Wall clock time and date at job start Tue Mar 31 2020 21:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81406 * 109.47155 * 2 1 4 4 O 1.42098 * 110.54612 * 68.37245 * 3 2 1 5 5 O 1.42099 * 110.53820 * 291.62090 * 3 2 1 6 6 C 1.76203 * 104.44794 * 179.97438 * 3 2 1 7 7 C 1.37959 * 120.07534 * 115.00062 * 6 3 2 8 8 C 1.38348 * 120.14954 * 180.25430 * 7 6 3 9 9 C 1.38395 * 120.30203 * 359.43944 * 8 7 6 10 10 C 1.37918 * 120.14566 * 0.55829 * 9 8 7 11 11 C 1.39606 * 120.07692 * 294.97541 * 6 3 2 12 12 C 1.47727 * 120.14867 * 359.97438 * 11 6 3 13 13 O 1.21475 * 119.99928 * 359.85011 * 12 11 6 14 14 O 1.34705 * 120.00140 * 179.85169 * 12 11 6 15 15 C 1.45206 * 116.99956 * 185.11148 * 14 12 11 16 16 C 1.53000 * 109.47048 * 184.86892 * 15 14 12 17 17 C 1.50705 * 115.54816 * 305.31057 * 16 15 14 18 18 H 1.08002 * 119.99920 * 145.00922 * 17 16 15 19 19 C 1.37870 * 120.00248 * 325.00374 * 17 16 15 20 20 N 1.31520 * 119.99746 * 3.16917 * 19 17 16 21 21 Si 1.86794 * 120.00460 * 183.16986 * 19 17 16 22 22 H 1.48502 * 109.47125 * 89.99633 * 21 19 17 23 23 H 1.48502 * 109.47358 * 210.00293 * 21 19 17 24 24 H 1.48506 * 109.47023 * 329.99992 * 21 19 17 25 25 C 1.52997 * 117.49965 * 159.63919 * 16 15 14 26 26 C 1.53003 * 117.49848 * 90.97806 * 16 15 14 27 27 H 1.08996 * 109.47121 * 300.00638 * 1 2 3 28 28 H 1.09004 * 109.47226 * 59.99864 * 1 2 3 29 29 H 1.08991 * 109.47473 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47571 * 239.99961 * 2 1 3 31 31 H 1.09003 * 109.47174 * 119.99585 * 2 1 3 32 32 H 1.08007 * 119.92894 * 359.96979 * 7 6 3 33 33 H 1.08000 * 119.85238 * 179.72154 * 8 7 6 34 34 H 1.07994 * 119.92513 * 180.30196 * 9 8 7 35 35 H 1.08003 * 120.07397 * 179.69641 * 10 9 8 36 36 H 1.09000 * 109.47010 * 304.86702 * 15 14 12 37 37 H 1.08997 * 109.47567 * 64.86774 * 15 14 12 38 38 H 0.97003 * 120.00074 * 185.00291 * 20 19 17 39 39 H 1.08997 * 117.50285 * 359.97438 * 25 16 15 40 40 H 1.09004 * 117.50114 * 145.02424 * 25 16 15 41 41 H 1.09007 * 117.50012 * 214.97799 * 26 16 15 42 42 H 1.08999 * 117.50050 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3440 1.2369 5 8 1.8386 2.3438 -1.2370 6 6 3.8899 1.5560 0.0008 7 6 4.6233 1.9979 -1.0810 8 6 6.0011 1.8728 -1.0843 9 6 6.6541 1.3147 0.0008 10 6 5.9332 0.8689 1.0888 11 6 4.5418 0.9868 1.0962 12 6 3.7631 0.5124 2.2586 13 8 2.5532 0.6197 2.2637 14 8 4.3949 -0.0391 3.3127 15 6 3.5614 -0.5863 4.3684 16 6 4.4459 -1.0543 5.5257 17 6 5.5345 -2.0297 5.1584 18 1 6.4864 -1.9934 5.6675 19 6 5.3153 -2.9684 4.1728 20 7 4.1793 -2.9729 3.5100 21 14 6.6315 -4.2339 3.7786 22 1 6.4296 -5.4379 4.6241 23 1 6.5398 -4.6138 2.3460 24 1 7.9718 -3.6558 4.0525 25 6 3.7883 -1.2134 6.8979 26 6 4.7454 -0.0474 6.6380 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.1203 2.4385 -1.9292 33 1 6.5701 2.2162 -1.9355 34 1 7.7303 1.2244 -0.0061 35 1 6.4436 0.4291 1.9329 36 1 2.8744 0.1818 4.7238 37 1 2.9925 -1.4315 3.9810 38 1 3.9952 -3.6763 2.8679 39 1 2.7256 -0.9842 6.9764 40 1 4.1433 -2.0232 7.5354 41 1 5.7297 -0.0906 7.1045 42 1 4.3126 0.9487 6.5451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:36 Heat of formation + Delta-G solvation = -100.319431 kcal Electronic energy + Delta-G solvation = -28362.208721 eV Core-core repulsion = 24401.001694 eV Total energy + Delta-G solvation = -3961.207026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66569 -39.86788 -38.70931 -37.95015 -36.96894 -36.79778 -34.19001 -33.99425 -32.69320 -32.40952 -28.50976 -27.44545 -25.44397 -25.10495 -23.89357 -23.04451 -22.11863 -21.11363 -19.96374 -19.33345 -18.62353 -18.29147 -17.62823 -17.35394 -17.06625 -17.01362 -16.54959 -16.04994 -15.87363 -15.60896 -15.37158 -15.12650 -14.82975 -14.36001 -14.06476 -13.86879 -13.76926 -13.50057 -13.35820 -13.28656 -13.08485 -12.96962 -12.95567 -12.73951 -12.63818 -12.38532 -12.28243 -12.11311 -11.96047 -11.67467 -11.40309 -11.26887 -11.23556 -10.90258 -10.69613 -10.50627 -10.22444 -10.16706 -8.00487 -6.18711 -0.93523 -0.64957 -0.03893 1.42891 1.45174 1.46461 1.54390 1.74148 1.89299 2.42273 2.43124 2.81940 3.02148 3.25333 3.48009 3.63456 3.74261 3.75665 3.88616 3.99663 4.18142 4.25277 4.27547 4.35741 4.37641 4.41598 4.58588 4.70180 4.72865 4.77188 4.87546 4.89449 4.93063 4.99122 5.05600 5.08313 5.17318 5.22062 5.42170 5.49737 5.67647 5.72178 5.84990 6.32472 6.70632 6.84738 7.44839 8.93750 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.004643 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.829858 B = 6028.870951 C = 6725.999149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.594 4.594 3 S 2.507 3.493 4 O -0.957 6.957 5 O -0.967 6.967 6 C -0.625 4.625 7 C -0.042 4.042 8 C -0.094 4.094 9 C -0.072 4.072 10 C -0.089 4.089 11 C -0.056 4.056 12 C 0.469 3.531 13 O -0.513 6.513 14 O -0.317 6.317 15 C 0.127 3.873 16 C 0.006 3.994 17 C -0.493 4.493 18 H 0.056 0.944 19 C 0.033 3.967 20 N -0.904 5.904 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.268 1.268 25 C -0.184 4.184 26 C -0.193 4.193 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.133 0.867 32 H 0.171 0.829 33 H 0.187 0.813 34 H 0.178 0.822 35 H 0.141 0.859 36 H 0.026 0.974 37 H 0.099 0.901 38 H 0.260 0.740 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 5.924 -12.137 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.727 4.727 3 S 2.690 3.310 4 O -0.955 6.955 5 O -0.964 6.964 6 C -0.712 4.712 7 C -0.061 4.061 8 C -0.113 4.113 9 C -0.089 4.089 10 C -0.108 4.108 11 C -0.058 4.058 12 C 0.315 3.685 13 O -0.406 6.406 14 O -0.231 6.231 15 C 0.054 3.946 16 C 0.005 3.995 17 C -0.530 4.530 18 H 0.074 0.926 19 C -0.166 4.166 20 N -0.543 5.543 21 Si 0.779 3.221 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.222 4.222 26 C -0.230 4.230 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.171 0.829 31 H 0.151 0.849 32 H 0.188 0.812 33 H 0.204 0.796 34 H 0.195 0.805 35 H 0.159 0.841 36 H 0.044 0.956 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.048 6.664 -12.256 13.990 hybrid contribution 0.799 -1.482 0.566 1.776 sum 1.846 5.182 -11.690 12.919 Atomic orbital electron populations 1.21613 0.89277 1.06234 1.03609 1.30209 1.08218 1.21425 1.12821 1.04978 0.74208 0.78711 0.73151 1.93561 1.83058 1.74072 1.44784 1.93475 1.83600 1.74008 1.45353 1.30702 1.26874 1.12384 1.01199 1.21395 0.95664 0.93603 0.95431 1.22097 0.93680 0.95949 0.99543 1.21958 1.02531 0.93145 0.91274 1.21875 0.91971 0.96581 1.00372 1.18828 0.95377 1.00644 0.90939 1.21814 0.86716 0.75650 0.84313 1.90796 1.15479 1.53535 1.80822 1.86489 1.41190 1.66689 1.28750 1.22788 0.91189 0.95757 0.84873 1.19116 0.97618 0.97129 0.85623 1.20661 0.98446 1.14948 1.18991 0.92589 1.25567 0.97515 0.99101 0.94459 1.69912 1.24990 1.32953 1.26449 0.85621 0.79907 0.79332 0.77193 1.20418 1.20976 1.19251 1.23004 0.96877 1.00328 1.01972 1.22978 1.00027 0.93586 1.06425 0.91817 0.89397 0.88175 0.82917 0.84948 0.81184 0.79625 0.80488 0.84122 0.95593 0.88358 0.92979 0.90102 0.89474 0.89531 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.92 71.98 0.71 -2.96 16 2 C -0.59 -17.09 6.05 71.98 0.44 -16.65 16 3 S 2.51 82.90 4.50 -56.49 -0.25 82.65 16 4 O -0.96 -40.38 14.83 -118.12 -1.75 -42.13 16 5 O -0.97 -31.32 16.74 -127.65 -2.14 -33.45 16 6 C -0.63 -19.54 5.61 22.53 0.13 -19.41 16 7 C -0.04 -0.98 9.49 22.23 0.21 -0.77 16 8 C -0.09 -1.61 10.04 22.33 0.22 -1.38 16 9 C -0.07 -1.42 10.03 22.23 0.22 -1.20 16 10 C -0.09 -2.67 9.62 22.53 0.22 -2.45 16 11 C -0.06 -2.01 5.86 -20.10 -0.12 -2.12 16 12 C 0.47 20.57 7.47 70.33 0.53 21.09 16 13 O -0.51 -23.24 8.77 27.91 0.24 -23.00 16 14 O -0.32 -15.26 9.03 -56.15 -0.51 -15.77 16 15 C 0.13 6.30 4.45 71.98 0.32 6.62 16 16 C 0.01 0.27 2.20 -52.93 -0.12 0.15 16 17 C -0.49 -25.65 8.80 25.60 0.23 -25.43 16 18 H 0.06 2.90 7.82 -2.91 -0.02 2.87 16 19 C 0.03 1.71 5.35 84.65 0.45 2.17 16 20 N -0.90 -47.77 10.19 21.45 0.22 -47.55 16 21 Si 0.95 40.73 29.54 68.60 2.03 42.76 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 C -0.18 -7.88 9.96 30.62 0.30 -7.58 16 26 C -0.19 -8.13 9.93 30.62 0.30 -7.82 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.13 4.60 5.43 -2.39 -0.01 4.59 16 32 H 0.17 3.18 7.21 -2.91 -0.02 3.16 16 33 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.14 4.50 7.61 -2.91 -0.02 4.48 16 36 H 0.03 1.26 7.92 -2.39 -0.02 1.24 16 37 H 0.10 5.29 5.90 -2.39 -0.01 5.27 16 38 H 0.26 13.21 8.32 -92.71 -0.77 12.43 16 39 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 42 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -70.18 361.15 2.92 -67.26 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 1.04 Total: 26.98 kcal Atomic # 6 Polarization: -61.80 SS G_CDS: 4.05 Total: -57.75 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.22 Total: -47.55 kcal Atomic # 8 Polarization: -110.20 SS G_CDS: -4.15 Total: -114.35 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 82.90 SS G_CDS: -0.25 Total: 82.65 kcal Total: -70.18 2.92 -67.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.059 kcal (2) G-P(sol) polarization free energy of solvation -70.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds