Wall clock time and date at job start Tue Mar 31 2020 21:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47364 * 2 1 4 4 C 1.34224 * 117.00412 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99962 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00241 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47139 * 180.02562 * 6 4 3 8 8 O 1.20761 * 120.00087 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00168 * 180.02562 * 7 6 4 10 10 S 1.81396 * 109.47484 * 179.97438 * 9 7 6 11 11 C 1.81401 * 103.00206 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.46965 * 179.97438 * 11 10 9 13 13 C 1.38299 * 119.93247 * 90.00290 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09001 * 109.47037 * 59.99758 * 1 2 3 28 28 H 1.09004 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46981 * 299.99515 * 1 2 3 30 30 H 1.09000 * 109.46822 * 240.00034 * 2 1 3 31 31 H 1.09001 * 109.47037 * 120.00242 * 2 1 3 32 32 H 1.09000 * 109.47580 * 60.00329 * 6 4 3 33 33 H 1.08999 * 109.47368 * 299.99766 * 6 4 3 34 34 H 1.09001 * 109.47059 * 59.99481 * 9 7 6 35 35 H 1.09000 * 109.46752 * 299.99825 * 9 7 6 36 36 H 1.08998 * 109.46561 * 60.00425 * 11 10 9 37 37 H 1.08996 * 109.47353 * 300.00072 * 11 10 9 38 38 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9373 0.0000 7 6 5.4256 2.8584 -0.0014 8 8 5.9739 1.7825 -0.0022 9 6 6.2465 4.1223 -0.0006 10 16 8.0101 3.6980 -0.0019 11 6 8.8204 5.3210 -0.0015 12 6 10.3159 5.1358 -0.0018 13 6 11.0005 5.0515 -1.2005 14 6 12.3711 4.8823 -1.2043 15 6 13.0619 4.7963 -0.0025 16 8 14.4092 4.6305 -0.0029 17 6 15.0307 4.6718 -1.1987 18 1 14.4507 4.7491 -2.1063 19 6 16.4147 4.6149 -1.2630 20 7 17.1213 4.5211 -0.1573 21 14 17.2758 4.6728 -2.9196 22 1 16.9364 5.9431 -3.6099 23 1 18.7450 4.5974 -2.7169 24 1 16.8305 3.5244 -3.7493 25 6 12.3709 4.8750 1.1996 26 6 11.0009 5.0499 1.1965 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5853 3.4690 0.8905 33 1 3.5844 3.4700 -0.8895 34 1 6.0142 4.7059 0.8903 35 1 6.0127 4.7079 -0.8897 36 1 8.5235 5.8750 0.8890 37 1 8.5224 5.8761 -0.8909 38 1 10.4628 5.1188 -2.1347 39 1 12.9051 4.8169 -2.1406 40 1 18.0894 4.4809 -0.2024 41 1 12.9047 4.8040 2.1357 42 1 10.4635 5.1157 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758158063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:51 Heat of formation + Delta-G solvation = -145.559103 kcal Electronic energy + Delta-G solvation = -24463.252182 eV Core-core repulsion = 20500.083416 eV Total energy + Delta-G solvation = -3963.168766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79548 -40.79598 -40.13694 -38.44184 -37.55399 -34.41790 -33.28643 -32.67869 -32.30254 -31.80958 -30.12492 -27.94615 -26.67613 -24.54120 -23.65823 -22.74281 -22.24058 -20.64246 -19.86978 -18.96581 -18.82118 -17.90117 -17.65880 -17.02834 -16.77990 -16.62346 -16.42986 -16.34871 -16.02831 -15.54999 -15.29857 -15.22477 -15.11085 -14.61399 -14.34983 -14.24821 -14.10280 -13.89490 -13.61533 -13.58003 -13.24415 -13.04643 -12.90005 -12.80651 -12.51461 -12.45969 -12.37463 -12.22470 -12.14844 -11.67472 -11.54208 -11.20915 -10.90801 -10.70393 -10.65635 -9.81129 -8.90037 -8.61554 -8.48471 -6.16663 0.18056 0.58338 0.95226 1.02297 1.17605 1.34554 1.45421 1.50973 1.58919 1.77010 2.17265 2.83984 2.91240 3.18310 3.48567 3.52433 3.90421 3.97846 3.98341 4.07401 4.17242 4.19828 4.22997 4.32928 4.36287 4.39213 4.40227 4.52658 4.57074 4.66460 4.76745 4.86456 4.92242 5.04809 5.12785 5.15262 5.26571 5.46217 5.53436 5.68728 5.72622 6.00906 6.17596 6.48581 6.75766 6.95765 7.75397 8.74333 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.001580 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.959087 B =17718.388430 C =18091.104839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.448 3.552 5 O -0.525 6.525 6 C -0.145 4.145 7 C 0.359 3.641 8 O -0.452 6.452 9 C -0.136 4.136 10 S -0.297 6.297 11 C -0.013 4.013 12 C -0.157 4.157 13 C -0.050 4.050 14 C -0.246 4.246 15 C 0.118 3.882 16 O -0.231 6.231 17 C -0.417 4.417 18 H 0.102 0.898 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.019 2.981 22 H -0.255 1.255 23 H -0.271 1.271 24 H -0.259 1.259 25 C -0.207 4.207 26 C -0.048 4.048 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.114 0.886 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.423 2.788 -1.251 36.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.291 3.709 5 O -0.413 6.413 6 C -0.182 4.182 7 C 0.232 3.768 8 O -0.323 6.323 9 C -0.283 4.283 10 S -0.068 6.068 11 C -0.160 4.160 12 C -0.159 4.159 13 C -0.070 4.070 14 C -0.265 4.265 15 C 0.067 3.933 16 O -0.137 6.137 17 C -0.493 4.493 18 H 0.119 0.881 19 C -0.219 4.219 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.179 1.179 23 H -0.195 1.195 24 H -0.183 1.183 25 C -0.227 4.227 26 C -0.068 4.068 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.201 0.799 33 H 0.200 0.800 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.159 0.841 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -35.148 0.819 -0.999 35.172 hybrid contribution 0.695 0.557 -0.456 1.001 sum -34.452 1.376 -1.455 34.511 Atomic orbital electron populations 1.21810 0.90068 1.04257 1.04005 1.23220 0.97209 0.79522 1.02063 1.86479 1.23764 1.33236 1.83959 1.24059 0.80885 0.93425 0.72498 1.90850 1.60894 1.44528 1.45057 1.21910 0.92095 0.91733 1.12511 1.24193 0.91453 0.89482 0.71665 1.90656 1.74779 1.32764 1.34122 1.24074 0.92524 1.00884 1.10866 1.88515 1.04071 1.15852 1.98351 1.22107 0.91984 0.94645 1.07276 1.19109 0.94252 1.09709 0.92836 1.20963 0.92203 0.95253 0.98572 1.21252 0.95965 1.11924 0.97341 1.19991 0.84359 0.93563 0.95418 1.83939 1.15973 1.80132 1.33649 1.21808 0.90621 1.53221 0.83605 0.88057 1.26607 0.95789 0.95717 1.03800 1.70177 1.07284 1.48319 1.29932 0.84647 0.76942 0.79954 0.74669 1.17924 1.19524 1.18349 1.20458 0.95316 1.11516 0.95375 1.20908 0.91656 0.95520 0.98715 0.90901 0.88729 0.90884 0.92016 0.91996 0.79907 0.79953 0.82927 0.83009 0.87126 0.87370 0.84070 0.86219 0.91776 0.86751 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 10.29 71.98 0.74 -0.15 16 2 C 0.05 0.69 6.19 71.98 0.45 1.13 16 3 O -0.36 -4.98 10.22 -51.36 -0.52 -5.51 16 4 C 0.45 7.67 7.95 71.23 0.57 8.24 16 5 O -0.53 -15.11 13.94 29.71 0.41 -14.69 16 6 C -0.14 -0.87 6.23 29.10 0.18 -0.69 16 7 C 0.36 5.65 7.17 29.10 0.21 5.85 16 8 O -0.45 -13.60 13.70 21.98 0.30 -13.30 16 9 C -0.14 -1.42 6.36 71.24 0.45 -0.97 16 10 S -0.30 -7.31 20.86 -56.49 -1.18 -8.49 16 11 C -0.01 -0.27 6.07 71.23 0.43 0.16 16 12 C -0.16 -4.84 5.14 -19.84 -0.10 -4.94 16 13 C -0.05 -1.75 9.69 22.25 0.22 -1.53 16 14 C -0.25 -10.93 9.17 22.39 0.21 -10.73 16 15 C 0.12 6.03 6.65 22.58 0.15 6.18 16 16 O -0.23 -14.20 9.76 -22.72 -0.22 -14.43 16 17 C -0.42 -24.71 9.49 67.92 0.64 -24.06 16 18 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 19 C -0.02 -1.23 5.49 84.84 0.47 -0.77 16 20 N -0.92 -57.16 13.67 21.62 0.30 -56.86 16 21 Si 1.02 43.39 29.55 68.60 2.03 45.42 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 25 C -0.21 -9.05 9.99 22.39 0.22 -8.82 16 26 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 27 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.18 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.18 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.11 1.66 8.08 -2.39 -0.02 1.64 16 37 H 0.11 1.67 8.08 -2.39 -0.02 1.65 16 38 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 42 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -92.45 381.35 7.19 -85.25 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.03 Total: 15.13 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 5.05 Total: -32.52 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.30 Total: -56.86 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.03 Total: -47.93 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -7.31 SS G_CDS: -1.18 Total: -8.49 kcal Total: -92.45 7.19 -85.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758158063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.308 kcal (2) G-P(sol) polarization free energy of solvation -92.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds