Wall clock time and date at job start Tue Mar 31 2020 20:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99517 * 3 2 1 5 5 H 1.48497 * 109.47359 * 29.99493 * 3 2 1 6 6 H 1.48494 * 109.47150 * 149.99879 * 3 2 1 7 7 C 1.38987 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99913 * 180.02562 * 7 2 1 9 9 N 1.37315 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.36496 * 126.06669 * 180.28610 * 9 7 2 11 11 C 1.35698 * 107.50504 * 180.12747 * 10 9 7 12 12 N 1.40538 * 126.08686 * 179.87666 * 11 10 9 13 13 C 1.34772 * 119.99989 * 179.71345 * 12 11 10 14 14 O 1.21611 * 120.00250 * 359.97438 * 13 12 11 15 15 C 1.47512 * 119.99886 * 180.02562 * 13 12 11 16 16 C 1.39998 * 120.59616 * 0.02562 * 15 13 12 17 17 C 1.38336 * 118.34498 * 180.30000 * 16 15 13 18 18 C 1.38354 * 119.45935 * 359.42498 * 17 16 15 19 19 N 1.31877 * 121.18647 * 0.59227 * 18 17 16 20 20 C 1.32231 * 121.80519 * 359.71291 * 19 18 17 21 21 O 1.35426 * 119.80649 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99761 * 359.97189 * 21 20 19 23 23 C 1.52998 * 109.46961 * 180.02562 * 22 21 20 24 24 F 1.39908 * 109.47190 * 299.99884 * 23 22 21 25 25 F 1.39901 * 109.47524 * 60.00248 * 23 22 21 26 26 C 1.40664 * 107.82770 * 359.61150 * 11 10 9 27 27 N 1.30898 * 108.39021 * 0.24282 * 26 11 10 28 28 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 29 29 H 1.07996 * 126.25059 * 359.97438 * 10 9 7 30 30 H 0.97007 * 119.99607 * 359.71535 * 12 11 10 31 31 H 1.08002 * 120.82381 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.26855 * 179.72022 * 17 16 15 33 33 H 1.08002 * 119.40716 * 180.31953 * 18 17 16 34 34 H 1.08997 * 109.46957 * 300.00396 * 22 21 20 35 35 H 1.08996 * 109.46946 * 60.00194 * 22 21 20 36 36 H 1.09002 * 109.47111 * 180.02562 * 23 22 21 37 37 H 1.08002 * 125.80515 * 180.22151 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4443 2.6527 0.6999 6 1 3.5444 1.4403 0.7000 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6404 0.0065 11 6 0.8578 -4.5385 0.0013 12 7 0.9889 -5.9378 0.0023 13 6 -0.1103 -6.7176 0.0024 14 8 -1.2156 -6.2105 0.0022 15 6 0.0274 -8.1863 0.0040 16 6 1.2937 -8.7833 0.0060 17 6 1.3686 -10.1646 0.0010 18 6 0.2025 -10.9093 0.0065 19 7 -0.9802 -10.3260 0.0047 20 6 -1.1083 -9.0100 0.0032 21 8 -2.3430 -8.4537 0.0019 22 6 -3.4575 -9.3483 0.0016 23 6 -4.7581 -8.5425 -0.0006 24 9 -4.8085 -7.7352 1.1409 25 9 -4.8061 -7.7374 -1.1437 26 6 -0.3513 -3.8197 0.0009 27 7 -0.0715 -2.5410 0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 2.9301 -3.8708 0.0117 30 1 1.8706 -6.3423 0.0029 31 1 2.1897 -8.1804 0.0067 32 1 2.3294 -10.6577 -0.0022 33 1 0.2620 -11.9877 0.0079 34 1 -3.4184 -9.9770 -0.8879 35 1 -3.4199 -9.9758 0.8920 36 1 -5.6082 -9.2248 -0.0004 37 1 -1.3420 -4.2497 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761119330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:28 Heat of formation + Delta-G solvation = -40.207738 kcal Electronic energy + Delta-G solvation = -28302.929628 eV Core-core repulsion = 23719.241261 eV Total energy + Delta-G solvation = -4583.688367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.91536 -46.95108 -41.01689 -39.69760 -38.33956 -38.04665 -34.20997 -33.33972 -32.55603 -31.52554 -30.20935 -29.74329 -27.69746 -25.22673 -24.55454 -23.81202 -22.57827 -21.15851 -20.55880 -19.38877 -18.99421 -17.67667 -17.55136 -17.47697 -17.13002 -16.81417 -16.05721 -16.00968 -15.44749 -15.27089 -14.81982 -14.52432 -14.47658 -13.84758 -13.81118 -13.66412 -13.47626 -13.28465 -13.14949 -13.00231 -12.85088 -12.62273 -12.29901 -11.65057 -11.49359 -11.37357 -11.23807 -11.15338 -10.91039 -10.51086 -10.25142 -10.12050 -10.03049 -9.12498 -9.12179 -8.75433 -8.72983 -8.00670 -6.64587 -6.51705 -4.18362 0.55414 1.00726 2.58247 2.91855 3.07084 3.07205 3.12620 3.50063 3.57267 3.64065 3.87480 3.90377 3.97601 4.04574 4.31759 4.49837 4.52188 4.61635 4.65631 4.78442 4.92502 5.01467 5.06094 5.12769 5.20660 5.36168 5.60288 5.81869 6.05783 6.27814 6.50236 6.91958 6.97522 7.01176 7.17279 7.28729 7.50175 7.90121 8.22104 8.32295 8.68208 8.90673 9.42255 9.72054 10.44218 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.002887 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.599336 B = 9695.100086 C =11449.890141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.084 4.084 11 C -0.058 4.058 12 N -0.619 5.619 13 C 0.541 3.459 14 O -0.505 6.505 15 C -0.186 4.186 16 C -0.014 4.014 17 C -0.217 4.217 18 C 0.156 3.844 19 N -0.548 5.548 20 C 0.368 3.632 21 O -0.253 6.253 22 C 0.012 3.988 23 C 0.273 3.727 24 F -0.195 7.195 25 F -0.195 7.195 26 C -0.030 4.030 27 N -0.260 5.260 28 H 0.275 0.725 29 H 0.145 0.855 30 H 0.393 0.607 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.163 0.837 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -22.671 0.020 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.236 4.236 11 C -0.164 4.164 12 N -0.262 5.262 13 C 0.327 3.673 14 O -0.381 6.381 15 C -0.192 4.192 16 C -0.040 4.040 17 C -0.237 4.237 18 C 0.000 4.000 19 N -0.272 5.272 20 C 0.188 3.812 21 O -0.157 6.157 22 C -0.065 4.065 23 C 0.219 3.781 24 F -0.176 7.176 25 F -0.176 7.176 26 C -0.205 4.205 27 N -0.091 5.091 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.227 0.773 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.236 -21.099 0.020 21.217 hybrid contribution 2.083 -0.128 -0.004 2.087 sum -0.153 -21.227 0.017 21.228 Atomic orbital electron populations 1.70221 1.06115 1.27964 1.35225 1.25642 0.95696 1.00247 0.95547 0.85832 0.79364 0.80027 0.78933 1.19615 1.20103 1.18843 1.19859 0.91632 0.80576 1.53492 0.86650 1.44553 1.04087 1.03268 1.39124 1.21225 0.96733 0.85398 1.20196 1.17234 0.94393 0.80961 1.23794 1.42338 1.07750 1.04602 1.71556 1.17551 0.84964 0.84927 0.79895 1.90769 1.25056 1.73717 1.48530 1.20195 0.91952 0.94925 1.12156 1.21705 0.96115 0.95225 0.90979 1.21915 1.00428 0.94161 1.07198 1.22573 0.86316 1.00353 0.90794 1.67413 1.29411 1.09664 1.20728 1.19743 0.85365 0.87371 0.88711 1.86645 1.10601 1.32462 1.86019 1.23904 0.84312 0.92800 1.05495 1.22014 0.98079 0.85805 0.72186 1.93055 1.97517 1.76259 1.50768 1.93053 1.97525 1.76371 1.50643 1.24161 0.98138 0.90673 1.07542 1.78265 0.90031 1.15091 1.25685 0.91460 0.83730 0.77349 0.83620 0.83892 0.81940 0.88633 0.88622 0.85465 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.91 11.81 55.49 0.66 -21.26 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 19.19 29.55 -169.99 -5.02 14.16 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.32 -8.68 10.25 -14.82 -0.15 -8.83 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 9 N -0.14 -3.99 3.74 -11.41 -0.04 -4.04 16 10 C -0.08 -2.02 11.49 -16.38 -0.19 -2.21 16 11 C -0.06 -1.38 6.90 -83.86 -0.58 -1.96 16 12 N -0.62 -11.45 5.42 -10.94 -0.06 -11.51 16 13 C 0.54 10.39 7.74 -12.48 -0.10 10.29 16 14 O -0.51 -11.85 12.34 -16.50 -0.20 -12.05 16 15 C -0.19 -2.74 5.90 -104.69 -0.62 -3.36 16 16 C -0.01 -0.14 9.64 -38.89 -0.37 -0.52 16 17 C -0.22 -1.67 10.09 -39.50 -0.40 -2.07 16 18 C 0.16 1.31 11.17 -17.49 -0.20 1.11 16 19 N -0.55 -6.35 9.21 -12.98 -0.12 -6.47 16 20 C 0.37 5.39 7.51 -16.61 -0.12 5.27 16 21 O -0.25 -4.09 8.10 -39.74 -0.32 -4.42 16 22 C 0.01 0.13 5.53 37.16 0.21 0.34 16 23 C 0.27 2.95 5.63 37.16 0.21 3.16 16 24 F -0.19 -2.83 17.28 2.25 0.04 -2.80 16 25 F -0.19 -2.83 17.28 2.25 0.04 -2.79 16 26 C -0.03 -0.81 10.85 -17.03 -0.18 -1.00 16 27 N -0.26 -7.78 10.39 30.80 0.32 -7.46 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 30 H 0.39 5.43 6.93 -40.82 -0.28 5.15 16 31 H 0.15 1.09 6.51 -52.49 -0.34 0.75 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.10 0.86 8.10 -51.93 -0.42 0.43 16 36 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.18 4.89 5.91 -52.49 -0.31 4.58 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -38.33 338.65 -5.22 -43.55 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.01 Total: 8.64 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.59 Total: 1.33 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.75 Total: -50.73 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.53 Total: -16.47 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.08 Total: -5.59 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.33 -5.22 -43.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761119330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.347 kcal (2) G-P(sol) polarization free energy of solvation -38.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds