Wall clock time and date at job start Tue Mar 31 2020 20:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48504 * 109.47384 * 240.00227 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00129 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37312 * 119.99460 * 0.27649 * 7 2 1 10 10 C 1.36490 * 126.06289 * 179.72506 * 9 7 2 11 11 C 1.35709 * 107.50801 * 179.97438 * 10 9 7 12 12 N 1.40485 * 126.09085 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00429 * 179.97438 * 12 11 10 14 14 O 1.21549 * 119.99565 * 0.02562 * 13 12 11 15 15 C 1.48109 * 120.00197 * 179.97438 * 13 12 11 16 16 C 1.39189 * 119.69258 * 179.72644 * 15 13 12 17 17 C 1.38729 * 119.18666 * 179.77566 * 16 15 13 18 18 C 1.38379 * 118.56008 * 0.49267 * 17 16 15 19 19 C 1.39237 * 119.30882 * 359.75274 * 18 17 16 20 20 O 1.35667 * 119.61207 * 179.97438 * 19 18 17 21 21 C 1.42898 * 116.99885 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47385 * 179.97438 * 21 20 19 23 23 F 1.39890 * 109.46986 * 299.99893 * 22 21 20 24 24 F 1.39896 * 109.46892 * 59.99868 * 22 21 20 25 25 N 1.31924 * 120.77194 * 359.97438 * 19 18 17 26 26 C 1.40677 * 107.82259 * 359.97438 * 11 10 9 27 27 N 1.30901 * 108.38561 * 359.74766 * 26 11 10 28 28 H 0.97005 * 119.99961 * 359.97438 * 1 2 3 29 29 H 1.08003 * 126.24721 * 359.95307 * 10 9 7 30 30 H 0.97010 * 120.00059 * 0.02562 * 12 11 10 31 31 H 1.08007 * 120.40489 * 0.02562 * 16 15 13 32 32 H 1.08005 * 120.71896 * 180.24611 * 17 16 15 33 33 H 1.08006 * 120.34649 * 179.77540 * 18 17 16 34 34 H 1.09001 * 109.46966 * 299.99959 * 21 20 19 35 35 H 1.09001 * 109.47449 * 59.99734 * 21 20 19 36 36 H 1.09001 * 109.46894 * 179.97438 * 22 21 20 37 37 H 1.08000 * 125.80706 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.1007 1.6965 -1.2125 5 1 1.2819 2.7465 0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3928 -0.0068 10 6 1.8750 -3.6403 -0.0134 11 6 0.8577 -4.5385 -0.0175 12 7 0.9887 -5.9372 -0.0242 13 6 -0.1105 -6.7171 -0.0273 14 8 -1.2152 -6.2102 -0.0247 15 6 0.0277 -8.1917 -0.0348 16 6 -1.1118 -8.9910 -0.0322 17 6 -0.9702 -10.3710 -0.0441 18 6 0.3064 -10.9050 -0.0478 19 6 1.4037 -10.0480 -0.0447 20 8 2.6580 -10.5650 -0.0478 21 6 3.7430 -9.6350 -0.0438 22 6 5.0690 -10.3982 -0.0475 23 9 5.1444 -11.2074 1.0912 24 9 5.1440 -11.1973 -1.1933 25 7 1.2380 -8.7392 -0.0389 26 6 -0.3515 -3.8195 -0.0128 27 7 -0.0715 -2.5409 -0.0006 28 1 -0.4850 0.8401 0.0004 29 1 2.9302 -3.8706 -0.0153 30 1 1.8704 -6.3418 -0.0258 31 1 -2.0942 -8.5423 -0.0251 32 1 -1.8376 -11.0146 -0.0464 33 1 0.4500 -11.9755 -0.0533 34 1 3.6840 -9.0042 -0.9308 35 1 3.6849 -9.0126 0.8491 36 1 5.8966 -9.6888 -0.0449 37 1 -1.3422 -4.2495 -0.0149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761122332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:40 Heat of formation + Delta-G solvation = -45.632190 kcal Electronic energy + Delta-G solvation = -27670.747158 eV Core-core repulsion = 23086.823570 eV Total energy + Delta-G solvation = -4583.923588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.28727 -47.31514 -41.03575 -39.87261 -38.83110 -37.74510 -34.36452 -33.34919 -32.64967 -31.65073 -30.31357 -29.84879 -27.87582 -25.48037 -24.56340 -23.82141 -22.72630 -21.31363 -20.72455 -19.46952 -18.97722 -18.10903 -17.87344 -17.40355 -17.25631 -16.56672 -16.20341 -16.17158 -15.79341 -15.46601 -15.01839 -14.81557 -14.35792 -14.18875 -13.90772 -13.87263 -13.67359 -13.52821 -13.39735 -13.04307 -12.93281 -12.71383 -12.27005 -11.71378 -11.57270 -11.49087 -11.43906 -11.26876 -11.03016 -10.58706 -10.29228 -10.26692 -10.17994 -9.35546 -9.20319 -8.85927 -8.81724 -8.10693 -6.74126 -6.59544 -4.26599 0.51444 1.01303 2.38135 2.74759 2.98695 3.02361 3.06801 3.35024 3.37644 3.52545 3.76042 3.78133 3.83948 3.94818 4.09693 4.41101 4.41578 4.64670 4.73701 4.77519 4.91335 4.96798 4.98636 5.00107 5.14869 5.32624 5.71733 5.91146 6.04618 6.20063 6.41111 6.76288 6.84717 6.90349 7.03827 7.18399 7.41986 7.81231 8.12549 8.22547 8.56040 8.76620 9.32741 9.61828 10.36229 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.002545 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.761003 B =10998.983276 C =12872.949864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.140 5.140 10 C -0.081 4.081 11 C -0.065 4.065 12 N -0.596 5.596 13 C 0.547 3.453 14 O -0.526 6.526 15 C 0.137 3.863 16 C -0.147 4.147 17 C -0.046 4.046 18 C -0.170 4.170 19 C 0.319 3.681 20 O -0.296 6.296 21 C 0.016 3.984 22 C 0.271 3.729 23 F -0.199 7.199 24 F -0.199 7.199 25 N -0.522 5.522 26 C -0.029 4.029 27 N -0.260 5.260 28 H 0.276 0.724 29 H 0.146 0.854 30 H 0.405 0.595 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -19.745 -0.100 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.093 4.907 10 C -0.232 4.232 11 C -0.170 4.170 12 N -0.237 5.237 13 C 0.331 3.669 14 O -0.402 6.402 15 C 0.000 4.000 16 C -0.169 4.169 17 C -0.071 4.071 18 C -0.191 4.191 19 C 0.138 3.862 20 O -0.203 6.203 21 C -0.061 4.061 22 C 0.217 3.783 23 F -0.181 7.181 24 F -0.181 7.181 25 N -0.249 5.249 26 C -0.205 4.205 27 N -0.091 5.091 28 H 0.087 0.913 29 H 0.164 0.836 30 H 0.239 0.761 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.151 0.849 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.119 -17.751 -0.088 18.777 hybrid contribution 0.755 -0.879 -0.014 1.159 sum 6.874 -18.631 -0.102 19.859 Atomic orbital electron populations 1.70204 1.06150 1.28201 1.34894 1.25653 0.95718 1.00307 0.95434 0.85885 0.79154 0.79559 0.79496 1.19129 1.20099 1.19128 1.19851 0.91686 0.80540 1.53442 0.86579 1.44563 1.04087 1.03315 1.38739 1.21249 0.96835 0.85299 1.19858 1.17278 0.94478 0.81002 1.24275 1.42304 1.08533 1.04410 1.68464 1.17594 0.84853 0.84292 0.80145 1.90700 1.25601 1.73093 1.50853 1.20974 0.87745 0.94581 0.96674 1.22042 1.00531 0.93518 1.00780 1.21456 0.96830 0.94818 0.93988 1.21226 0.90523 1.01131 1.06239 1.19630 0.85122 0.88130 0.93308 1.86276 1.11461 1.34171 1.88383 1.23876 0.83621 0.92186 1.06416 1.22141 0.98549 0.85996 0.71591 1.93020 1.97480 1.76288 1.51277 1.93022 1.97483 1.76830 1.50738 1.67144 1.27229 1.12124 1.18425 1.24143 0.98020 0.90751 1.07568 1.78268 0.90073 1.15023 1.25748 0.91325 0.83613 0.76086 0.82830 0.83238 0.83650 0.88118 0.88130 0.84901 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.21 11.81 55.50 0.66 -20.55 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.60 29.55 -169.99 -5.02 13.58 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 8 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 9 N -0.14 -3.79 3.74 -11.40 -0.04 -3.84 16 10 C -0.08 -1.89 11.49 -16.38 -0.19 -2.07 16 11 C -0.06 -1.48 6.90 -83.87 -0.58 -2.06 16 12 N -0.60 -10.97 5.45 -10.78 -0.06 -11.03 16 13 C 0.55 9.91 7.78 -12.21 -0.09 9.82 16 14 O -0.53 -11.07 13.46 5.32 0.07 -10.99 16 15 C 0.14 1.97 6.75 -83.03 -0.56 1.41 16 16 C -0.15 -1.74 9.63 -39.05 -0.38 -2.11 16 17 C -0.05 -0.40 10.16 -39.35 -0.40 -0.80 16 18 C -0.17 -1.60 10.04 -39.16 -0.39 -1.99 16 19 C 0.32 3.66 7.49 -17.14 -0.13 3.54 16 20 O -0.30 -3.21 10.00 -18.70 -0.19 -3.40 16 21 C 0.02 0.13 5.53 37.16 0.21 0.33 16 22 C 0.27 1.91 5.63 37.16 0.21 2.12 16 23 F -0.20 -1.90 17.28 2.25 0.04 -1.86 16 24 F -0.20 -1.90 17.28 2.25 0.04 -1.86 16 25 N -0.52 -6.71 8.39 -9.88 -0.08 -6.79 16 26 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 27 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 28 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.15 2.79 8.06 -52.48 -0.42 2.37 16 30 H 0.40 6.16 8.15 -40.82 -0.33 5.82 16 31 H 0.15 1.76 7.63 -52.48 -0.40 1.36 16 32 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 33 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.18 4.51 5.92 -52.49 -0.31 4.20 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -34.31 343.03 -4.96 -39.27 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -3.12 Total: 9.73 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.74 Total: -0.25 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.79 Total: -49.39 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.12 Total: -14.39 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.08 Total: -3.71 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.31 -4.96 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761122332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.363 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds