Wall clock time and date at job start Tue Mar 31 2020 20:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99517 * 3 2 1 5 5 H 1.48497 * 109.47359 * 29.99493 * 3 2 1 6 6 H 1.48494 * 109.47150 * 149.99879 * 3 2 1 7 7 C 1.38987 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99913 * 180.02562 * 7 2 1 9 9 N 1.37315 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.36496 * 126.06669 * 180.28610 * 9 7 2 11 11 C 1.35698 * 107.50504 * 180.12747 * 10 9 7 12 12 N 1.40538 * 126.08686 * 179.87666 * 11 10 9 13 13 C 1.34772 * 119.99989 * 179.71345 * 12 11 10 14 14 O 1.21611 * 120.00250 * 359.97438 * 13 12 11 15 15 C 1.47512 * 119.99886 * 180.02562 * 13 12 11 16 16 C 1.39998 * 120.59616 * 0.02562 * 15 13 12 17 17 C 1.38336 * 118.34498 * 180.30000 * 16 15 13 18 18 C 1.38354 * 119.45935 * 359.42498 * 17 16 15 19 19 N 1.31877 * 121.18647 * 0.59227 * 18 17 16 20 20 C 1.32231 * 121.80519 * 359.71291 * 19 18 17 21 21 O 1.35426 * 119.80649 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99761 * 359.97189 * 21 20 19 23 23 C 1.52998 * 109.46961 * 180.02562 * 22 21 20 24 24 F 1.39908 * 109.47190 * 299.99884 * 23 22 21 25 25 F 1.39901 * 109.47524 * 60.00248 * 23 22 21 26 26 C 1.40664 * 107.82770 * 359.61150 * 11 10 9 27 27 N 1.30898 * 108.39021 * 0.24282 * 26 11 10 28 28 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 29 29 H 1.07996 * 126.25059 * 359.97438 * 10 9 7 30 30 H 0.97007 * 119.99607 * 359.71535 * 12 11 10 31 31 H 1.08002 * 120.82381 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.26855 * 179.72022 * 17 16 15 33 33 H 1.08002 * 119.40716 * 180.31953 * 18 17 16 34 34 H 1.08997 * 109.46957 * 300.00396 * 22 21 20 35 35 H 1.08996 * 109.46946 * 60.00194 * 22 21 20 36 36 H 1.09002 * 109.47111 * 180.02562 * 23 22 21 37 37 H 1.08002 * 125.80515 * 180.22151 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4443 2.6527 0.6999 6 1 3.5444 1.4403 0.7000 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6404 0.0065 11 6 0.8578 -4.5385 0.0013 12 7 0.9889 -5.9378 0.0023 13 6 -0.1103 -6.7176 0.0024 14 8 -1.2156 -6.2105 0.0022 15 6 0.0274 -8.1863 0.0040 16 6 1.2937 -8.7833 0.0060 17 6 1.3686 -10.1646 0.0010 18 6 0.2025 -10.9093 0.0065 19 7 -0.9802 -10.3260 0.0047 20 6 -1.1083 -9.0100 0.0032 21 8 -2.3430 -8.4537 0.0019 22 6 -3.4575 -9.3483 0.0016 23 6 -4.7581 -8.5425 -0.0006 24 9 -4.8085 -7.7352 1.1409 25 9 -4.8061 -7.7374 -1.1437 26 6 -0.3513 -3.8197 0.0009 27 7 -0.0715 -2.5410 0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 2.9301 -3.8708 0.0117 30 1 1.8706 -6.3423 0.0029 31 1 2.1897 -8.1804 0.0067 32 1 2.3294 -10.6577 -0.0022 33 1 0.2620 -11.9877 0.0079 34 1 -3.4184 -9.9770 -0.8879 35 1 -3.4199 -9.9758 0.8920 36 1 -5.6082 -9.2248 -0.0004 37 1 -1.3420 -4.2497 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761119330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:27 Heat of formation + Delta-G solvation = -69.555672 kcal Electronic energy + Delta-G solvation = -28304.202249 eV Core-core repulsion = 23719.241261 eV Total energy + Delta-G solvation = -4584.960988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91958 -47.99362 -42.07307 -41.46936 -39.85753 -39.03280 -35.94741 -35.07366 -33.64532 -32.39382 -32.18013 -30.70128 -29.50814 -26.96298 -25.63843 -24.87250 -23.43385 -22.92289 -22.16312 -21.21035 -19.93418 -19.38088 -18.62352 -18.52453 -18.19662 -17.89859 -17.41340 -17.10449 -17.00804 -16.56780 -15.99516 -15.96344 -15.81277 -15.37322 -15.10467 -14.86255 -14.78368 -14.62290 -14.37076 -14.25498 -14.12733 -13.53109 -13.47033 -13.32006 -13.19456 -12.90793 -12.83946 -12.32337 -12.08175 -12.01480 -11.85937 -11.05450 -11.03215 -11.01106 -10.81525 -10.56869 -10.10362 -9.61208 -8.51786 -8.46286 -6.23989 -0.34219 0.22336 1.27363 1.39985 1.58431 1.65335 1.75522 1.92444 2.01737 2.25311 2.47645 2.82401 2.86635 2.89543 3.10168 3.21774 3.27159 3.47810 3.72493 3.77386 3.92112 4.04902 4.20513 4.34325 4.38111 4.43952 4.50144 4.62987 4.89025 5.00187 5.08901 5.11009 5.28977 5.40824 5.45800 5.95969 6.09863 6.31204 6.65102 6.73202 6.77524 7.38998 7.47781 7.67911 8.53225 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.002887 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.599336 B = 9695.100086 C =11449.890141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.009 4.009 3 Si 1.022 2.978 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.354 4.354 8 H 0.144 0.856 9 N -0.167 5.167 10 C -0.078 4.078 11 C -0.043 4.043 12 N -0.610 5.610 13 C 0.539 3.461 14 O -0.559 6.559 15 C -0.224 4.224 16 C -0.006 4.006 17 C -0.198 4.198 18 C 0.164 3.836 19 N -0.553 5.553 20 C 0.348 3.652 21 O -0.298 6.298 22 C 0.008 3.992 23 C 0.259 3.741 24 F -0.222 7.222 25 F -0.222 7.222 26 C -0.062 4.062 27 N -0.311 5.311 28 H 0.276 0.724 29 H 0.194 0.806 30 H 0.418 0.582 31 H 0.173 0.827 32 H 0.191 0.809 33 H 0.209 0.791 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.192 0.808 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -25.816 0.045 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.164 1.164 7 C -0.485 4.485 8 H 0.162 0.838 9 N 0.064 4.936 10 C -0.228 4.228 11 C -0.150 4.150 12 N -0.256 5.256 13 C 0.328 3.672 14 O -0.438 6.438 15 C -0.231 4.231 16 C -0.032 4.032 17 C -0.218 4.218 18 C 0.008 3.992 19 N -0.277 5.277 20 C 0.169 3.831 21 O -0.204 6.204 22 C -0.068 4.068 23 C 0.206 3.794 24 F -0.203 7.203 25 F -0.203 7.203 26 C -0.237 4.237 27 N -0.143 5.143 28 H 0.085 0.915 29 H 0.211 0.789 30 H 0.256 0.744 31 H 0.190 0.810 32 H 0.208 0.792 33 H 0.226 0.774 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.209 0.791 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.389 -24.319 0.046 24.359 hybrid contribution 0.995 0.494 -0.014 1.111 sum 2.385 -23.825 0.032 23.944 Atomic orbital electron populations 1.70422 1.08579 1.29089 1.37351 1.26944 0.96455 1.04520 0.94113 0.84560 0.78305 0.73869 0.79237 1.18867 1.20372 1.16446 1.20670 0.93054 0.80799 1.53932 0.83827 1.44867 1.03544 1.04918 1.40287 1.21997 0.98783 0.83983 1.18022 1.17314 0.92852 0.83505 1.21283 1.42207 1.09288 1.02358 1.71737 1.18382 0.84034 0.87060 0.77751 1.90743 1.27176 1.75280 1.50574 1.19946 0.94410 0.91764 1.16940 1.22081 0.94865 0.96877 0.89339 1.22433 1.02257 0.92808 1.04254 1.23530 0.85520 1.02544 0.87646 1.67519 1.31197 1.07867 1.21159 1.19944 0.84894 0.88572 0.89712 1.86588 1.12277 1.35100 1.86404 1.24184 0.82871 0.92527 1.07183 1.22930 1.00708 0.85579 0.70136 1.92991 1.97733 1.77338 1.52282 1.92988 1.97741 1.77445 1.52159 1.24097 0.98986 0.91080 1.09506 1.78157 0.92182 1.16370 1.27575 0.91457 0.78939 0.74378 0.81009 0.79206 0.77415 0.86786 0.86773 0.79146 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.37 11.81 21.66 0.26 -49.11 16 2 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 3 Si 1.02 39.39 29.55 68.60 2.03 41.41 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 7 C -0.35 -19.09 10.25 84.01 0.86 -18.23 16 8 H 0.14 6.62 7.83 -2.91 -0.02 6.60 16 9 N -0.17 -9.57 3.74 -190.01 -0.71 -10.28 16 10 C -0.08 -3.67 11.49 83.38 0.96 -2.71 16 11 C -0.04 -2.10 6.90 37.75 0.26 -1.84 16 12 N -0.61 -22.49 5.42 -306.79 -1.66 -24.15 16 13 C 0.54 21.43 7.74 86.69 0.67 22.11 16 14 O -0.56 -28.30 12.34 16.75 0.21 -28.09 16 15 C -0.22 -6.50 5.90 -19.91 -0.12 -6.61 16 16 C -0.01 -0.10 9.64 22.72 0.22 0.12 16 17 C -0.20 -1.97 10.09 22.32 0.23 -1.75 16 18 C 0.16 1.95 11.17 84.71 0.95 2.90 16 19 N -0.55 -11.47 9.21 -308.00 -2.84 -14.30 16 20 C 0.35 10.12 7.51 85.13 0.64 10.76 16 21 O -0.30 -10.12 8.10 -66.40 -0.54 -10.66 16 22 C 0.01 0.18 5.53 71.98 0.40 0.58 16 23 C 0.26 5.74 5.63 71.98 0.41 6.15 16 24 F -0.22 -6.89 17.28 44.97 0.78 -6.11 16 25 F -0.22 -6.88 17.28 44.97 0.78 -6.11 16 26 C -0.06 -3.62 10.85 85.42 0.93 -2.69 16 27 N -0.31 -19.72 10.39 -56.46 -0.59 -20.31 16 28 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.19 6.96 8.06 -2.91 -0.02 6.94 16 30 H 0.42 10.66 6.93 -92.70 -0.64 10.02 16 31 H 0.17 1.82 6.51 -2.91 -0.02 1.80 16 32 H 0.19 0.21 8.06 -2.91 -0.02 0.18 16 33 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 34 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 35 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 36 H 0.19 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.16 9.72 5.91 -2.91 -0.02 9.71 16 Total: -1.00 -95.06 338.65 5.09 -89.97 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.52 Total: 28.98 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.86 Total: 8.75 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -5.54 Total: -118.15 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.33 Total: -38.75 kcal Atomic # 9 Polarization: -13.77 SS G_CDS: 1.55 Total: -12.22 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.41 kcal Total: -95.06 5.09 -89.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761119330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.414 kcal (2) G-P(sol) polarization free energy of solvation -95.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds