Wall clock time and date at job start Tue Mar 31 2020 20:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 120.00084 * 2 1 4 4 C 1.38229 * 120.00181 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00008 * 359.97167 * 4 3 2 6 6 S 1.76199 * 119.99768 * 180.02562 * 5 4 3 7 7 O 1.42092 * 104.28123 * 332.70512 * 6 5 4 8 8 O 1.42110 * 104.27754 * 204.84667 * 6 5 4 9 9 C 1.81403 * 104.44973 * 88.78081 * 6 5 4 10 10 C 1.50700 * 110.01309 * 303.38602 * 9 6 5 11 11 O 1.21217 * 120.00421 * 132.71198 * 10 9 6 12 12 O 1.34315 * 120.00152 * 312.71528 * 10 9 6 13 13 C 1.34915 * 117.00332 * 177.87312 * 12 10 9 14 14 H 1.08003 * 119.99948 * 4.96976 * 13 12 10 15 15 C 1.38757 * 120.00373 * 184.97058 * 13 12 10 16 16 N 1.31442 * 119.99849 * 5.16696 * 15 13 12 17 17 Si 1.86800 * 120.00044 * 185.16702 * 15 13 12 18 18 H 1.48505 * 109.47153 * 90.00116 * 17 15 13 19 19 H 1.48503 * 109.47313 * 209.99855 * 17 15 13 20 20 H 1.48497 * 109.47338 * 330.00153 * 17 15 13 21 21 C 1.54258 * 110.07531 * 64.80210 * 9 6 5 22 22 C 1.54888 * 104.19469 * 95.70279 * 21 9 6 23 23 C 1.54884 * 102.75199 * 37.94274 * 22 21 9 24 24 C 1.53872 * 110.03384 * 181.99727 * 9 6 5 25 25 C 1.38232 * 120.00054 * 0.27965 * 5 4 3 26 26 C 1.38230 * 120.00081 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46891 * 90.00311 * 1 2 3 28 28 H 1.09000 * 109.46693 * 209.99990 * 1 2 3 29 29 H 1.08994 * 109.47118 * 330.00029 * 1 2 3 30 30 H 1.08001 * 119.99703 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99712 * 180.02562 * 4 3 2 32 32 H 0.96995 * 120.00084 * 179.97438 * 16 15 13 33 33 H 1.09003 * 110.48927 * 214.37762 * 21 9 6 34 34 H 1.09001 * 110.48994 * 337.02096 * 21 9 6 35 35 H 1.09008 * 110.75140 * 279.62460 * 22 21 9 36 36 H 1.09002 * 110.75853 * 156.25984 * 22 21 9 37 37 H 1.09003 * 110.48906 * 203.38435 * 23 22 21 38 38 H 1.08999 * 110.49207 * 80.73463 * 23 22 21 39 39 H 1.08997 * 110.02989 * 359.94789 * 24 9 6 40 40 H 1.09007 * 110.03219 * 121.37835 * 24 9 6 41 41 H 1.08001 * 120.00117 * 179.72444 * 25 5 4 42 42 H 1.07999 * 120.00378 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0017 6 16 6.0337 0.0002 0.0030 7 8 6.3846 1.2236 -0.6288 8 8 6.3847 -1.2498 -0.5748 9 6 6.4850 0.0384 1.7596 10 6 5.8586 1.2356 2.4271 11 8 5.2792 1.1062 3.4839 12 8 5.9421 2.4460 1.8509 13 6 5.3224 3.4671 2.4782 14 1 4.8587 3.3080 3.4406 15 6 5.2806 4.7217 1.8870 16 7 5.7545 4.8922 0.6729 17 14 4.5508 6.1684 2.8165 18 1 5.6183 6.8451 3.5961 19 1 3.9584 7.1289 1.8512 20 1 3.4958 5.6814 3.7410 21 6 6.0193 -1.2578 2.4543 22 6 7.2701 -2.1710 2.4322 23 6 8.4264 -1.1733 2.6903 24 6 8.0154 0.0922 1.9096 25 6 3.5806 -1.1971 -0.0036 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.7250 5.7691 0.2594 33 1 5.7150 -1.0524 3.4807 34 1 5.2021 -1.7165 1.8977 35 1 7.3823 -2.6490 1.4589 36 1 7.2185 -2.9162 3.2260 37 1 9.3659 -1.5704 2.3058 38 1 8.5109 -0.9542 3.7547 39 1 8.4870 0.0943 0.9269 40 1 8.3051 0.9841 2.4652 41 1 4.1206 -2.1324 -0.0072 42 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750958350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:28 Heat of formation + Delta-G solvation = -147.038028 kcal Electronic energy + Delta-G solvation = -29048.956161 eV Core-core repulsion = 25085.723264 eV Total energy + Delta-G solvation = -3963.232897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.50684 -40.32764 -39.11543 -38.15869 -37.21332 -37.03306 -34.35393 -34.06719 -32.07668 -31.02396 -30.05889 -28.17018 -27.50650 -24.09374 -23.74105 -22.93388 -21.98210 -21.60698 -20.12453 -19.90928 -19.28718 -18.62101 -17.65007 -17.41719 -16.83302 -16.36905 -16.34753 -16.24504 -15.91786 -15.76618 -15.45948 -14.90852 -14.76323 -14.55938 -14.49850 -13.97140 -13.71194 -13.34253 -13.32769 -13.27909 -13.16049 -13.13345 -13.09322 -13.02483 -12.75354 -12.43028 -12.26411 -12.19623 -12.14465 -12.09969 -12.07304 -11.83520 -11.64388 -11.37117 -11.06157 -10.71780 -10.10345 -10.06073 -8.51470 -6.35175 -1.19012 -0.23265 0.28152 1.16541 1.30116 1.45570 1.49332 1.73612 1.91805 2.28238 2.38693 2.71978 2.83990 2.97505 3.22580 3.35360 3.74490 3.83605 3.88667 3.93356 4.06739 4.15411 4.21715 4.28502 4.34195 4.48907 4.64208 4.64657 4.69467 4.70816 4.79720 4.84277 4.96231 4.99584 5.05288 5.06792 5.10675 5.11177 5.15951 5.23218 5.39282 5.45006 5.77271 5.87479 6.49874 6.88169 7.63192 8.65150 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.006945 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.018697 B = 4030.764913 C = 5884.042692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 C -0.157 4.157 4 C -0.030 4.030 5 C -0.682 4.682 6 S 2.503 3.497 7 O -0.949 6.949 8 O -0.932 6.932 9 C -0.521 4.521 10 C 0.413 3.587 11 O -0.552 6.552 12 O -0.218 6.218 13 C -0.421 4.421 14 H 0.086 0.914 15 C 0.003 3.997 16 N -0.882 5.882 17 Si 1.010 2.990 18 H -0.260 1.260 19 H -0.261 1.261 20 H -0.261 1.261 21 C -0.095 4.095 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.104 4.104 25 C -0.027 4.027 26 C -0.141 4.141 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.279 0.721 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.165 0.835 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 -14.506 0.160 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.176 4.176 4 C -0.049 4.049 5 C -0.772 4.772 6 S 2.685 3.315 7 O -0.946 6.946 8 O -0.930 6.930 9 C -0.612 4.612 10 C 0.259 3.741 11 O -0.449 6.449 12 O -0.126 6.126 13 C -0.497 4.497 14 H 0.104 0.896 15 C -0.200 4.200 16 N -0.517 5.517 17 Si 0.828 3.172 18 H -0.185 1.185 19 H -0.185 1.185 20 H -0.185 1.185 21 C -0.133 4.133 22 C -0.162 4.162 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.046 4.046 26 C -0.160 4.160 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.154 0.846 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.183 0.817 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.926 -14.360 -0.474 15.189 hybrid contribution -0.514 1.680 0.835 1.945 sum -5.440 -12.680 0.361 13.802 Atomic orbital electron populations 1.21018 0.87418 1.04692 1.04267 1.20746 0.98619 0.92309 0.91136 1.21398 0.93126 0.99882 1.03190 1.21063 0.96415 0.96511 0.90932 1.30212 1.24750 1.00643 1.21600 1.05283 0.75462 0.74069 0.76639 1.93629 1.82926 1.46269 1.71794 1.93493 1.83164 1.43035 1.73270 1.30451 1.07234 1.00406 1.23080 1.22343 0.81071 0.84759 0.85968 1.90486 1.44533 1.85704 1.24169 1.84022 1.63314 1.15199 1.50021 1.21429 1.37179 0.86878 1.04191 0.89624 1.26517 0.96589 1.00330 0.96538 1.70198 1.42522 1.25237 1.13758 0.84748 0.78757 0.75828 0.77840 1.18483 1.18490 1.18457 1.22442 1.00338 0.87945 1.02614 1.22753 0.91248 0.97285 1.04937 1.22449 1.00173 0.91892 1.00603 1.22136 0.85865 1.03088 1.03153 1.21316 0.96069 0.95795 0.91422 1.21612 0.93264 0.99380 1.01718 0.88633 0.88568 0.90778 0.84570 0.87242 0.91192 0.88559 0.89409 0.88906 0.86900 0.87329 0.90109 0.90088 0.90633 0.81729 0.80550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 10.01 71.24 0.71 -1.27 16 2 C -0.03 -0.74 5.88 -19.87 -0.12 -0.86 16 3 C -0.16 -5.57 9.70 22.27 0.22 -5.35 16 4 C -0.03 -1.32 9.19 22.27 0.20 -1.11 16 5 C -0.68 -27.06 4.94 22.27 0.11 -26.95 16 6 S 2.50 104.58 3.73 -56.49 -0.21 104.37 16 7 O -0.95 -49.56 16.24 -122.23 -1.98 -51.55 16 8 O -0.93 -35.20 16.70 -127.65 -2.13 -37.33 16 9 C -0.52 -20.66 0.82 -10.82 -0.01 -20.67 16 10 C 0.41 21.00 5.67 71.24 0.40 21.41 16 11 O -0.55 -29.62 14.65 20.75 0.30 -29.32 16 12 O -0.22 -12.88 8.21 19.32 0.16 -12.72 16 13 C -0.42 -25.31 9.63 67.94 0.65 -24.66 16 14 H 0.09 5.17 6.87 -2.91 -0.02 5.15 16 15 C 0.00 0.17 5.49 84.88 0.47 0.64 16 16 N -0.88 -53.06 13.67 21.63 0.30 -52.76 16 17 Si 1.01 43.26 29.55 68.60 2.03 45.29 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 21 C -0.10 -2.93 5.61 31.67 0.18 -2.75 16 22 C -0.13 -2.80 6.91 31.88 0.22 -2.58 16 23 C -0.11 -2.72 6.83 31.67 0.22 -2.50 16 24 C -0.10 -3.55 6.13 31.32 0.19 -3.36 16 25 C -0.03 -0.82 8.27 22.27 0.18 -0.64 16 26 C -0.14 -3.46 9.70 22.27 0.22 -3.25 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 1.17 8.09 -2.39 -0.02 1.15 16 29 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 30 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 31 H 0.11 5.85 7.16 -2.91 -0.02 5.83 16 32 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.10 3.21 6.77 -2.39 -0.02 3.19 16 34 H 0.09 2.38 5.95 -2.39 -0.01 2.36 16 35 H 0.09 1.94 7.90 -2.38 -0.02 1.92 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 2.58 7.59 -2.39 -0.02 2.56 16 40 H 0.07 2.84 7.67 -2.38 -0.02 2.82 16 41 H 0.17 3.92 7.25 -2.91 -0.02 3.90 16 42 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -82.56 359.17 3.35 -79.21 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 1.04 Total: 28.70 kcal Atomic # 6 Polarization: -77.74 SS G_CDS: 3.85 Total: -73.90 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.30 Total: -52.76 kcal Atomic # 8 Polarization: -127.26 SS G_CDS: -3.65 Total: -130.92 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 104.58 SS G_CDS: -0.21 Total: 104.37 kcal Total: -82.56 3.35 -79.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750958350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.829 kcal (2) G-P(sol) polarization free energy of solvation -82.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds