Wall clock time and date at job start Tue Mar 31 2020 21:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81406 * 109.47155 * 2 1 4 4 O 1.42098 * 110.54612 * 68.37245 * 3 2 1 5 5 O 1.42099 * 110.53820 * 291.62090 * 3 2 1 6 6 C 1.76203 * 104.44794 * 179.97438 * 3 2 1 7 7 C 1.37959 * 120.07534 * 115.00062 * 6 3 2 8 8 C 1.38348 * 120.14954 * 180.25430 * 7 6 3 9 9 C 1.38395 * 120.30203 * 359.43944 * 8 7 6 10 10 C 1.37918 * 120.14566 * 0.55829 * 9 8 7 11 11 C 1.39606 * 120.07692 * 294.97541 * 6 3 2 12 12 C 1.47727 * 120.14867 * 359.97438 * 11 6 3 13 13 O 1.21475 * 119.99928 * 359.85011 * 12 11 6 14 14 O 1.34705 * 120.00140 * 179.85169 * 12 11 6 15 15 C 1.45206 * 116.99956 * 185.11148 * 14 12 11 16 16 C 1.53000 * 109.47048 * 184.86892 * 15 14 12 17 17 C 1.50705 * 115.54816 * 305.31057 * 16 15 14 18 18 H 1.08002 * 119.99920 * 145.00922 * 17 16 15 19 19 C 1.37870 * 120.00248 * 325.00374 * 17 16 15 20 20 N 1.31520 * 119.99746 * 3.16917 * 19 17 16 21 21 Si 1.86794 * 120.00460 * 183.16986 * 19 17 16 22 22 H 1.48502 * 109.47125 * 89.99633 * 21 19 17 23 23 H 1.48502 * 109.47358 * 210.00293 * 21 19 17 24 24 H 1.48506 * 109.47023 * 329.99992 * 21 19 17 25 25 C 1.52997 * 117.49965 * 159.63919 * 16 15 14 26 26 C 1.53003 * 117.49848 * 90.97806 * 16 15 14 27 27 H 1.08996 * 109.47121 * 300.00638 * 1 2 3 28 28 H 1.09004 * 109.47226 * 59.99864 * 1 2 3 29 29 H 1.08991 * 109.47473 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47571 * 239.99961 * 2 1 3 31 31 H 1.09003 * 109.47174 * 119.99585 * 2 1 3 32 32 H 1.08007 * 119.92894 * 359.96979 * 7 6 3 33 33 H 1.08000 * 119.85238 * 179.72154 * 8 7 6 34 34 H 1.07994 * 119.92513 * 180.30196 * 9 8 7 35 35 H 1.08003 * 120.07397 * 179.69641 * 10 9 8 36 36 H 1.09000 * 109.47010 * 304.86702 * 15 14 12 37 37 H 1.08997 * 109.47567 * 64.86774 * 15 14 12 38 38 H 0.97003 * 120.00074 * 185.00291 * 20 19 17 39 39 H 1.08997 * 117.50285 * 359.97438 * 25 16 15 40 40 H 1.09004 * 117.50114 * 145.02424 * 25 16 15 41 41 H 1.09007 * 117.50012 * 214.97799 * 26 16 15 42 42 H 1.08999 * 117.50050 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3440 1.2369 5 8 1.8386 2.3438 -1.2370 6 6 3.8899 1.5560 0.0008 7 6 4.6233 1.9979 -1.0810 8 6 6.0011 1.8728 -1.0843 9 6 6.6541 1.3147 0.0008 10 6 5.9332 0.8689 1.0888 11 6 4.5418 0.9868 1.0962 12 6 3.7631 0.5124 2.2586 13 8 2.5532 0.6197 2.2637 14 8 4.3949 -0.0391 3.3127 15 6 3.5614 -0.5863 4.3684 16 6 4.4459 -1.0543 5.5257 17 6 5.5345 -2.0297 5.1584 18 1 6.4864 -1.9934 5.6675 19 6 5.3153 -2.9684 4.1728 20 7 4.1793 -2.9729 3.5100 21 14 6.6315 -4.2339 3.7786 22 1 6.4296 -5.4379 4.6241 23 1 6.5398 -4.6138 2.3460 24 1 7.9718 -3.6558 4.0525 25 6 3.7883 -1.2134 6.8979 26 6 4.7454 -0.0474 6.6380 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.1203 2.4385 -1.9292 33 1 6.5701 2.2162 -1.9355 34 1 7.7303 1.2244 -0.0061 35 1 6.4436 0.4291 1.9329 36 1 2.8744 0.1818 4.7238 37 1 2.9925 -1.4315 3.9810 38 1 3.9952 -3.6763 2.8679 39 1 2.7256 -0.9842 6.9764 40 1 4.1433 -2.0232 7.5354 41 1 5.7297 -0.0906 7.1045 42 1 4.3126 0.9487 6.5451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:36 Heat of formation + Delta-G solvation = -82.834529 kcal Electronic energy + Delta-G solvation = -28361.450518 eV Core-core repulsion = 24401.001694 eV Total energy + Delta-G solvation = -3960.448824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.20397 -38.62280 -37.10032 -36.48899 -35.58099 -35.16605 -32.90117 -32.27776 -31.55489 -31.32771 -26.78732 -25.54470 -24.20566 -23.93420 -22.81988 -21.34039 -20.70024 -19.27601 -18.71206 -18.00738 -17.05149 -16.77901 -16.09954 -15.94366 -15.79117 -15.51296 -14.97957 -14.76787 -14.60974 -14.24152 -13.99623 -13.74828 -13.33678 -13.03368 -12.88935 -12.51996 -12.42128 -12.10502 -12.03923 -11.76487 -11.72607 -11.61663 -11.44761 -11.19538 -11.11543 -10.89145 -10.70105 -10.57867 -10.40277 -10.19774 -10.03556 -9.62392 -9.47546 -9.44539 -9.10936 -9.05701 -8.85316 -8.33126 -6.10650 -4.22284 0.25851 0.55476 1.03664 2.80892 3.07017 3.17961 3.26117 3.28389 3.28792 3.61819 4.03995 4.26040 4.44381 4.71265 4.80671 4.82417 4.85202 4.96531 5.04229 5.27035 5.34539 5.37728 5.45001 5.49324 5.74319 5.80849 5.95793 5.98294 6.02783 6.05194 6.06576 6.16279 6.22700 6.42191 6.53925 6.59312 6.66981 6.72486 6.89709 7.17729 7.35510 7.37594 7.80585 8.21750 8.38499 8.75809 9.39873 10.85382 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.004643 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.829858 B = 6028.870951 C = 6725.999149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.602 4.602 3 S 2.507 3.493 4 O -0.908 6.908 5 O -0.961 6.961 6 C -0.615 4.615 7 C -0.040 4.040 8 C -0.117 4.117 9 C -0.083 4.083 10 C -0.076 4.076 11 C -0.023 4.023 12 C 0.480 3.520 13 O -0.499 6.499 14 O -0.302 6.302 15 C 0.117 3.883 16 C 0.041 3.959 17 C -0.476 4.476 18 H 0.062 0.938 19 C 0.073 3.927 20 N -0.887 5.887 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.193 4.193 26 C -0.209 4.209 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.030 0.970 37 H 0.122 0.878 38 H 0.262 0.738 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 5.760 -9.907 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.733 4.733 3 S 2.685 3.315 4 O -0.905 6.905 5 O -0.958 6.958 6 C -0.699 4.699 7 C -0.058 4.058 8 C -0.136 4.136 9 C -0.101 4.101 10 C -0.095 4.095 11 C -0.025 4.025 12 C 0.325 3.675 13 O -0.392 6.392 14 O -0.215 6.215 15 C 0.045 3.955 16 C 0.041 3.959 17 C -0.513 4.513 18 H 0.080 0.920 19 C -0.129 4.129 20 N -0.525 5.525 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.231 4.231 26 C -0.246 4.246 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.175 0.825 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.048 0.952 37 H 0.139 0.861 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.801 6.471 -10.035 11.967 hybrid contribution 1.343 -1.472 -0.038 1.993 sum 0.543 4.999 -10.073 11.258 Atomic orbital electron populations 1.21447 0.90568 1.04820 1.02986 1.30319 1.06950 1.23489 1.12532 1.05271 0.73900 0.78092 0.74244 1.93622 1.81919 1.72197 1.42811 1.93500 1.83239 1.73163 1.45898 1.30881 1.27439 1.11130 1.00475 1.20949 0.94396 0.94471 0.96011 1.21513 0.94505 0.98756 0.98788 1.21503 1.00725 0.95080 0.92769 1.21796 0.92744 0.95849 0.99129 1.18948 0.94515 0.97653 0.91353 1.21090 0.86307 0.76172 0.83958 1.90809 1.14786 1.53114 1.80524 1.86501 1.40929 1.65978 1.28104 1.23082 0.91204 0.96794 0.84451 1.18958 0.96766 0.95553 0.84632 1.20491 0.98219 1.14110 1.18492 0.91950 1.24932 0.95813 0.97592 0.94577 1.69763 1.23766 1.32698 1.26281 0.86504 0.81949 0.81533 0.77548 1.20558 1.21159 1.19744 1.22990 0.96082 1.00134 1.03869 1.22975 0.99654 0.93456 1.08557 0.90639 0.91673 0.90015 0.86041 0.82536 0.83246 0.84671 0.84475 0.82790 0.95169 0.86077 0.92781 0.91284 0.89744 0.90286 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.92 37.16 0.37 -1.37 16 2 C -0.60 -8.59 6.05 37.16 0.22 -8.37 16 3 S 2.51 40.87 4.50 -107.50 -0.48 40.39 16 4 O -0.91 -18.20 14.83 -67.50 -1.00 -19.20 16 5 O -0.96 -15.92 16.74 -57.54 -0.96 -16.88 16 6 C -0.61 -9.75 5.61 -39.17 -0.22 -9.97 16 7 C -0.04 -0.51 9.49 -39.64 -0.38 -0.89 16 8 C -0.12 -1.27 10.04 -39.48 -0.40 -1.67 16 9 C -0.08 -0.97 10.03 -39.64 -0.40 -1.37 16 10 C -0.08 -1.17 9.62 -39.17 -0.38 -1.55 16 11 C -0.02 -0.40 5.86 -104.98 -0.62 -1.02 16 12 C 0.48 9.99 7.47 34.61 0.26 10.25 16 13 O -0.50 -10.63 8.77 -27.60 -0.24 -10.87 16 14 O -0.30 -6.91 9.03 -40.51 -0.37 -7.27 16 15 C 0.12 2.78 4.45 37.16 0.17 2.94 16 16 C 0.04 0.99 2.20 -155.66 -0.34 0.64 16 17 C -0.48 -12.17 8.80 -34.44 -0.30 -12.48 16 18 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 19 C 0.07 1.84 5.35 -17.82 -0.10 1.75 16 20 N -0.89 -22.81 10.19 55.43 0.56 -22.24 16 21 Si 0.90 19.80 29.54 -169.99 -5.02 14.77 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 C -0.19 -4.12 9.96 -26.69 -0.27 -4.39 16 26 C -0.21 -4.41 9.93 -26.69 -0.26 -4.68 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.16 2.58 5.43 -51.92 -0.28 2.30 16 32 H 0.15 1.66 7.21 -52.48 -0.38 1.28 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.15 2.41 7.61 -52.48 -0.40 2.01 16 36 H 0.03 0.69 7.92 -51.93 -0.41 0.28 16 37 H 0.12 3.08 5.90 -51.93 -0.31 2.77 16 38 H 0.26 6.48 8.32 -40.82 -0.34 6.14 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -31.02 361.15 -10.26 -41.28 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.55 Total: 6.75 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: -2.64 Total: -32.18 kcal Atomic # 7 Polarization: -22.81 SS G_CDS: 0.56 Total: -22.24 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -2.57 Total: -54.22 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 40.87 SS G_CDS: -0.48 Total: 40.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.02 -10.26 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.556 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds