Wall clock time and date at job start Tue Mar 31 2020 20:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86801 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46931 * 299.99684 * 3 2 1 6 6 H 1.48492 * 109.47236 * 59.99412 * 3 2 1 7 7 C 1.38986 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00452 * 179.97438 * 7 2 1 9 9 N 1.37318 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.36493 * 126.07042 * 179.97438 * 9 7 2 11 11 C 1.35699 * 107.50705 * 179.97438 * 10 9 7 12 12 N 1.40533 * 126.08091 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99664 * 179.97438 * 12 11 10 14 14 O 1.21607 * 119.99615 * 359.97438 * 13 12 11 15 15 C 1.47603 * 119.99992 * 180.02562 * 13 12 11 16 16 C 1.40285 * 120.49473 * 179.97438 * 15 13 12 17 17 C 1.37959 * 118.35314 * 179.74447 * 16 15 13 18 18 C 1.39168 * 119.26338 * 0.25576 * 17 16 15 19 19 O 1.35509 * 119.52370 * 179.97438 * 18 17 16 20 20 C 1.42897 * 116.99712 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.46748 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.46759 * 299.99625 * 21 20 19 23 23 F 1.39892 * 109.47368 * 59.99822 * 21 20 19 24 24 N 1.32401 * 120.95344 * 0.02562 * 18 17 16 25 25 C 1.31671 * 121.79774 * 359.97438 * 24 18 17 26 26 C 1.40656 * 107.82927 * 0.23826 * 11 10 9 27 27 N 1.30914 * 108.38884 * 359.59124 * 26 11 10 28 28 H 0.97006 * 119.99592 * 0.02562 * 1 2 3 29 29 H 1.07999 * 126.24805 * 359.97438 * 10 9 7 30 30 H 0.96996 * 120.00411 * 359.97438 * 12 11 10 31 31 H 1.08002 * 120.82789 * 0.02809 * 16 15 13 32 32 H 1.07995 * 120.36856 * 180.27512 * 17 16 15 33 33 H 1.09002 * 109.47438 * 299.99777 * 20 19 18 34 34 H 1.08999 * 109.47304 * 60.00419 * 20 19 18 35 35 H 1.09004 * 109.46626 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.68680 * 179.97438 * 25 24 18 37 37 H 1.08000 * 125.80940 * 179.72826 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3463 0.0006 5 1 1.8883 2.3964 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0078 -1.2037 0.0005 8 1 3.0879 -1.2038 0.0001 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0005 11 6 0.8576 -4.5385 0.0011 12 7 0.9887 -5.9377 0.0008 13 6 -0.1106 -6.7176 0.0020 14 8 -1.2158 -6.2104 0.0038 15 6 0.0271 -8.1872 0.0022 16 6 -1.1100 -9.0087 0.0040 17 6 -0.9301 -10.3765 -0.0013 18 6 0.3623 -10.8927 -0.0027 19 8 0.5452 -12.2354 -0.0073 20 6 1.8943 -12.7063 -0.0079 21 6 1.9003 -14.2363 -0.0140 22 9 1.2416 -14.7097 1.1259 23 9 1.2436 -14.7007 -1.1586 24 7 1.4159 -10.0908 0.0015 25 6 1.2902 -8.7801 0.0066 26 6 -0.3515 -3.8197 -0.0041 27 7 -0.0716 -2.5409 0.0012 28 1 -0.4850 0.8401 -0.0004 29 1 2.9300 -3.8709 0.0001 30 1 1.8703 -6.3422 -0.0002 31 1 -2.1018 -8.5811 0.0047 32 1 -1.7827 -11.0393 -0.0046 33 1 2.4074 -12.3378 -0.8962 34 1 2.4060 -12.3442 0.8837 35 1 2.9294 -14.5956 -0.0140 36 1 2.1730 -8.1581 0.0103 37 1 -1.3422 -4.2496 -0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761572142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:45 Heat of formation + Delta-G solvation = -46.085847 kcal Electronic energy + Delta-G solvation = -27032.667379 eV Core-core repulsion = 22448.724119 eV Total energy + Delta-G solvation = -4583.943260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.39175 -47.42102 -41.08769 -39.92479 -38.90605 -37.78544 -34.39591 -33.27934 -32.76765 -31.77601 -30.39594 -29.97036 -27.71852 -25.20208 -24.52952 -24.18733 -22.82034 -21.25340 -20.60065 -19.52752 -19.26479 -17.98160 -17.94197 -17.73477 -17.36088 -17.04145 -16.28064 -16.27324 -15.51085 -15.14310 -15.05978 -14.76710 -14.29691 -14.27209 -14.06508 -13.85031 -13.77757 -13.61177 -13.29445 -13.11107 -13.09487 -12.81764 -12.67822 -11.71339 -11.68780 -11.55562 -11.48739 -11.30382 -10.98228 -10.53226 -10.30463 -10.17114 -10.15866 -9.32585 -9.22103 -8.86877 -8.85010 -8.09879 -6.75021 -6.59246 -4.26249 0.53086 0.92733 2.28315 2.80539 2.98594 3.03032 3.09260 3.24804 3.45276 3.50512 3.63483 3.80273 3.81205 3.83745 3.97330 4.31898 4.41522 4.54267 4.62199 4.73111 4.80139 4.87270 4.91605 4.99027 5.10490 5.31406 5.52246 5.89792 6.02184 6.20395 6.41035 6.69343 6.84553 6.91243 7.04835 7.19186 7.38488 7.82096 8.08971 8.22255 8.56861 8.76200 9.33633 9.62753 10.36704 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.037738 B = 0.001774 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.785426 B =15779.944561 C =16341.919304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.322 4.322 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.083 4.083 11 C -0.062 4.062 12 N -0.615 5.615 13 C 0.547 3.453 14 O -0.531 6.531 15 C -0.202 4.202 16 C 0.015 3.985 17 C -0.189 4.189 18 C 0.332 3.668 19 O -0.293 6.293 20 C 0.017 3.983 21 C 0.270 3.730 22 F -0.199 7.199 23 F -0.199 7.199 24 N -0.544 5.544 25 C 0.171 3.829 26 C -0.030 4.030 27 N -0.260 5.260 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.395 0.605 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.165 0.835 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -23.498 -0.018 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.454 4.454 8 H 0.135 0.865 9 N 0.091 4.909 10 C -0.234 4.234 11 C -0.168 4.168 12 N -0.257 5.257 13 C 0.333 3.667 14 O -0.409 6.409 15 C -0.208 4.208 16 C -0.011 4.011 17 C -0.210 4.210 18 C 0.153 3.847 19 O -0.200 6.200 20 C -0.059 4.059 21 C 0.217 3.783 22 F -0.180 7.180 23 F -0.180 7.180 24 N -0.267 5.267 25 C 0.014 3.986 26 C -0.205 4.205 27 N -0.091 5.091 28 H 0.085 0.915 29 H 0.164 0.836 30 H 0.229 0.771 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.182 0.818 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.626 -22.405 -0.015 23.100 hybrid contribution 0.698 -0.071 -0.003 0.702 sum 6.324 -22.475 -0.017 23.348 Atomic orbital electron populations 1.70226 1.06143 1.27951 1.35165 1.25656 0.95723 1.00326 0.95472 0.85756 0.79626 0.80215 0.78504 1.18670 1.19891 1.19897 1.19935 0.91704 0.80510 1.53296 0.86504 1.44571 1.04076 1.03331 1.38874 1.21256 0.96830 0.85351 1.19952 1.17231 0.94432 0.80905 1.24204 1.42373 1.07893 1.04750 1.70652 1.17645 0.84743 0.85107 0.79181 1.90690 1.25525 1.74216 1.50494 1.20954 0.94945 0.95131 1.09779 1.21580 0.99886 0.91202 0.88414 1.21039 0.95615 0.95686 1.08617 1.19937 0.90325 0.83285 0.91120 1.86257 1.28166 1.17826 1.87752 1.23863 0.83880 0.91917 1.06264 1.22140 0.93634 0.90872 0.71684 1.93030 1.83985 1.89848 1.51142 1.93028 1.84063 1.90128 1.50776 1.67241 1.32773 1.06369 1.20357 1.22619 0.96494 0.89018 0.90505 1.24136 0.98050 0.90711 1.07630 1.78274 0.90100 1.15054 1.25719 0.91454 0.83612 0.77096 0.82434 0.83302 0.88214 0.88203 0.84983 0.81792 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.25 11.81 55.49 0.66 -20.59 16 2 C 0.05 1.16 5.50 -17.51 -0.10 1.06 16 3 Si 0.94 18.65 29.55 -169.99 -5.02 13.62 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.32 -8.38 10.25 -14.82 -0.15 -8.53 16 8 H 0.12 2.71 7.83 -52.48 -0.41 2.29 16 9 N -0.14 -3.81 3.74 -11.41 -0.04 -3.85 16 10 C -0.08 -1.89 11.49 -16.39 -0.19 -2.08 16 11 C -0.06 -1.39 6.90 -83.86 -0.58 -1.97 16 12 N -0.61 -10.44 5.42 -10.92 -0.06 -10.50 16 13 C 0.55 9.31 7.74 -12.44 -0.10 9.21 16 14 O -0.53 -11.02 13.56 5.27 0.07 -10.95 16 15 C -0.20 -2.61 5.89 -104.83 -0.62 -3.23 16 16 C 0.01 0.17 9.70 -38.91 -0.38 -0.20 16 17 C -0.19 -1.94 10.02 -39.34 -0.39 -2.34 16 18 C 0.33 3.61 7.49 -16.96 -0.13 3.48 16 19 O -0.29 -2.97 9.99 -18.22 -0.18 -3.15 16 20 C 0.02 0.12 5.52 37.16 0.21 0.32 16 21 C 0.27 1.54 5.63 37.16 0.21 1.75 16 22 F -0.20 -1.68 17.28 2.25 0.04 -1.64 16 23 F -0.20 -1.68 17.28 2.25 0.04 -1.64 16 24 N -0.54 -5.85 9.18 -12.96 -0.12 -5.97 16 25 C 0.17 1.83 10.71 -17.14 -0.18 1.65 16 26 C -0.03 -0.77 10.85 -17.03 -0.18 -0.95 16 27 N -0.26 -7.48 10.40 30.80 0.32 -7.16 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 30 H 0.40 4.98 6.88 -40.82 -0.28 4.70 16 31 H 0.16 1.75 7.73 -52.49 -0.41 1.34 16 32 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.10 0.57 8.10 -51.93 -0.42 0.15 16 34 H 0.10 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.13 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.17 1.32 6.41 -52.49 -0.34 0.98 16 37 H 0.18 4.49 5.91 -52.49 -0.31 4.18 16 LS Contribution 340.75 15.07 5.13 5.13 Total: -1.00 -35.16 340.75 -4.74 -39.90 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -2.99 Total: 8.62 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.58 Total: -1.82 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.76 Total: -48.07 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.11 Total: -14.10 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.08 Total: -3.28 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.16 -4.74 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761572142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.186 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds