Wall clock time and date at job start Tue Mar 31 2020 20:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37969 * 120.07591 * 2 1 4 4 C 1.38344 * 120.14992 * 179.97438 * 3 2 1 5 5 C 1.38391 * 120.30338 * 0.02562 * 4 3 2 6 6 S 1.76203 * 119.92517 * 180.02562 * 5 4 3 7 7 C 1.81401 * 104.44932 * 89.99955 * 6 5 4 8 8 O 1.42092 * 104.28005 * 206.06988 * 6 5 4 9 9 O 1.42100 * 104.27657 * 333.92891 * 6 5 4 10 10 C 1.37919 * 120.15323 * 0.04413 * 5 4 3 11 11 C 1.39612 * 120.07690 * 179.73119 * 2 1 3 12 12 C 1.47725 * 120.14777 * 359.97438 * 11 2 1 13 13 O 1.21463 * 120.00279 * 5.63523 * 12 11 2 14 14 O 1.34712 * 119.99611 * 185.63441 * 12 11 2 15 15 C 1.45203 * 116.99707 * 185.14467 * 14 12 11 16 16 C 1.52998 * 109.47030 * 175.13933 * 15 14 12 17 17 C 1.50705 * 115.54990 * 186.93128 * 16 15 14 18 18 H 1.07999 * 120.00408 * 147.81818 * 17 16 15 19 19 C 1.37875 * 119.99769 * 327.82223 * 17 16 15 20 20 N 1.31515 * 120.00204 * 165.24181 * 19 17 16 21 21 Si 1.86807 * 120.00028 * 345.24558 * 19 17 16 22 22 H 1.48493 * 109.47164 * 95.30670 * 21 19 17 23 23 H 1.48504 * 109.46777 * 215.30442 * 21 19 17 24 24 H 1.48494 * 109.46905 * 335.30252 * 21 19 17 25 25 C 1.52998 * 117.50289 * 41.25625 * 16 15 14 26 26 C 1.53001 * 117.50108 * 332.59526 * 16 15 14 27 27 H 1.09008 * 109.46777 * 97.80882 * 1 2 3 28 28 H 1.09000 * 109.46950 * 337.80774 * 1 2 3 29 29 H 1.08998 * 109.46920 * 217.80511 * 1 2 3 30 30 H 1.07999 * 119.92510 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.84961 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.47488 * 59.99881 * 7 6 5 33 33 H 1.09001 * 109.47117 * 180.02562 * 7 6 5 34 34 H 1.09008 * 109.47036 * 299.99975 * 7 6 5 35 35 H 1.07994 * 120.07997 * 179.97438 * 10 5 4 36 36 H 1.08998 * 109.46865 * 295.13415 * 15 14 12 37 37 H 1.09005 * 109.47343 * 55.13604 * 15 14 12 38 38 H 0.97001 * 120.00531 * 179.97438 * 20 19 17 39 39 H 1.08996 * 117.49503 * 0.02562 * 25 16 15 40 40 H 1.08996 * 117.49849 * 145.01753 * 25 16 15 41 41 H 1.08993 * 117.50319 * 214.98761 * 26 16 15 42 42 H 1.09005 * 117.49344 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1957 0.0005 5 6 4.2817 0.0018 0.0005 6 16 6.0437 0.0157 0.0019 7 6 6.4949 0.0185 1.7589 8 8 6.4044 -1.2181 -0.6035 9 8 6.3848 1.2557 -0.6025 10 6 3.6032 -1.1989 -0.0009 11 6 2.2067 -1.2081 0.0057 12 6 1.4731 -2.4903 0.0123 13 8 0.2628 -2.4982 -0.0905 14 8 2.1464 -3.6509 0.1322 15 6 1.3750 -4.8756 0.0159 16 6 2.3192 -6.0788 0.0568 17 6 1.6802 -7.4160 -0.2166 18 1 2.2449 -8.1939 -0.7089 19 6 0.3745 -7.6463 0.1617 20 7 -0.2770 -8.6818 -0.3207 21 14 -0.4691 -6.4874 1.3596 22 1 -1.2469 -5.4737 0.6030 23 1 -1.3850 -7.2616 2.2354 24 1 0.5540 -5.8059 2.1927 25 6 3.4714 -6.0389 1.0626 26 6 3.7536 -5.8682 -0.4322 27 1 -0.3633 -0.1396 -1.0182 28 1 -0.3633 0.9515 0.3882 29 1 -0.3633 -0.8119 0.6299 30 1 1.6584 2.1292 0.0004 31 1 4.1182 2.1331 0.0010 32 1 6.0947 -0.8748 2.2383 33 1 7.5806 0.0275 1.8551 34 1 6.0806 0.9051 2.2390 35 1 4.1505 -2.1299 -0.0013 36 1 0.6685 -4.9399 0.8434 37 1 0.8299 -4.8734 -0.9280 38 1 -1.1955 -8.8441 -0.0543 39 1 3.5566 -5.1556 1.6954 40 1 3.7675 -6.9798 1.5263 41 1 4.2352 -6.6968 -0.9513 42 1 4.0245 -4.8725 -0.7834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:14 Heat of formation + Delta-G solvation = -107.853326 kcal Electronic energy + Delta-G solvation = -27373.011717 eV Core-core repulsion = 23411.477996 eV Total energy + Delta-G solvation = -3961.533720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98274 -40.24652 -38.82829 -38.13028 -37.09852 -36.96022 -34.46307 -34.06055 -32.76440 -30.27780 -29.72164 -28.59305 -27.34768 -25.24826 -23.29115 -23.11356 -22.41545 -21.15245 -20.13998 -19.27738 -18.89341 -18.33447 -17.85056 -17.15355 -17.12561 -16.97337 -16.66760 -16.46235 -16.04309 -15.68329 -15.46620 -14.99322 -14.90688 -14.50353 -14.39821 -13.99260 -13.89862 -13.61702 -13.46824 -13.34953 -13.22045 -13.14660 -13.10764 -13.06974 -12.86074 -12.74524 -12.40903 -12.12114 -12.07455 -11.92062 -11.70713 -11.49558 -11.25996 -11.20638 -10.68747 -10.41910 -10.29927 -10.23426 -8.48475 -6.42728 -0.87623 -0.60895 -0.20989 1.19374 1.21985 1.22364 1.28301 1.47987 1.89036 2.15453 2.29559 2.69347 3.02190 3.09847 3.33307 3.43566 3.62064 3.63469 3.87071 3.92256 3.96010 4.08052 4.11227 4.15594 4.23344 4.38240 4.40903 4.56401 4.63867 4.66619 4.71424 4.79835 4.89331 4.92548 4.95055 5.01906 5.08320 5.15787 5.23511 5.41400 5.52305 5.55073 5.60983 6.17021 6.49702 6.55776 7.14417 8.68073 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.003717 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.001839 B = 7530.327518 C = 8954.497729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.023 3.977 3 C -0.143 4.143 4 C 0.017 3.983 5 C -0.681 4.681 6 S 2.508 3.492 7 C -0.625 4.625 8 O -0.978 6.978 9 O -0.964 6.964 10 C 0.027 3.973 11 C -0.168 4.168 12 C 0.493 3.507 13 O -0.526 6.526 14 O -0.344 6.344 15 C 0.097 3.903 16 C -0.032 4.032 17 C -0.489 4.489 18 H 0.052 0.948 19 C 0.032 3.968 20 N -0.926 5.926 21 Si 0.926 3.074 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.244 1.244 25 C -0.179 4.179 26 C -0.162 4.162 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.180 0.820 31 H 0.182 0.818 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.272 0.728 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.672 27.369 7.306 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.022 3.978 3 C -0.161 4.161 4 C -0.001 4.001 5 C -0.765 4.765 6 S 2.690 3.310 7 C -0.779 4.779 8 O -0.975 6.975 9 O -0.962 6.962 10 C 0.008 3.992 11 C -0.170 4.170 12 C 0.340 3.660 13 O -0.418 6.418 14 O -0.260 6.260 15 C 0.024 3.976 16 C -0.033 4.033 17 C -0.526 4.526 18 H 0.070 0.930 19 C -0.168 4.168 20 N -0.564 5.564 21 Si 0.754 3.246 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.169 1.169 25 C -0.217 4.217 26 C -0.200 4.200 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.198 0.802 31 H 0.200 0.800 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.636 27.189 6.521 29.915 hybrid contribution -1.717 -0.738 0.602 1.963 sum 8.919 26.452 7.123 28.809 Atomic orbital electron populations 1.21242 0.89220 1.04552 1.03756 1.20618 0.97662 0.91542 0.87967 1.21567 0.94402 0.97875 1.02266 1.21664 0.94745 0.97548 0.86164 1.30796 1.27268 0.98529 1.19951 1.04939 0.73010 0.73173 0.79844 1.30052 1.14145 1.14461 1.19253 1.93578 1.81844 1.46156 1.75956 1.93544 1.82048 1.44868 1.75707 1.21300 0.92700 0.98703 0.86518 1.19129 0.94227 0.89635 1.13998 1.21779 0.86133 0.85362 0.72689 1.90785 1.15955 1.88143 1.46904 1.86478 1.42644 1.14634 1.82235 1.23138 0.93710 0.80034 1.00683 1.19272 0.88333 0.91143 1.04566 1.20433 0.97475 0.96095 1.38595 0.93023 1.25651 0.97506 0.96885 0.96788 1.70019 1.11791 1.31467 1.43144 0.86293 0.78883 0.78489 0.80912 1.20393 1.21069 1.16907 1.23112 1.04674 1.01965 0.91943 1.22819 0.98085 1.01863 0.97189 0.90305 0.87915 0.90984 0.80237 0.80045 0.83488 0.82677 0.82007 0.83082 0.92467 0.92268 0.91858 0.88708 0.89566 0.89933 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.70 71.24 0.62 -2.13 16 2 C 0.02 0.48 5.92 -19.60 -0.12 0.36 16 3 C -0.14 -1.92 9.66 22.23 0.21 -1.71 16 4 C 0.02 0.22 9.47 22.33 0.21 0.43 16 5 C -0.68 -11.46 5.65 22.23 0.13 -11.34 16 6 S 2.51 35.57 5.80 -56.49 -0.33 35.24 16 7 C -0.63 -2.30 10.80 113.37 1.22 -1.08 16 8 O -0.98 -23.48 17.12 -127.65 -2.18 -25.67 16 9 O -0.96 -17.92 17.12 -127.65 -2.18 -20.10 16 10 C 0.03 0.63 9.04 22.54 0.20 0.83 16 11 C -0.17 -4.60 5.87 -20.10 -0.12 -4.72 16 12 C 0.49 17.85 7.83 70.33 0.55 18.40 16 13 O -0.53 -21.25 13.13 19.95 0.26 -20.98 16 14 O -0.34 -13.49 7.77 -56.22 -0.44 -13.93 16 15 C 0.10 4.49 3.99 71.98 0.29 4.78 16 16 C -0.03 -1.55 1.93 -52.93 -0.10 -1.65 16 17 C -0.49 -28.04 9.58 25.60 0.25 -27.80 16 18 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 19 C 0.03 1.86 5.41 84.65 0.46 2.32 16 20 N -0.93 -57.15 13.96 21.45 0.30 -56.85 16 21 Si 0.93 45.62 24.14 68.60 1.66 47.28 16 22 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.24 -11.27 6.41 99.48 0.64 -10.63 16 25 C -0.18 -7.32 9.67 30.62 0.30 -7.02 16 26 C -0.16 -6.69 9.62 30.62 0.29 -6.39 16 27 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.10 1.33 8.03 -2.39 -0.02 1.31 16 29 H 0.07 1.95 5.91 -2.39 -0.01 1.93 16 30 H 0.18 1.03 8.05 -2.91 -0.02 1.01 16 31 H 0.18 1.07 7.56 -2.91 -0.02 1.04 16 32 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.15 3.69 7.13 -2.91 -0.02 3.66 16 36 H 0.06 2.75 2.68 -2.39 -0.01 2.74 16 37 H 0.06 2.90 8.10 -2.38 -0.02 2.88 16 38 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 39 H 0.09 3.43 7.89 -2.39 -0.02 3.41 16 40 H 0.09 3.49 8.14 -2.39 -0.02 3.48 16 41 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.10 3.72 7.44 -2.38 -0.02 3.70 16 Total: -1.00 -82.23 360.78 2.46 -79.77 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.98 Total: 11.97 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 4.39 Total: -36.72 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.30 Total: -56.85 kcal Atomic # 8 Polarization: -76.14 SS G_CDS: -4.54 Total: -80.69 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.66 Total: 47.28 kcal Atomic # 16 Polarization: 35.57 SS G_CDS: -0.33 Total: 35.24 kcal Total: -82.23 2.46 -79.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.083 kcal (2) G-P(sol) polarization free energy of solvation -82.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds