Wall clock time and date at job start Tue Mar 31 2020 20:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99989 * 2 1 4 4 H 1.48503 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00072 * 3 2 1 6 6 H 1.48498 * 109.47036 * 60.00450 * 3 2 1 7 7 C 1.39938 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99874 * 197.88987 * 7 2 1 9 9 C 1.41437 * 120.00076 * 17.89145 * 7 2 1 10 10 C 1.40790 * 120.17459 * 204.43642 * 9 7 2 11 11 C 1.37720 * 120.05225 * 180.02562 * 10 9 7 12 12 C 1.38354 * 120.41653 * 359.74284 * 11 10 9 13 13 C 1.39926 * 120.35421 * 0.51878 * 12 11 10 14 14 C 1.47770 * 120.03267 * 179.76220 * 13 12 11 15 15 O 1.21468 * 119.99937 * 179.72187 * 14 13 12 16 16 O 1.34702 * 119.99676 * 359.72336 * 14 13 12 17 17 C 1.45206 * 116.99848 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46935 * 179.97438 * 17 16 14 19 19 C 1.52571 * 109.19527 * 63.77268 * 18 17 16 20 20 C 1.53042 * 109.99229 * 190.16442 * 19 18 17 21 21 S 1.81673 * 109.07641 * 296.49643 * 20 19 18 22 22 O 1.42102 * 108.66105 * 168.57769 * 21 20 19 23 23 O 1.42101 * 108.66316 * 299.82570 * 21 20 19 24 24 C 1.81668 * 101.30437 * 54.25103 * 21 20 19 25 25 C 1.52589 * 109.24010 * 184.99947 * 18 17 16 26 26 C 1.39095 * 119.93805 * 359.48087 * 13 12 11 27 27 H 0.97006 * 120.00094 * 359.97438 * 1 2 3 28 28 H 1.08008 * 119.97351 * 0.02562 * 10 9 7 29 29 H 1.07993 * 119.78793 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.82388 * 180.28009 * 12 11 10 31 31 H 1.09003 * 109.46879 * 59.99953 * 17 16 14 32 32 H 1.08999 * 109.47005 * 300.00219 * 17 16 14 33 33 H 1.09001 * 109.23852 * 304.43969 * 18 17 16 34 34 H 1.08999 * 109.30190 * 70.05219 * 19 18 17 35 35 H 1.09002 * 109.46143 * 310.37061 * 19 18 17 36 36 H 1.08995 * 109.54913 * 176.59541 * 20 19 18 37 37 H 1.08993 * 109.55028 * 56.40152 * 20 19 18 38 38 H 1.08997 * 109.55178 * 65.56138 * 24 21 20 39 39 H 1.09008 * 109.54326 * 185.74926 * 24 21 20 40 40 H 1.09004 * 109.38564 * 49.59518 * 25 18 17 41 41 H 1.08996 * 109.30174 * 289.86156 * 25 18 17 42 42 H 1.07995 * 120.20312 * 180.23295 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0487 -1.2347 0.2868 9 6 1.3519 -2.4070 -0.3774 10 6 1.8262 -3.6501 0.0832 11 6 1.1859 -4.8122 -0.2858 12 6 0.0717 -4.7684 -1.1049 13 6 -0.4111 -3.5428 -1.5770 14 6 -1.5984 -3.5047 -2.4558 15 8 -2.0201 -2.4401 -2.8611 16 8 -2.2132 -4.6506 -2.8073 17 6 -3.3740 -4.5374 -3.6723 18 6 -3.9326 -5.9322 -3.9612 19 6 -4.4228 -6.5560 -2.6581 20 6 -4.7499 -8.0350 -2.8765 21 16 -6.1196 -8.1714 -4.0621 22 8 -6.2419 -9.5297 -4.4614 23 8 -7.2518 -7.4989 -3.5282 24 6 -5.4757 -7.2096 -5.4624 25 6 -5.0735 -5.8182 -4.9681 26 6 0.2242 -2.3600 -1.2136 27 1 -0.4850 0.8401 0.0004 28 1 2.6929 -3.6923 0.7263 29 1 1.5530 -5.7633 0.0703 30 1 -0.4257 -5.6853 -1.3846 31 1 -3.0839 -4.0613 -4.6090 32 1 -4.1369 -3.9348 -3.1796 33 1 -3.1432 -6.5552 -4.3818 34 1 -5.3185 -6.0331 -2.3228 35 1 -3.6470 -6.4656 -1.8977 36 1 -5.0413 -8.4880 -1.9289 37 1 -3.8731 -8.5480 -3.2716 38 1 -4.6049 -7.7137 -5.8815 39 1 -6.2471 -7.1177 -6.2271 40 1 -4.7496 -5.2131 -5.8149 41 1 -5.9297 -5.3426 -4.4900 42 1 -0.1470 -1.4115 -1.5724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753591445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:55 Heat of formation + Delta-G solvation = -174.469217 kcal Electronic energy + Delta-G solvation = -26430.999030 eV Core-core repulsion = 22466.576628 eV Total energy + Delta-G solvation = -3964.422402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47817 -39.40580 -38.75651 -37.92953 -37.06172 -36.94827 -35.61199 -32.77828 -32.31713 -31.36716 -30.67750 -27.31422 -25.96713 -24.69691 -24.14808 -22.83791 -21.57572 -21.41527 -19.82009 -19.59929 -18.14476 -17.95260 -17.73308 -17.38822 -17.23543 -16.74128 -16.61195 -16.46490 -15.60069 -15.44154 -15.20554 -14.97028 -14.79835 -14.38057 -14.37025 -14.05975 -13.81261 -13.50202 -13.44207 -13.20497 -13.06271 -12.98889 -12.81574 -12.76909 -12.58725 -12.50281 -12.29404 -12.20534 -12.01756 -11.91664 -11.60252 -11.53232 -11.49027 -11.24354 -11.09767 -10.90638 -9.60667 -9.43486 -8.69227 -6.39663 -0.89327 0.14970 0.97048 1.37822 1.45117 1.53583 1.67212 1.77998 1.82036 2.18777 2.72294 2.74818 2.96000 3.49406 3.54113 3.58913 3.63825 3.74359 4.02482 4.07487 4.13056 4.26663 4.32262 4.43788 4.45610 4.52801 4.64845 4.74082 4.77080 4.87530 4.91265 4.97257 5.05800 5.14075 5.19369 5.20457 5.28653 5.36156 5.46209 5.82879 5.90396 6.02035 6.24163 6.53780 6.83228 6.87721 6.89888 8.28294 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.025690 B = 0.002251 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.665454 B =12435.144352 C =13092.617405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.494 4.494 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.205 4.205 11 C -0.100 4.100 12 C -0.177 4.177 13 C -0.129 4.129 14 C 0.517 3.483 15 O -0.548 6.548 16 O -0.343 6.343 17 C 0.060 3.940 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.587 4.587 21 S 2.414 3.586 22 O -0.986 6.986 23 O -0.982 6.982 24 C -0.580 4.580 25 C -0.109 4.109 26 C -0.125 4.125 27 H 0.287 0.713 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 -13.259 -9.423 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.523 4.523 8 H 0.104 0.896 9 C 0.062 3.938 10 C -0.224 4.224 11 C -0.118 4.118 12 C -0.197 4.197 13 C -0.130 4.130 14 C 0.364 3.636 15 O -0.440 6.440 16 O -0.260 6.260 17 C -0.014 4.014 18 C -0.118 4.118 19 C -0.155 4.155 20 C -0.718 4.718 21 S 2.601 3.399 22 O -0.983 6.983 23 O -0.979 6.979 24 C -0.712 4.712 25 C -0.147 4.147 26 C -0.145 4.145 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.162 0.838 37 H 0.179 0.821 38 H 0.183 0.817 39 H 0.173 0.827 40 H 0.128 0.872 41 H 0.106 0.894 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.907 -13.298 -9.450 18.587 hybrid contribution 0.695 1.546 0.096 1.698 sum -8.212 -11.752 -9.354 17.119 Atomic orbital electron populations 1.69870 1.09212 1.30669 1.35400 1.26837 0.95412 1.04935 0.91289 0.85152 0.79700 0.76120 0.78754 1.17451 1.19501 1.19010 1.19877 0.98679 0.92028 1.41714 0.89590 1.17905 0.91740 0.94039 0.90098 1.21506 1.03599 0.92630 1.04696 1.20970 0.95334 0.97940 0.97539 1.20974 0.99608 0.95464 1.03622 1.19099 0.95591 0.96034 1.02282 1.21610 0.82722 0.81435 0.77794 1.90753 1.65944 1.32593 1.54690 1.86513 1.42838 1.33647 1.62979 1.23288 0.85268 0.99132 0.93708 1.21404 0.99462 0.94765 0.96212 1.21398 1.03857 0.91374 0.98828 1.30095 1.19494 1.04581 1.17620 1.07868 0.77658 0.74851 0.79474 1.93545 1.86994 1.34916 1.82815 1.93539 1.48766 1.76575 1.79015 1.30027 1.14936 1.08566 1.17682 1.21297 0.98216 0.95137 1.00096 1.21470 0.98236 0.96008 0.98805 0.90190 0.86907 0.84169 0.84456 0.90307 0.91459 0.86396 0.90019 0.89061 0.83781 0.82100 0.81733 0.82707 0.87182 0.89435 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.32 10.96 21.82 0.24 -44.08 16 2 C 0.03 1.52 5.14 85.25 0.44 1.96 16 3 Si 0.98 38.14 29.60 68.60 2.03 40.17 16 4 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.49 -25.85 9.05 23.47 0.21 -25.63 16 8 H 0.09 4.24 7.91 -2.91 -0.02 4.22 16 9 C 0.06 3.36 5.57 -21.32 -0.12 3.24 16 10 C -0.20 -9.15 9.78 22.77 0.22 -8.92 16 11 C -0.10 -3.82 10.01 22.17 0.22 -3.60 16 12 C -0.18 -6.91 9.62 22.71 0.22 -6.69 16 13 C -0.13 -5.91 5.87 -20.14 -0.12 -6.03 16 14 C 0.52 21.66 7.90 70.34 0.56 22.22 16 15 O -0.55 -26.06 16.12 19.94 0.32 -25.74 16 16 O -0.34 -10.71 8.76 -56.12 -0.49 -11.20 16 17 C 0.06 1.36 4.82 71.98 0.35 1.71 16 18 C -0.10 -1.36 2.19 -11.07 -0.02 -1.38 16 19 C -0.12 -1.70 5.01 30.47 0.15 -1.54 16 20 C -0.59 -6.07 6.34 72.00 0.46 -5.61 16 21 S 2.41 33.34 5.30 -56.49 -0.30 33.04 16 22 O -0.99 -20.80 18.10 -127.39 -2.31 -23.10 16 23 O -0.98 -21.88 17.97 -127.39 -2.29 -24.17 16 24 C -0.58 -3.92 6.35 71.99 0.46 -3.47 16 25 C -0.11 -1.05 5.03 30.47 0.15 -0.90 16 26 C -0.13 -6.67 8.24 23.02 0.19 -6.48 16 27 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 28 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 29 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.14 4.37 7.59 -2.91 -0.02 4.35 16 31 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.12 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.08 1.25 8.03 -2.39 -0.02 1.23 16 35 H 0.09 1.58 7.49 -2.39 -0.02 1.57 16 36 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.15 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.11 0.79 8.06 -2.39 -0.02 0.77 16 41 H 0.09 0.93 8.02 -2.39 -0.02 0.91 16 42 H 0.10 6.14 5.74 -2.91 -0.02 6.12 16 Total: -1.00 -76.57 363.17 1.60 -74.97 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.03 Total: 21.22 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 3.36 Total: -41.11 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.24 Total: -44.08 kcal Atomic # 8 Polarization: -79.44 SS G_CDS: -4.76 Total: -84.20 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 16 Polarization: 33.34 SS G_CDS: -0.30 Total: 33.04 kcal Total: -76.57 1.60 -74.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753591445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.502 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds