Wall clock time and date at job start Tue Mar 31 2020 20:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 120.00084 * 2 1 4 4 C 1.38229 * 120.00181 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00008 * 359.97167 * 4 3 2 6 6 S 1.76199 * 119.99768 * 180.02562 * 5 4 3 7 7 O 1.42092 * 104.28123 * 332.70512 * 6 5 4 8 8 O 1.42110 * 104.27754 * 204.84667 * 6 5 4 9 9 C 1.81403 * 104.44973 * 88.78081 * 6 5 4 10 10 C 1.50700 * 110.01309 * 303.38602 * 9 6 5 11 11 O 1.21217 * 120.00421 * 132.71198 * 10 9 6 12 12 O 1.34315 * 120.00152 * 312.71528 * 10 9 6 13 13 C 1.34915 * 117.00332 * 177.87312 * 12 10 9 14 14 H 1.08003 * 119.99948 * 4.96976 * 13 12 10 15 15 C 1.38757 * 120.00373 * 184.97058 * 13 12 10 16 16 N 1.31442 * 119.99849 * 5.16696 * 15 13 12 17 17 Si 1.86800 * 120.00044 * 185.16702 * 15 13 12 18 18 H 1.48505 * 109.47153 * 90.00116 * 17 15 13 19 19 H 1.48503 * 109.47313 * 209.99855 * 17 15 13 20 20 H 1.48497 * 109.47338 * 330.00153 * 17 15 13 21 21 C 1.54258 * 110.07531 * 64.80210 * 9 6 5 22 22 C 1.54888 * 104.19469 * 95.70279 * 21 9 6 23 23 C 1.54884 * 102.75199 * 37.94274 * 22 21 9 24 24 C 1.53872 * 110.03384 * 181.99727 * 9 6 5 25 25 C 1.38232 * 120.00054 * 0.27965 * 5 4 3 26 26 C 1.38230 * 120.00081 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46891 * 90.00311 * 1 2 3 28 28 H 1.09000 * 109.46693 * 209.99990 * 1 2 3 29 29 H 1.08994 * 109.47118 * 330.00029 * 1 2 3 30 30 H 1.08001 * 119.99703 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99712 * 180.02562 * 4 3 2 32 32 H 0.96995 * 120.00084 * 179.97438 * 16 15 13 33 33 H 1.09003 * 110.48927 * 214.37762 * 21 9 6 34 34 H 1.09001 * 110.48994 * 337.02096 * 21 9 6 35 35 H 1.09008 * 110.75140 * 279.62460 * 22 21 9 36 36 H 1.09002 * 110.75853 * 156.25984 * 22 21 9 37 37 H 1.09003 * 110.48906 * 203.38435 * 23 22 21 38 38 H 1.08999 * 110.49207 * 80.73463 * 23 22 21 39 39 H 1.08997 * 110.02989 * 359.94789 * 24 9 6 40 40 H 1.09007 * 110.03219 * 121.37835 * 24 9 6 41 41 H 1.08001 * 120.00117 * 179.72444 * 25 5 4 42 42 H 1.07999 * 120.00378 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0017 6 16 6.0337 0.0002 0.0030 7 8 6.3846 1.2236 -0.6288 8 8 6.3847 -1.2498 -0.5748 9 6 6.4850 0.0384 1.7596 10 6 5.8586 1.2356 2.4271 11 8 5.2792 1.1062 3.4839 12 8 5.9421 2.4460 1.8509 13 6 5.3224 3.4671 2.4782 14 1 4.8587 3.3080 3.4406 15 6 5.2806 4.7217 1.8870 16 7 5.7545 4.8922 0.6729 17 14 4.5508 6.1684 2.8165 18 1 5.6183 6.8451 3.5961 19 1 3.9584 7.1289 1.8512 20 1 3.4958 5.6814 3.7410 21 6 6.0193 -1.2578 2.4543 22 6 7.2701 -2.1710 2.4322 23 6 8.4264 -1.1733 2.6903 24 6 8.0154 0.0922 1.9096 25 6 3.5806 -1.1971 -0.0036 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.7250 5.7691 0.2594 33 1 5.7150 -1.0524 3.4807 34 1 5.2021 -1.7165 1.8977 35 1 7.3823 -2.6490 1.4589 36 1 7.2185 -2.9162 3.2260 37 1 9.3659 -1.5704 2.3058 38 1 8.5109 -0.9542 3.7547 39 1 8.4870 0.0943 0.9269 40 1 8.3051 0.9841 2.4652 41 1 4.1206 -2.1324 -0.0072 42 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750958350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:29 Heat of formation + Delta-G solvation = -125.020193 kcal Electronic energy + Delta-G solvation = -29048.001396 eV Core-core repulsion = 25085.723264 eV Total energy + Delta-G solvation = -3962.278132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.67653 -39.04354 -37.59251 -36.52335 -35.50465 -35.09934 -32.89343 -32.26193 -30.77314 -29.61744 -28.81214 -27.09187 -25.46539 -22.69504 -22.20447 -21.63252 -20.76201 -20.06602 -18.52284 -17.89871 -17.59561 -17.06767 -16.06858 -15.73959 -15.33313 -15.09886 -14.58994 -14.47807 -14.35540 -14.28448 -14.12367 -13.77486 -13.26631 -13.23681 -13.14247 -12.38018 -12.29442 -12.13345 -11.97950 -11.86511 -11.66357 -11.59442 -11.46935 -11.43401 -11.19309 -11.11261 -11.03834 -10.86124 -10.57763 -10.52698 -10.46535 -10.39720 -10.03741 -9.78476 -9.15131 -8.85154 -8.74319 -8.65319 -6.45148 -4.16736 0.37017 1.10578 1.59608 2.95145 3.11659 3.15207 3.19869 3.45141 3.61302 3.72061 4.14200 4.19310 4.33999 4.60724 4.75323 4.87271 4.97005 5.06332 5.09847 5.16106 5.28433 5.36991 5.40653 5.47212 5.52194 5.57652 5.74750 5.76881 5.78700 5.89973 5.94910 6.04278 6.05176 6.16360 6.20394 6.21971 6.41713 6.47316 6.48608 6.61318 6.69533 7.13921 7.30573 7.83383 8.53590 8.98003 9.67266 10.68148 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.006945 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.018697 B = 4030.764913 C = 5884.042692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.037 4.037 3 C -0.140 4.140 4 C 0.006 3.994 5 C -0.663 4.663 6 S 2.499 3.501 7 O -0.894 6.894 8 O -0.942 6.942 9 C -0.524 4.524 10 C 0.408 3.592 11 O -0.531 6.531 12 O -0.192 6.192 13 C -0.388 4.388 14 H 0.098 0.902 15 C 0.048 3.952 16 N -0.838 5.838 17 Si 0.938 3.062 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.266 1.266 21 C -0.091 4.091 22 C -0.133 4.133 23 C -0.119 4.119 24 C -0.089 4.089 25 C -0.023 4.023 26 C -0.152 4.152 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.159 0.841 32 H 0.272 0.728 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 -11.493 -0.571 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.037 4.037 3 C -0.159 4.159 4 C -0.012 4.012 5 C -0.751 4.751 6 S 2.677 3.323 7 O -0.891 6.891 8 O -0.939 6.939 9 C -0.613 4.613 10 C 0.252 3.748 11 O -0.428 6.428 12 O -0.099 6.099 13 C -0.464 4.464 14 H 0.116 0.884 15 C -0.159 4.159 16 N -0.472 5.472 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.191 1.191 21 C -0.129 4.129 22 C -0.170 4.170 23 C -0.157 4.157 24 C -0.128 4.128 25 C -0.042 4.042 26 C -0.171 4.171 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.177 0.823 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.155 0.845 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.255 -11.337 -1.194 11.855 hybrid contribution -0.967 0.881 1.069 1.689 sum -4.221 -10.456 -0.125 11.276 Atomic orbital electron populations 1.20897 0.90980 1.03182 1.02566 1.20226 0.96167 0.93458 0.93882 1.21197 0.94316 0.97824 1.02565 1.21362 0.94884 0.97732 0.87258 1.30460 1.25783 0.99642 1.19178 1.05779 0.74910 0.74972 0.76613 1.93690 1.81514 1.43919 1.69988 1.93507 1.82805 1.44285 1.73298 1.30286 1.05729 1.01266 1.24068 1.21505 0.82403 0.84389 0.86477 1.90527 1.43870 1.85164 1.23195 1.83983 1.62544 1.14001 1.49333 1.21254 1.35600 0.85605 1.03982 0.88442 1.25370 0.96830 0.97933 0.95802 1.70078 1.41020 1.24128 1.12016 0.85764 0.79277 0.79815 0.78928 1.19745 1.20188 1.19070 1.22253 0.97957 0.89065 1.03650 1.22672 0.93831 0.97509 1.03006 1.22367 0.98508 0.94040 1.00769 1.21888 0.87514 1.01394 1.02031 1.20862 0.94710 0.96284 0.92349 1.21014 0.94003 0.97613 1.04440 0.90695 0.91265 0.91025 0.85126 0.82310 0.91765 0.87458 0.90967 0.89893 0.90384 0.90590 0.90681 0.90972 0.88689 0.84531 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.01 36.01 0.36 -0.88 16 2 C -0.04 -0.54 5.88 -104.62 -0.62 -1.15 16 3 C -0.14 -2.41 9.70 -39.59 -0.38 -2.80 16 4 C 0.01 0.13 9.19 -39.59 -0.36 -0.23 16 5 C -0.66 -12.79 4.94 -39.59 -0.20 -12.99 16 6 S 2.50 50.27 3.73 -107.50 -0.40 49.87 16 7 O -0.89 -21.51 16.24 -63.21 -1.03 -22.54 16 8 O -0.94 -18.04 16.70 -57.54 -0.96 -19.01 16 9 C -0.52 -10.11 0.82 -90.66 -0.07 -10.19 16 10 C 0.41 9.78 5.67 36.01 0.20 9.99 16 11 O -0.53 -13.59 14.65 -19.06 -0.28 -13.87 16 12 O -0.19 -5.25 8.21 -25.35 -0.21 -5.45 16 13 C -0.39 -10.90 9.63 30.92 0.30 -10.60 16 14 H 0.10 2.75 6.87 -52.48 -0.36 2.39 16 15 C 0.05 1.29 5.49 -17.53 -0.10 1.19 16 16 N -0.84 -23.68 13.67 55.48 0.76 -22.93 16 17 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C -0.09 -1.46 5.61 -25.08 -0.14 -1.60 16 22 C -0.13 -1.71 6.91 -24.74 -0.17 -1.88 16 23 C -0.12 -1.56 6.83 -25.07 -0.17 -1.73 16 24 C -0.09 -1.51 6.13 -25.61 -0.16 -1.66 16 25 C -0.02 -0.37 8.27 -39.58 -0.33 -0.70 16 26 C -0.15 -2.14 9.70 -39.58 -0.38 -2.52 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.16 3.75 7.16 -52.49 -0.38 3.37 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.11 1.83 6.77 -51.93 -0.35 1.48 16 34 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 35 H 0.08 1.03 7.90 -51.92 -0.41 0.62 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.11 7.59 -51.93 -0.39 0.72 16 40 H 0.09 1.68 7.67 -51.93 -0.40 1.28 16 41 H 0.14 1.86 7.25 -52.49 -0.38 1.48 16 42 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -34.21 359.17 -9.44 -43.64 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.49 Total: 7.22 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: -2.22 Total: -37.76 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.76 Total: -22.93 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -2.47 Total: -60.87 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.40 Total: 49.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.21 -9.44 -43.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750958350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.377 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds