Wall clock time and date at job start Tue Mar 31 2020 20:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99989 * 2 1 4 4 H 1.48503 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00072 * 3 2 1 6 6 H 1.48498 * 109.47036 * 60.00450 * 3 2 1 7 7 C 1.39938 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99874 * 197.88987 * 7 2 1 9 9 C 1.41437 * 120.00076 * 17.89145 * 7 2 1 10 10 C 1.40790 * 120.17459 * 204.43642 * 9 7 2 11 11 C 1.37720 * 120.05225 * 180.02562 * 10 9 7 12 12 C 1.38354 * 120.41653 * 359.74284 * 11 10 9 13 13 C 1.39926 * 120.35421 * 0.51878 * 12 11 10 14 14 C 1.47770 * 120.03267 * 179.76220 * 13 12 11 15 15 O 1.21468 * 119.99937 * 179.72187 * 14 13 12 16 16 O 1.34702 * 119.99676 * 359.72336 * 14 13 12 17 17 C 1.45206 * 116.99848 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46935 * 179.97438 * 17 16 14 19 19 C 1.52571 * 109.19527 * 63.77268 * 18 17 16 20 20 C 1.53042 * 109.99229 * 190.16442 * 19 18 17 21 21 S 1.81673 * 109.07641 * 296.49643 * 20 19 18 22 22 O 1.42102 * 108.66105 * 168.57769 * 21 20 19 23 23 O 1.42101 * 108.66316 * 299.82570 * 21 20 19 24 24 C 1.81668 * 101.30437 * 54.25103 * 21 20 19 25 25 C 1.52589 * 109.24010 * 184.99947 * 18 17 16 26 26 C 1.39095 * 119.93805 * 359.48087 * 13 12 11 27 27 H 0.97006 * 120.00094 * 359.97438 * 1 2 3 28 28 H 1.08008 * 119.97351 * 0.02562 * 10 9 7 29 29 H 1.07993 * 119.78793 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.82388 * 180.28009 * 12 11 10 31 31 H 1.09003 * 109.46879 * 59.99953 * 17 16 14 32 32 H 1.08999 * 109.47005 * 300.00219 * 17 16 14 33 33 H 1.09001 * 109.23852 * 304.43969 * 18 17 16 34 34 H 1.08999 * 109.30190 * 70.05219 * 19 18 17 35 35 H 1.09002 * 109.46143 * 310.37061 * 19 18 17 36 36 H 1.08995 * 109.54913 * 176.59541 * 20 19 18 37 37 H 1.08993 * 109.55028 * 56.40152 * 20 19 18 38 38 H 1.08997 * 109.55178 * 65.56138 * 24 21 20 39 39 H 1.09008 * 109.54326 * 185.74926 * 24 21 20 40 40 H 1.09004 * 109.38564 * 49.59518 * 25 18 17 41 41 H 1.08996 * 109.30174 * 289.86156 * 25 18 17 42 42 H 1.07995 * 120.20312 * 180.23295 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0487 -1.2347 0.2868 9 6 1.3519 -2.4070 -0.3774 10 6 1.8262 -3.6501 0.0832 11 6 1.1859 -4.8122 -0.2858 12 6 0.0717 -4.7684 -1.1049 13 6 -0.4111 -3.5428 -1.5770 14 6 -1.5984 -3.5047 -2.4558 15 8 -2.0201 -2.4401 -2.8611 16 8 -2.2132 -4.6506 -2.8073 17 6 -3.3740 -4.5374 -3.6723 18 6 -3.9326 -5.9322 -3.9612 19 6 -4.4228 -6.5560 -2.6581 20 6 -4.7499 -8.0350 -2.8765 21 16 -6.1196 -8.1714 -4.0621 22 8 -6.2419 -9.5297 -4.4614 23 8 -7.2518 -7.4989 -3.5282 24 6 -5.4757 -7.2096 -5.4624 25 6 -5.0735 -5.8182 -4.9681 26 6 0.2242 -2.3600 -1.2136 27 1 -0.4850 0.8401 0.0004 28 1 2.6929 -3.6923 0.7263 29 1 1.5530 -5.7633 0.0703 30 1 -0.4257 -5.6853 -1.3846 31 1 -3.0839 -4.0613 -4.6090 32 1 -4.1369 -3.9348 -3.1796 33 1 -3.1432 -6.5552 -4.3818 34 1 -5.3185 -6.0331 -2.3228 35 1 -3.6470 -6.4656 -1.8977 36 1 -5.0413 -8.4880 -1.9289 37 1 -3.8731 -8.5480 -3.2716 38 1 -4.6049 -7.7137 -5.8815 39 1 -6.2471 -7.1177 -6.2271 40 1 -4.7496 -5.2131 -5.8149 41 1 -5.9297 -5.3426 -4.4900 42 1 -0.1470 -1.4115 -1.5724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753591445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:55 Heat of formation + Delta-G solvation = -153.447120 kcal Electronic energy + Delta-G solvation = -26430.087443 eV Core-core repulsion = 22466.576628 eV Total energy + Delta-G solvation = -3963.510816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.00136 -38.28309 -37.39376 -37.08264 -36.33037 -35.58860 -33.82165 -32.24353 -30.70336 -29.77887 -29.53787 -25.55034 -24.84606 -24.08212 -22.79052 -21.06794 -20.81948 -19.88081 -19.17415 -17.92305 -17.24997 -16.71997 -16.62165 -16.23051 -16.06478 -15.79777 -15.20225 -14.82729 -14.70994 -14.43735 -14.25584 -13.61639 -13.57159 -13.35128 -13.21952 -12.76395 -12.64830 -12.44875 -12.34006 -12.31479 -12.19147 -11.85581 -11.76633 -11.47787 -11.27456 -11.20487 -11.14441 -10.94516 -10.83364 -10.57456 -10.40615 -10.28065 -10.26340 -9.80039 -9.56775 -9.31029 -7.82433 -7.63384 -6.89956 -4.50683 -0.31489 1.89356 2.31823 2.70626 2.99059 3.02501 3.05968 3.08339 3.31511 3.51232 3.58543 3.84866 4.09600 4.13712 4.26430 4.33032 4.50627 4.55862 4.70020 4.86073 4.98837 5.13182 5.24785 5.32861 5.38795 5.45553 5.47062 5.51880 5.61773 5.86772 5.89267 6.05794 6.31213 6.55444 6.83312 6.87048 6.90548 7.09853 7.23245 7.60162 7.67409 7.83668 8.02898 8.37309 8.45423 8.69728 8.71850 10.05295 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.025690 B = 0.002251 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.665454 B =12435.144352 C =13092.617405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.195 4.195 13 C -0.115 4.115 14 C 0.513 3.487 15 O -0.517 6.517 16 O -0.355 6.355 17 C 0.071 3.929 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.598 4.598 21 S 2.413 3.587 22 O -0.947 6.947 23 O -0.937 6.937 24 C -0.600 4.600 25 C -0.106 4.106 26 C -0.090 4.090 27 H 0.285 0.715 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -11.330 -8.435 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.121 4.121 12 C -0.215 4.215 13 C -0.116 4.116 14 C 0.360 3.640 15 O -0.406 6.406 16 O -0.273 6.273 17 C -0.004 4.004 18 C -0.125 4.125 19 C -0.148 4.148 20 C -0.727 4.727 21 S 2.595 3.405 22 O -0.944 6.944 23 O -0.934 6.934 24 C -0.730 4.730 25 C -0.145 4.145 26 C -0.109 4.109 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.629 -11.307 -8.478 17.101 hybrid contribution 0.973 1.129 -0.162 1.499 sum -8.657 -10.178 -8.639 15.911 Atomic orbital electron populations 1.69782 1.07630 1.29793 1.33790 1.25976 0.94787 1.01664 0.92206 0.86214 0.80900 0.80670 0.78734 1.18280 1.19544 1.19854 1.19612 0.98320 0.90929 1.39874 0.89863 1.17551 0.91126 0.92632 0.89423 1.21193 1.03229 0.92702 1.05003 1.20508 0.96098 0.96914 0.98630 1.20530 1.00221 0.95229 1.05526 1.18824 0.94931 0.95915 1.01980 1.21879 0.83023 0.80827 0.78297 1.90772 1.65119 1.31146 1.53570 1.86561 1.41805 1.36276 1.62662 1.22834 0.86981 0.96119 0.94427 1.21350 0.98300 0.97236 0.95664 1.21378 1.04376 0.90054 0.99000 1.30196 1.19435 1.05643 1.17460 1.08188 0.77792 0.75725 0.78814 1.93594 1.86198 1.32563 1.82060 1.93595 1.45936 1.76143 1.77728 1.30186 1.13346 1.10152 1.19274 1.21253 0.99042 0.94133 1.00031 1.21662 0.96560 0.96036 0.96692 0.90412 0.88330 0.88553 0.87939 0.90924 0.90855 0.88647 0.89572 0.87870 0.84552 0.84687 0.84681 0.84592 0.88870 0.89162 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.05 10.96 55.55 0.61 -19.44 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 18.12 29.60 -169.99 -5.03 13.09 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.60 9.05 -37.73 -0.34 -11.94 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.10 2.42 5.57 -106.87 -0.60 1.82 16 10 C -0.20 -4.59 9.78 -38.81 -0.38 -4.97 16 11 C -0.10 -2.13 10.01 -39.73 -0.40 -2.52 16 12 C -0.20 -4.06 9.62 -38.91 -0.37 -4.43 16 13 C -0.12 -2.64 5.87 -105.05 -0.62 -3.26 16 14 C 0.51 10.74 7.90 34.63 0.27 11.02 16 15 O -0.52 -11.94 16.12 -19.24 -0.31 -12.25 16 16 O -0.36 -5.84 8.76 -40.50 -0.35 -6.20 16 17 C 0.07 0.87 4.82 37.16 0.18 1.05 16 18 C -0.11 -0.89 2.19 -91.05 -0.20 -1.09 16 19 C -0.11 -0.92 5.01 -26.93 -0.13 -1.06 16 20 C -0.60 -3.87 6.34 37.18 0.24 -3.63 16 21 S 2.41 18.67 5.30 -107.50 -0.57 18.10 16 22 O -0.95 -10.57 18.10 -57.82 -1.05 -11.62 16 23 O -0.94 -10.59 17.97 -57.82 -1.04 -11.63 16 24 C -0.60 -3.12 6.35 37.17 0.24 -2.89 16 25 C -0.11 -0.68 5.03 -26.92 -0.14 -0.81 16 26 C -0.09 -2.30 8.24 -38.42 -0.32 -2.62 16 27 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 28 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 29 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.10 1.86 7.59 -52.49 -0.40 1.46 16 31 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 35 H 0.10 1.01 7.49 -51.93 -0.39 0.62 16 36 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.14 0.53 8.14 -51.92 -0.42 0.10 16 40 H 0.09 0.51 8.06 -51.93 -0.42 0.09 16 41 H 0.09 0.57 8.02 -51.93 -0.42 0.15 16 42 H 0.14 3.71 5.74 -52.49 -0.30 3.41 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -33.40 363.17 -10.61 -44.02 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.69 Total: 4.10 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -2.66 Total: -23.64 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.61 Total: -19.44 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -2.75 Total: -41.70 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 18.67 SS G_CDS: -0.57 Total: 18.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.40 -10.61 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753591445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.430 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds