Wall clock time and date at job start Tue Mar 31 2020 21:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47364 * 2 1 4 4 C 1.34224 * 117.00412 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99962 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00241 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47139 * 180.02562 * 6 4 3 8 8 O 1.20761 * 120.00087 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00168 * 180.02562 * 7 6 4 10 10 S 1.81396 * 109.47484 * 179.97438 * 9 7 6 11 11 C 1.81401 * 103.00206 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.46965 * 179.97438 * 11 10 9 13 13 C 1.38299 * 119.93247 * 90.00290 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09001 * 109.47037 * 59.99758 * 1 2 3 28 28 H 1.09004 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46981 * 299.99515 * 1 2 3 30 30 H 1.09000 * 109.46822 * 240.00034 * 2 1 3 31 31 H 1.09001 * 109.47037 * 120.00242 * 2 1 3 32 32 H 1.09000 * 109.47580 * 60.00329 * 6 4 3 33 33 H 1.08999 * 109.47368 * 299.99766 * 6 4 3 34 34 H 1.09001 * 109.47059 * 59.99481 * 9 7 6 35 35 H 1.09000 * 109.46752 * 299.99825 * 9 7 6 36 36 H 1.08998 * 109.46561 * 60.00425 * 11 10 9 37 37 H 1.08996 * 109.47353 * 300.00072 * 11 10 9 38 38 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9373 0.0000 7 6 5.4256 2.8584 -0.0014 8 8 5.9739 1.7825 -0.0022 9 6 6.2465 4.1223 -0.0006 10 16 8.0101 3.6980 -0.0019 11 6 8.8204 5.3210 -0.0015 12 6 10.3159 5.1358 -0.0018 13 6 11.0005 5.0515 -1.2005 14 6 12.3711 4.8823 -1.2043 15 6 13.0619 4.7963 -0.0025 16 8 14.4092 4.6305 -0.0029 17 6 15.0307 4.6718 -1.1987 18 1 14.4507 4.7491 -2.1063 19 6 16.4147 4.6149 -1.2630 20 7 17.1213 4.5211 -0.1573 21 14 17.2758 4.6728 -2.9196 22 1 16.9364 5.9431 -3.6099 23 1 18.7450 4.5974 -2.7169 24 1 16.8305 3.5244 -3.7493 25 6 12.3709 4.8750 1.1996 26 6 11.0009 5.0499 1.1965 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5853 3.4690 0.8905 33 1 3.5844 3.4700 -0.8895 34 1 6.0142 4.7059 0.8903 35 1 6.0127 4.7079 -0.8897 36 1 8.5235 5.8750 0.8890 37 1 8.5224 5.8761 -0.8909 38 1 10.4628 5.1188 -2.1347 39 1 12.9051 4.8169 -2.1406 40 1 18.0894 4.4809 -0.2024 41 1 12.9047 4.8040 2.1357 42 1 10.4635 5.1157 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758158063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:51 Heat of formation + Delta-G solvation = -123.187201 kcal Electronic energy + Delta-G solvation = -24462.282064 eV Core-core repulsion = 20500.083416 eV Total energy + Delta-G solvation = -3962.198647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08746 -39.38393 -39.06521 -36.82139 -36.72514 -32.71020 -32.49698 -31.79651 -31.14473 -30.20426 -29.53906 -26.28671 -24.96471 -24.02997 -22.06609 -22.01184 -20.73837 -19.91010 -18.24406 -18.02698 -17.27401 -17.06843 -16.84158 -16.11954 -16.02779 -15.94359 -14.91251 -14.73097 -14.57919 -14.54622 -14.36410 -13.72254 -13.69577 -13.50673 -13.41879 -13.31010 -13.08797 -12.86720 -12.73297 -12.51248 -12.23783 -12.09898 -12.05569 -11.64971 -11.25353 -10.97506 -10.95383 -10.91651 -10.76426 -10.67951 -10.46529 -9.94900 -9.83304 -9.37950 -8.84292 -8.22653 -7.57976 -7.19920 -6.48729 -4.06732 1.27661 1.59500 1.85358 2.10318 2.20243 2.30813 2.79754 3.12431 3.14133 3.16129 3.52427 3.94441 4.09175 4.44992 4.51095 4.53806 4.56665 4.62556 4.77501 4.80981 4.82489 4.98673 5.06453 5.10329 5.15081 5.24185 5.26632 5.28923 5.48055 5.64526 5.69704 5.80756 6.03358 6.17816 6.36948 6.64564 6.85710 7.00842 7.11286 7.19084 7.31073 7.39838 7.41215 7.76594 7.96084 8.96425 9.65146 10.68761 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.001580 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.959087 B =17718.388430 C =18091.104839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.454 3.546 5 O -0.468 6.468 6 C -0.158 4.158 7 C 0.359 3.641 8 O -0.381 6.381 9 C -0.160 4.160 10 S -0.208 6.208 11 C -0.027 4.027 12 C -0.182 4.182 13 C -0.048 4.048 14 C -0.235 4.235 15 C 0.161 3.839 16 O -0.173 6.173 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.194 4.194 26 C -0.052 4.052 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.272 0.728 41 H 0.119 0.881 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.458 0.436 -0.234 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.281 6.281 4 C 0.294 3.706 5 O -0.352 6.352 6 C -0.197 4.197 7 C 0.227 3.773 8 O -0.248 6.248 9 C -0.308 4.308 10 S 0.022 5.978 11 C -0.174 4.174 12 C -0.185 4.185 13 C -0.068 4.068 14 C -0.255 4.255 15 C 0.105 3.895 16 O -0.075 6.075 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.164 4.164 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.213 4.213 26 C -0.072 4.072 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.137 0.863 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -30.098 -1.583 0.016 30.139 hybrid contribution -0.271 1.278 -0.882 1.577 sum -30.369 -0.304 -0.866 30.383 Atomic orbital electron populations 1.21811 0.92472 1.03117 1.03516 1.23045 0.95347 0.79911 1.02871 1.86464 1.24343 1.32778 1.84488 1.23140 0.80953 0.92230 0.74293 1.90852 1.59711 1.42342 1.42279 1.21742 0.95626 0.93833 1.08493 1.23426 0.89430 0.90073 0.74334 1.90638 1.73247 1.30306 1.30600 1.23961 0.98699 1.01074 1.07112 1.88104 0.97327 1.14356 1.97982 1.22142 0.95911 0.95075 1.04275 1.18536 0.91302 1.14677 0.94008 1.20588 0.93621 0.96298 0.96313 1.21133 0.94287 1.11543 0.98509 1.19434 0.85135 0.91560 0.93328 1.83973 1.13834 1.76602 1.33116 1.21322 0.89785 1.52714 0.83086 0.88958 1.25313 0.95367 0.96377 0.99379 1.70027 1.07030 1.45187 1.27136 0.85765 0.78305 0.79248 0.80044 1.19444 1.20220 1.19410 1.20186 0.93633 1.11157 0.96328 1.20481 0.93116 0.97149 0.96466 0.91443 0.90124 0.91437 0.91095 0.91092 0.84352 0.84367 0.86892 0.86905 0.90203 0.90244 0.87317 0.85353 0.91854 0.86289 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.29 37.16 0.38 -0.23 16 2 C 0.06 0.42 6.19 37.16 0.23 0.65 16 3 O -0.36 -2.91 10.22 -39.24 -0.40 -3.31 16 4 C 0.45 4.32 7.95 36.00 0.29 4.61 16 5 O -0.47 -6.64 13.94 -26.86 -0.37 -7.01 16 6 C -0.16 -0.87 6.23 -29.04 -0.18 -1.05 16 7 C 0.36 3.48 7.17 -29.03 -0.21 3.27 16 8 O -0.38 -5.86 13.70 -18.51 -0.25 -6.11 16 9 C -0.16 -1.30 6.36 36.01 0.23 -1.08 16 10 S -0.21 -2.91 20.86 -107.50 -2.24 -5.16 16 11 C -0.03 -0.35 6.07 36.00 0.22 -0.13 16 12 C -0.18 -3.10 5.14 -104.58 -0.54 -3.64 16 13 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 14 C -0.24 -5.12 9.17 -39.39 -0.36 -5.48 16 15 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 16 O -0.17 -4.93 9.76 0.05 0.00 -4.93 16 17 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 20 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 21 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 25 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 26 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.11 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -36.49 381.35 -8.57 -45.07 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.62 Total: 0.82 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.17 Total: -16.17 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.76 Total: -24.34 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.03 Total: -21.36 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.24 Total: -5.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.49 -8.57 -45.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758158063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.121 kcal (2) G-P(sol) polarization free energy of solvation -36.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds