.39 6.02 9.10 45.56 0.41 6.43 16 39 H 0.16 2.69 7.61 -52.49 -0.40 2.29 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -33.49 348.99 -6.22 -39.71 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -2.97 Total: 10.09 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -1.60 Total: 13.20 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.41 Total: -29.94 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -2.28 Total: -51.18 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.49 -6.22 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737982806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.125 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds