Wall clock time and date at job start Tue Mar 31 2020 21:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30999 * 120.00015 * 2 1 4 4 C 1.50704 * 119.99889 * 0.02562 * 3 2 1 5 5 O 1.45196 * 109.47016 * 135.00078 * 4 3 2 6 6 C 1.34715 * 116.99791 * 180.02562 * 5 4 3 7 7 O 1.21462 * 119.99987 * 359.97438 * 6 5 4 8 8 C 1.47727 * 119.99550 * 179.97438 * 6 5 4 9 9 C 1.39627 * 120.15141 * 359.73064 * 8 6 5 10 10 C 1.37947 * 119.84105 * 179.71949 * 9 8 6 11 11 C 1.38360 * 120.15483 * 0.55279 * 10 9 8 12 12 S 1.76203 * 119.84951 * 179.70042 * 11 10 9 13 13 O 1.42100 * 104.27951 * 26.09125 * 12 11 10 14 14 O 1.42096 * 104.27802 * 153.95022 * 12 11 10 15 15 C 1.81398 * 104.44763 * 270.01789 * 12 11 10 16 16 C 1.53006 * 109.47083 * 179.97438 * 15 12 11 17 17 C 1.50699 * 109.47152 * 180.02562 * 16 15 12 18 18 H 1.08004 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00189 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00086 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47070 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47147 * 120.00092 * 21 19 17 24 24 H 1.48506 * 109.46931 * 240.00162 * 21 19 17 25 25 C 1.38368 * 120.30470 * 359.71940 * 11 10 9 26 26 C 1.37945 * 120.14585 * 359.97438 * 25 11 10 27 27 H 1.08996 * 109.47304 * 299.99823 * 1 2 3 28 28 H 1.08995 * 109.47499 * 60.00209 * 1 2 3 29 29 H 1.09007 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00166 * 180.02562 * 2 1 3 31 31 H 1.08001 * 120.00186 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46943 * 14.99833 * 4 3 2 33 33 H 1.08999 * 109.47285 * 254.99973 * 4 3 2 34 34 H 1.07992 * 120.07491 * 359.97438 * 9 8 6 35 35 H 1.08003 * 119.91997 * 180.24687 * 10 9 8 36 36 H 1.09002 * 109.47708 * 300.00000 * 15 12 11 37 37 H 1.09001 * 109.47386 * 60.00343 * 15 12 11 38 38 H 1.08997 * 109.47219 * 300.00188 * 16 15 12 39 39 H 1.08996 * 109.46626 * 60.00565 * 16 15 12 40 40 H 0.96997 * 120.00002 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.92868 * 179.97438 * 25 11 10 42 42 H 1.07997 * 120.07465 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 8 2.0051 3.3425 0.9685 6 6 1.4451 4.5613 1.0942 7 8 0.4851 4.8616 0.4135 8 6 1.9988 5.5325 2.0599 9 6 3.0989 5.1884 2.8479 10 6 3.6144 6.1023 3.7435 11 6 3.0368 7.3532 3.8701 12 16 3.6969 8.5115 5.0222 13 8 5.0601 8.1338 5.1569 14 8 3.3370 9.7790 4.4902 15 6 2.7913 8.1864 6.5600 16 6 3.2807 9.1404 7.6515 17 6 2.5289 8.8699 8.9292 18 1 1.7774 8.0948 8.9599 19 6 2.8003 9.6119 10.0592 20 7 3.7150 10.5561 10.0218 21 14 1.8688 9.2762 11.6432 22 1 0.9002 8.1722 11.4233 23 1 2.8277 8.8891 12.7088 24 1 1.1374 10.5008 12.0564 25 6 1.9429 7.6987 3.0963 26 6 1.4212 6.7968 2.1923 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 2.0470 -0.9353 -0.0004 31 1 3.2420 1.1345 -0.0004 32 1 0.3673 2.2578 0.2669 33 1 1.4567 2.8875 -0.9920 34 1 3.5477 4.2107 2.7535 35 1 4.4678 5.8390 4.3509 36 1 1.7252 8.3406 6.3935 37 1 2.9649 7.1569 6.8733 38 1 4.3468 8.9858 7.8180 39 1 3.1074 10.1700 7.3386 40 1 3.9062 11.0779 10.8168 41 1 1.4966 8.6766 3.2004 42 1 0.5672 7.0675 1.5893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748407391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:55 Heat of formation + Delta-G solvation = -140.984371 kcal Electronic energy + Delta-G solvation = -25453.374309 eV Core-core repulsion = 21490.403919 eV Total energy + Delta-G solvation = -3962.970390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84316 -40.01470 -38.14519 -38.03421 -36.98163 -36.24678 -35.86578 -33.12990 -32.97645 -32.28394 -29.61013 -27.60301 -26.97259 -25.56210 -23.97178 -23.49670 -22.28331 -20.07964 -19.90485 -19.31362 -19.02742 -18.40774 -17.90459 -17.68844 -17.08904 -16.92360 -16.49504 -16.31667 -15.91753 -15.83524 -15.19548 -15.07672 -14.69962 -14.52727 -14.48924 -14.30498 -14.13243 -13.78837 -13.74973 -13.67520 -13.14698 -13.06946 -12.93050 -12.75839 -12.68502 -12.42117 -12.24828 -12.21722 -12.11054 -12.05567 -11.82163 -11.71267 -11.60048 -11.07665 -10.62149 -10.61574 -10.24397 -10.11937 -8.23269 -6.36302 -1.06728 -0.78018 0.12085 0.87024 1.10766 1.43728 1.44101 1.57054 1.66556 1.97492 2.33792 2.41037 2.91246 3.10596 3.13662 3.37436 3.63308 3.75589 3.80162 3.99354 4.04940 4.05667 4.11363 4.21694 4.28121 4.30710 4.39317 4.42638 4.73289 4.76896 4.79776 4.80464 4.88210 4.95891 5.02553 5.07007 5.21438 5.32654 5.33397 5.53309 5.59880 5.72213 5.72629 6.09100 6.44989 6.77844 7.33627 8.88930 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.002148 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.822985 B =13032.095767 C =13891.309749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.184 4.184 4 C 0.088 3.912 5 O -0.345 6.345 6 C 0.514 3.486 7 O -0.522 6.522 8 C -0.088 4.088 9 C -0.074 4.074 10 C -0.042 4.042 11 C -0.622 4.622 12 S 2.493 3.507 13 O -0.970 6.970 14 O -0.972 6.972 15 C -0.562 4.562 16 C 0.016 3.984 17 C -0.535 4.535 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.933 5.933 21 Si 0.972 3.028 22 H -0.256 1.256 23 H -0.279 1.279 24 H -0.280 1.280 25 C -0.041 4.041 26 C -0.077 4.077 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.012 0.988 39 H 0.011 0.989 40 H 0.266 0.734 41 H 0.163 0.837 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 -20.880 -20.163 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.202 4.202 4 C 0.016 3.984 5 O -0.261 6.261 6 C 0.359 3.641 7 O -0.412 6.412 8 C -0.090 4.090 9 C -0.092 4.092 10 C -0.061 4.061 11 C -0.710 4.710 12 S 2.678 3.322 13 O -0.967 6.967 14 O -0.970 6.970 15 C -0.694 4.694 16 C -0.022 4.022 17 C -0.575 4.575 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.572 5.572 21 Si 0.796 3.204 22 H -0.180 1.180 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.060 4.060 26 C -0.095 4.095 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.180 0.820 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.370 -20.115 -20.520 29.232 hybrid contribution -0.750 -0.181 0.692 1.037 sum -6.120 -20.295 -19.828 29.026 Atomic orbital electron populations 1.21065 0.92912 1.03782 1.02205 1.23164 0.96832 0.98137 0.96233 1.22523 1.00892 0.91527 1.05261 1.22348 0.97379 0.87434 0.91266 1.86553 1.57206 1.23916 1.58449 1.21179 0.80560 0.81423 0.80932 1.90837 1.27127 1.78509 1.44745 1.19538 0.98393 0.93655 0.97375 1.21817 0.93572 1.01015 0.92822 1.21287 0.97961 0.90296 0.96529 1.30801 1.09143 1.13340 1.17734 1.05422 0.75451 0.74265 0.77018 1.93492 1.32474 1.83688 1.87067 1.93491 1.84722 1.40398 1.78341 1.30073 1.14377 1.10943 1.14000 1.18908 0.96671 0.93376 0.93287 1.21544 1.21648 1.19241 0.95025 0.90469 1.26078 0.96196 0.94719 1.03237 1.70099 1.33636 1.22773 1.30738 0.85296 0.78452 0.78451 0.78239 1.17962 1.20501 1.20604 1.21166 0.92277 1.00311 0.92218 1.21527 0.99630 0.91226 0.97165 0.91598 0.91100 0.90294 0.84455 0.85306 0.89924 0.90002 0.80955 0.81668 0.83288 0.83111 0.96923 0.97037 0.92464 0.81955 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.70 71.24 0.62 -0.48 16 2 C -0.13 -1.07 10.26 25.65 0.26 -0.80 16 3 C -0.18 -2.02 9.90 25.65 0.25 -1.77 16 4 C 0.09 1.28 5.60 71.24 0.40 1.68 16 5 O -0.34 -6.23 9.46 -56.24 -0.53 -6.77 16 6 C 0.51 10.93 7.90 70.33 0.56 11.49 16 7 O -0.52 -13.22 16.14 19.96 0.32 -12.90 16 8 C -0.09 -1.84 5.87 -20.10 -0.12 -1.95 16 9 C -0.07 -1.36 9.62 22.54 0.22 -1.15 16 10 C -0.04 -0.91 9.45 22.23 0.21 -0.70 16 11 C -0.62 -15.85 5.66 22.33 0.13 -15.72 16 12 S 2.49 82.72 5.15 -56.49 -0.29 82.43 16 13 O -0.97 -37.23 17.11 -127.65 -2.18 -39.41 16 14 O -0.97 -37.82 17.11 -127.65 -2.18 -40.01 16 15 C -0.56 -19.45 5.92 71.98 0.43 -19.02 16 16 C 0.02 0.80 4.98 29.85 0.15 0.95 16 17 C -0.54 -28.56 9.11 25.60 0.23 -28.32 16 18 H 0.08 3.79 7.74 -2.91 -0.02 3.76 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 21 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 25 C -0.04 -0.95 9.45 22.23 0.21 -0.74 16 26 C -0.08 -1.61 9.60 22.54 0.22 -1.40 16 27 H 0.07 0.59 7.48 -2.39 -0.02 0.58 16 28 H 0.07 0.53 8.02 -2.39 -0.02 0.51 16 29 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.14 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.13 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.08 1.17 5.97 -2.39 -0.01 1.15 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.17 2.26 7.61 -2.91 -0.02 2.24 16 35 H 0.17 3.13 7.56 -2.91 -0.02 3.11 16 36 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 37 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 38 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.16 3.38 7.56 -2.91 -0.02 3.36 16 42 H 0.16 2.89 7.65 -2.91 -0.02 2.87 16 Total: -1.00 -75.05 379.46 2.69 -72.36 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.02 Total: 12.77 kcal Atomic # 6 Polarization: -61.91 SS G_CDS: 4.22 Total: -57.69 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 8 Polarization: -94.51 SS G_CDS: -4.58 Total: -99.09 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 82.72 SS G_CDS: -0.29 Total: 82.43 kcal Total: -75.05 2.69 -72.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748407391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.624 kcal (2) G-P(sol) polarization free energy of solvation -75.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds