Wall clock time and date at job start Tue Mar 31 2020 20:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 116.99981 * 2 1 4 4 C 1.38755 * 120.05647 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94248 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05778 * 359.97222 * 5 4 3 7 7 C 1.50697 * 119.94255 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47421 * 89.99910 * 7 6 5 9 9 O 1.21290 * 119.99711 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00480 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99857 * 0.02562 * 10 8 7 12 12 H 1.08007 * 119.99817 * 16.60479 * 11 10 8 13 13 C 1.38948 * 120.00218 * 196.60024 * 11 10 8 14 14 N 1.31408 * 119.99801 * 20.80119 * 13 11 10 15 15 Si 1.86801 * 119.99822 * 200.79880 * 13 11 10 16 16 H 1.48494 * 109.47601 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46635 * 120.00491 * 15 13 11 18 18 H 1.48507 * 109.46832 * 239.99922 * 15 13 11 19 19 C 1.46499 * 120.00297 * 180.02562 * 10 8 7 20 20 C 1.50697 * 109.47018 * 84.08760 * 19 10 8 21 21 O 1.20813 * 120.00383 * 359.97438 * 20 19 10 22 22 O 1.34233 * 119.99355 * 180.02562 * 20 19 10 23 23 C 1.38243 * 120.11286 * 0.02562 * 6 5 4 24 24 C 1.38169 * 120.05494 * 359.74611 * 23 6 5 25 25 N 1.47999 * 120.02900 * 180.25348 * 24 23 6 26 26 O 1.21798 * 120.00029 * 0.22983 * 25 24 23 27 27 O 1.21800 * 120.00082 * 180.23010 * 25 24 23 28 28 H 1.09000 * 109.47171 * 60.00018 * 1 2 3 29 29 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47130 * 300.00337 * 1 2 3 31 31 H 1.08003 * 120.02356 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.96963 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47136 * 210.00136 * 7 6 5 34 34 H 1.08999 * 109.47074 * 330.00028 * 7 6 5 35 35 H 0.97004 * 120.00009 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.46781 * 204.08915 * 19 10 8 37 37 H 1.08998 * 109.46906 * 324.08287 * 19 10 8 38 38 H 0.96702 * 116.99373 * 179.97438 * 22 20 19 39 39 H 1.07991 * 119.97557 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6758 0.0017 7 6 3.9861 5.0185 0.0028 8 6 4.2136 5.4652 1.4240 9 8 3.8558 4.7621 2.3453 10 7 4.8155 6.6455 1.6713 11 6 5.2203 7.4400 0.6300 12 1 4.8322 7.2679 -0.3632 13 6 6.1298 8.4667 0.8522 14 7 6.9043 8.4401 1.9134 15 14 6.2515 9.8847 -0.3577 16 1 5.2779 9.6799 -1.4601 17 1 5.9466 11.1591 0.3411 18 1 7.6266 9.9428 -0.9155 19 6 5.0371 7.0794 3.0529 20 6 6.3094 6.4633 3.5750 21 8 6.9636 5.7359 2.8660 22 8 6.7153 6.7218 4.8281 23 6 4.0560 2.5171 0.0012 24 6 3.4312 1.2848 0.0054 25 7 4.2390 0.0448 0.0105 26 8 5.4552 0.1103 0.0153 27 8 3.6877 -1.0413 0.0100 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2128 2.3203 0.0005 32 1 1.3340 4.5114 0.0011 33 1 4.9442 4.9386 -0.5107 34 1 3.3582 5.7466 -0.5108 35 1 7.5395 9.1566 2.0684 36 1 5.1203 8.1658 3.0835 37 1 4.1986 6.7616 3.6725 38 1 7.5374 6.3034 5.1183 39 1 5.1344 2.5752 0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737982806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:19 Heat of formation + Delta-G solvation = -145.965696 kcal Electronic energy + Delta-G solvation = -29537.704831 eV Core-core repulsion = 25028.225219 eV Total energy + Delta-G solvation = -4509.479611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.26553 -41.51829 -41.11444 -40.08270 -38.83367 -37.55513 -36.99113 -36.43756 -33.78399 -33.47583 -32.83109 -30.32750 -28.84940 -27.94223 -27.23739 -26.45124 -23.66448 -23.32885 -22.39841 -21.12067 -20.25666 -19.77422 -19.00613 -18.82256 -18.67124 -18.54773 -18.02827 -17.58100 -17.30980 -16.83723 -16.34546 -16.21313 -16.06537 -15.79792 -15.46441 -15.37077 -14.81282 -14.61535 -13.82975 -13.79647 -13.45431 -13.37523 -13.27717 -13.01392 -12.69553 -12.67592 -12.64904 -12.59039 -12.37401 -12.27764 -12.17604 -12.12486 -12.00096 -11.96674 -11.55893 -10.98643 -10.67927 -10.54998 -9.90821 -9.54162 -8.38383 -5.93397 -1.16070 -0.04451 0.31482 0.41877 1.42968 1.53619 1.65525 1.74321 1.84816 1.91823 2.17835 2.33355 2.55471 2.94241 3.18949 3.28679 3.49625 3.67975 3.83772 3.93383 4.23535 4.27072 4.35445 4.39020 4.46939 4.53357 4.65631 4.72074 4.73947 4.78698 4.85319 4.89554 5.12745 5.28741 5.33702 5.47519 5.70063 5.90312 6.00106 6.32044 6.55966 7.08037 7.35237 7.48359 7.87791 8.69468 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.003264 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.396428 B = 8576.014403 C = 9132.086772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.307 6.307 3 C 0.189 3.811 4 C -0.195 4.195 5 C -0.001 4.001 6 C -0.093 4.093 7 C -0.073 4.073 8 C 0.460 3.540 9 O -0.627 6.627 10 N -0.439 5.439 11 C -0.353 4.353 12 H 0.127 0.873 13 C -0.006 4.006 14 N -0.900 5.900 15 Si 0.994 3.006 16 H -0.247 1.247 17 H -0.278 1.278 18 H -0.295 1.295 19 C 0.154 3.846 20 C 0.499 3.501 21 O -0.552 6.552 22 O -0.524 6.524 23 C -0.026 4.026 24 C -0.105 4.105 25 N 0.041 4.959 26 O -0.230 6.230 27 O -0.143 6.143 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.197 0.803 32 H 0.180 0.820 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.271 0.729 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.411 0.589 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.240 -3.872 -4.851 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.218 6.218 3 C 0.139 3.861 4 C -0.213 4.213 5 C -0.018 4.018 6 C -0.095 4.095 7 C -0.112 4.112 8 C 0.250 3.750 9 O -0.515 6.515 10 N -0.158 5.158 11 C -0.479 4.479 12 H 0.145 0.855 13 C -0.208 4.208 14 N -0.538 5.538 15 Si 0.819 3.181 16 H -0.170 1.170 17 H -0.204 1.204 18 H -0.221 1.221 19 C 0.028 3.972 20 C 0.341 3.659 21 O -0.441 6.441 22 O -0.336 6.336 23 C -0.045 4.045 24 C -0.190 4.190 25 N 0.552 4.448 26 O -0.429 6.429 27 O -0.366 6.366 28 H 0.103 0.897 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.214 0.786 32 H 0.197 0.803 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.270 0.730 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.658 -3.686 -4.645 16.743 hybrid contribution 1.923 0.080 0.123 1.929 sum -13.734 -3.605 -4.522 14.902 Atomic orbital electron populations 1.23696 0.74547 1.06799 1.03649 1.86376 1.25108 1.24349 1.86015 1.18813 0.88408 0.87800 0.91072 1.21691 1.02572 0.89160 1.07882 1.21710 0.92821 0.99693 0.87622 1.19474 0.94561 0.93128 1.02341 1.20401 1.02986 0.93643 0.94204 1.20759 0.82174 0.80224 0.91800 1.90545 1.58501 1.54798 1.47666 1.43664 1.50528 1.16898 1.04679 1.20200 1.25531 1.10870 0.91307 0.85540 1.26123 0.93492 1.01725 0.99435 1.69950 1.20228 1.32894 1.30750 0.84847 0.77746 0.77287 0.78266 1.17043 1.20383 1.22138 1.20490 0.90893 1.01339 0.84457 1.23928 0.87660 0.76200 0.78067 1.90541 1.56874 1.38258 1.58390 1.84454 1.46111 1.71202 1.31850 1.20736 1.01562 0.89397 0.92839 1.20613 0.89121 0.84321 1.24982 1.43633 1.01154 1.03088 0.96878 1.94535 0.96677 1.94303 1.57413 1.94474 1.74150 1.16031 1.51995 0.89674 0.85696 0.90454 0.78650 0.80293 0.88555 0.84802 0.91913 0.85993 0.89096 0.72993 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.31 -7.25 8.51 -71.28 -0.61 -7.86 16 3 C 0.19 4.95 6.67 22.51 0.15 5.10 16 4 C -0.19 -3.64 9.04 22.37 0.20 -3.44 16 5 C 0.00 -0.01 9.69 22.25 0.22 0.20 16 6 C -0.09 -2.80 4.37 -19.85 -0.09 -2.89 16 7 C -0.07 -2.40 4.27 29.10 0.12 -2.27 16 8 C 0.46 20.02 7.42 87.66 0.65 20.67 16 9 O -0.63 -30.64 15.71 -3.06 -0.05 -30.69 16 10 N -0.44 -20.21 2.18 -639.60 -1.39 -21.60 16 11 C -0.35 -15.80 9.15 84.04 0.77 -15.03 16 12 H 0.13 4.98 6.55 -2.91 -0.02 4.96 16 13 C -0.01 -0.27 4.90 84.93 0.42 0.14 16 14 N -0.90 -44.58 9.24 21.66 0.20 -44.38 16 15 Si 0.99 35.99 29.60 68.60 2.03 38.02 16 16 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 17 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 18 H -0.29 -11.25 7.11 99.48 0.71 -10.54 16 19 C 0.15 7.02 5.14 85.63 0.44 7.46 16 20 C 0.50 24.02 6.50 71.24 0.46 24.48 16 21 O -0.55 -30.77 16.80 22.00 0.37 -30.40 16 22 O -0.52 -20.59 13.42 -51.45 -0.69 -21.28 16 23 C -0.03 -0.90 9.20 22.25 0.20 -0.70 16 24 C -0.10 -3.56 6.87 36.48 0.25 -3.31 16 25 N 0.04 1.59 4.45 -46.24 -0.21 1.39 16 26 O -0.23 -9.62 18.45 18.89 0.35 -9.27 16 27 O -0.14 -5.36 17.24 25.61 0.44 -4.92 16 28 H 0.08 0.53 7.66 -2.39 -0.02 0.51 16 29 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.20 1.75 6.30 -2.91 -0.02 1.73 16 32 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.10 3.30 8.04 -2.39 -0.02 3.28 16 34 H 0.13 3.39 7.64 -2.39 -0.02 3.38 16 35 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 36 H 0.12 5.54 6.35 -2.39 -0.02 5.52 16 37 H 0.09 3.87 7.61 -2.39 -0.02 3.85 16 38 H 0.41 12.54 9.10 -74.06 -0.67 11.86 16 39 H 0.13 5.07 7.61 -2.92 -0.02 5.05 16 Total: -1.00 -76.06 348.99 5.82 -70.23 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.47 Total: 29.16 kcal Atomic # 6 Polarization: 26.69 SS G_CDS: 4.91 Total: 31.60 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -1.40 Total: -64.60 kcal Atomic # 8 Polarization: -104.24 SS G_CDS: -0.19 Total: -104.42 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -76.06 5.82 -70.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737982806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.734 kcal (2) G-P(sol) polarization free energy of solvation -76.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds