Wall clock time and date at job start Tue Mar 31 2020 21:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30999 * 120.00015 * 2 1 4 4 C 1.50704 * 119.99889 * 0.02562 * 3 2 1 5 5 O 1.45196 * 109.47016 * 135.00078 * 4 3 2 6 6 C 1.34715 * 116.99791 * 180.02562 * 5 4 3 7 7 O 1.21462 * 119.99987 * 359.97438 * 6 5 4 8 8 C 1.47727 * 119.99550 * 179.97438 * 6 5 4 9 9 C 1.39627 * 120.15141 * 359.73064 * 8 6 5 10 10 C 1.37947 * 119.84105 * 179.71949 * 9 8 6 11 11 C 1.38360 * 120.15483 * 0.55279 * 10 9 8 12 12 S 1.76203 * 119.84951 * 179.70042 * 11 10 9 13 13 O 1.42100 * 104.27951 * 26.09125 * 12 11 10 14 14 O 1.42096 * 104.27802 * 153.95022 * 12 11 10 15 15 C 1.81398 * 104.44763 * 270.01789 * 12 11 10 16 16 C 1.53006 * 109.47083 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.47152 * 180.02562 * 16 15 12 18 18 H 1.08004 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00189 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00086 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47070 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47147 * 120.00092 * 21 19 17 24 24 H 1.48506 * 109.46931 * 240.00162 * 21 19 17 25 25 C 1.38368 * 120.30470 * 359.71940 * 11 10 9 26 26 C 1.37945 * 120.14585 * 359.97438 * 25 11 10 27 27 H 1.08996 * 109.47304 * 299.99823 * 1 2 3 28 28 H 1.08995 * 109.47499 * 60.00209 * 1 2 3 29 29 H 1.09007 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00166 * 180.02562 * 2 1 3 31 31 H 1.08001 * 120.00186 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46943 * 14.99833 * 4 3 2 33 33 H 1.08999 * 109.47285 * 254.99973 * 4 3 2 34 34 H 1.07992 * 120.07491 * 359.97438 * 9 8 6 35 35 H 1.08003 * 119.91997 * 180.24687 * 10 9 8 36 36 H 1.09002 * 109.47708 * 300.00000 * 15 12 11 37 37 H 1.09001 * 109.47386 * 60.00343 * 15 12 11 38 38 H 1.08997 * 109.47219 * 300.00188 * 16 15 12 39 39 H 1.08996 * 109.46626 * 60.00565 * 16 15 12 40 40 H 0.96997 * 120.00002 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.92868 * 179.97438 * 25 11 10 42 42 H 1.07997 * 120.07465 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 8 2.0051 3.3425 0.9685 6 6 1.4451 4.5613 1.0942 7 8 0.4851 4.8616 0.4135 8 6 1.9988 5.5325 2.0599 9 6 3.0989 5.1884 2.8479 10 6 3.6144 6.1023 3.7435 11 6 3.0368 7.3532 3.8701 12 16 3.6969 8.5115 5.0222 13 8 5.0601 8.1338 5.1569 14 8 3.3370 9.7790 4.4902 15 6 2.7913 8.1864 6.5600 16 6 3.2807 9.1404 7.6515 17 6 2.5289 8.8699 8.9292 18 1 1.7774 8.0948 8.9599 19 6 2.8003 9.6119 10.0592 20 7 3.7150 10.5561 10.0218 21 14 1.8688 9.2762 11.6432 22 1 0.9002 8.1722 11.4233 23 1 2.8277 8.8891 12.7088 24 1 1.1374 10.5008 12.0564 25 6 1.9429 7.6987 3.0963 26 6 1.4212 6.7968 2.1923 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 2.0470 -0.9353 -0.0004 31 1 3.2420 1.1345 -0.0004 32 1 0.3673 2.2578 0.2669 33 1 1.4567 2.8875 -0.9920 34 1 3.5477 4.2107 2.7535 35 1 4.4678 5.8390 4.3509 36 1 1.7252 8.3406 6.3935 37 1 2.9649 7.1569 6.8733 38 1 4.3468 8.9858 7.8180 39 1 3.1074 10.1700 7.3386 40 1 3.9062 11.0779 10.8168 41 1 1.4966 8.6766 3.2004 42 1 0.5672 7.0675 1.5893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748407391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:56 Heat of formation + Delta-G solvation = -120.110225 kcal Electronic energy + Delta-G solvation = -25452.469138 eV Core-core repulsion = 21490.403919 eV Total energy + Delta-G solvation = -3962.065220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98060 -39.11180 -37.26363 -36.69652 -35.69135 -35.53102 -33.95731 -32.05461 -31.36968 -31.22660 -29.08520 -26.40731 -25.68338 -24.67330 -23.06565 -21.78935 -21.28483 -19.35527 -18.82840 -18.40164 -17.76266 -17.22200 -16.94046 -16.45563 -15.91773 -15.60097 -15.36983 -14.99637 -14.82444 -14.60174 -14.43674 -13.95842 -13.81858 -13.59148 -13.48684 -13.44795 -12.96186 -12.92003 -12.54333 -12.32175 -11.82169 -11.69329 -11.65837 -11.58080 -11.43802 -11.12753 -11.12711 -11.07549 -11.01342 -10.70896 -10.44958 -10.40796 -9.86582 -9.67762 -9.62721 -9.34484 -9.18205 -8.54251 -6.16341 -4.22165 -0.02318 0.50009 1.02104 1.39589 2.03169 2.37112 3.19667 3.23585 3.31190 3.32391 3.34655 4.11945 4.21991 4.29662 4.35372 4.36842 4.49272 4.60842 4.63287 4.72581 4.76215 4.88282 5.02869 5.09854 5.11158 5.19341 5.29174 5.35756 5.45434 5.57803 5.61893 5.66949 5.69430 5.82572 5.91908 5.97746 6.01108 6.15818 6.38360 6.44570 7.24868 7.29977 7.30343 7.76785 8.11669 8.81461 9.42962 10.94541 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.002148 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.822985 B =13032.095767 C =13891.309749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C -0.169 4.169 4 C 0.093 3.907 5 O -0.347 6.347 6 C 0.510 3.490 7 O -0.500 6.500 8 C -0.086 4.086 9 C -0.084 4.084 10 C -0.038 4.038 11 C -0.622 4.622 12 S 2.470 3.530 13 O -0.941 6.941 14 O -0.941 6.941 15 C -0.562 4.562 16 C 0.025 3.975 17 C -0.521 4.521 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.036 4.036 26 C -0.077 4.077 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.265 0.735 41 H 0.154 0.846 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 -18.167 -19.534 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.187 4.187 4 C 0.020 3.980 5 O -0.263 6.263 6 C 0.354 3.646 7 O -0.389 6.389 8 C -0.087 4.087 9 C -0.103 4.103 10 C -0.056 4.056 11 C -0.705 4.705 12 S 2.652 3.348 13 O -0.938 6.938 14 O -0.938 6.938 15 C -0.695 4.695 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.054 4.054 26 C -0.096 4.096 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.172 0.828 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.163 -17.414 -19.928 26.790 hybrid contribution -1.105 -0.895 0.648 1.563 sum -5.269 -18.309 -19.281 27.106 Atomic orbital electron populations 1.21005 0.93128 1.02993 1.02386 1.22919 0.96492 0.97811 0.98116 1.22522 1.00591 0.92069 1.03496 1.22150 0.97021 0.87117 0.91703 1.86561 1.57338 1.24397 1.58041 1.21197 0.80972 0.81048 0.81359 1.90844 1.26145 1.78022 1.43875 1.19362 0.98263 0.93616 0.97445 1.21584 0.94313 1.00310 0.94103 1.21049 0.97683 0.90826 0.96089 1.31470 1.07858 1.13482 1.17703 1.06583 0.76356 0.74514 0.77351 1.93535 1.30563 1.83178 1.86551 1.93536 1.84439 1.37893 1.77958 1.30195 1.12939 1.11340 1.15052 1.19054 0.97947 0.92957 0.91384 1.21018 1.21595 1.19345 0.94061 0.91864 1.25067 0.95245 0.94900 0.99264 1.69958 1.31693 1.21385 1.29642 0.86403 0.79680 0.78262 0.82879 1.19632 1.20783 1.20792 1.21012 0.92577 0.99618 0.92223 1.21384 0.99357 0.91368 0.97463 0.91077 0.91275 0.91506 0.86125 0.85893 0.90027 0.90051 0.83582 0.82962 0.85622 0.85623 0.94495 0.94494 0.92523 0.82840 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.70 36.01 0.31 -0.35 16 2 C -0.14 -0.73 10.26 -36.03 -0.37 -1.10 16 3 C -0.17 -1.09 9.90 -36.02 -0.36 -1.45 16 4 C 0.09 0.75 5.60 36.01 0.20 0.95 16 5 O -0.35 -3.49 9.46 -40.53 -0.38 -3.87 16 6 C 0.51 5.91 7.90 34.61 0.27 6.19 16 7 O -0.50 -6.70 16.14 -19.24 -0.31 -7.01 16 8 C -0.09 -0.99 5.87 -104.98 -0.62 -1.61 16 9 C -0.08 -0.90 9.62 -39.17 -0.38 -1.28 16 10 C -0.04 -0.45 9.45 -39.64 -0.37 -0.83 16 11 C -0.62 -8.37 5.66 -39.49 -0.22 -8.60 16 12 S 2.47 40.97 5.15 -107.50 -0.55 40.42 16 13 O -0.94 -17.90 17.11 -57.54 -0.98 -18.88 16 14 O -0.94 -18.00 17.11 -57.54 -0.98 -18.98 16 15 C -0.56 -9.85 5.92 37.16 0.22 -9.63 16 16 C 0.03 0.61 4.98 -27.88 -0.14 0.47 16 17 C -0.52 -13.83 9.11 -34.44 -0.31 -14.14 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 21 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.04 -0.44 9.45 -39.64 -0.37 -0.82 16 26 C -0.08 -0.88 9.60 -39.17 -0.38 -1.26 16 27 H 0.07 0.38 7.48 -51.93 -0.39 -0.01 16 28 H 0.07 0.31 8.02 -51.93 -0.42 -0.10 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.12 0.48 8.06 -52.48 -0.42 0.06 16 31 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.08 0.63 5.97 -51.93 -0.31 0.32 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.15 1.22 7.61 -52.49 -0.40 0.82 16 35 H 0.15 1.61 7.56 -52.48 -0.40 1.21 16 36 H 0.13 1.94 8.14 -51.92 -0.42 1.51 16 37 H 0.13 1.93 8.14 -51.92 -0.42 1.50 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.15 1.69 7.56 -52.49 -0.40 1.29 16 42 H 0.15 1.47 7.65 -52.49 -0.40 1.07 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -34.53 379.46 -10.03 -44.55 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.63 Total: -0.69 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: -2.61 Total: -31.96 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.74 Total: -24.98 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.66 Total: -48.74 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 40.97 SS G_CDS: -0.55 Total: 40.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.53 -10.03 -44.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748407391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.558 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds