Wall clock time and date at job start Tue Mar 31 2020 20:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86801 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46931 * 299.99684 * 3 2 1 6 6 H 1.48492 * 109.47236 * 59.99412 * 3 2 1 7 7 C 1.38986 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00452 * 179.97438 * 7 2 1 9 9 N 1.37318 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.36493 * 126.07042 * 179.97438 * 9 7 2 11 11 C 1.35699 * 107.50705 * 179.97438 * 10 9 7 12 12 N 1.40533 * 126.08091 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99664 * 179.97438 * 12 11 10 14 14 O 1.21607 * 119.99615 * 359.97438 * 13 12 11 15 15 C 1.47603 * 119.99992 * 180.02562 * 13 12 11 16 16 C 1.40285 * 120.49473 * 179.97438 * 15 13 12 17 17 C 1.37959 * 118.35314 * 179.74447 * 16 15 13 18 18 C 1.39168 * 119.26338 * 0.25576 * 17 16 15 19 19 O 1.35509 * 119.52370 * 179.97438 * 18 17 16 20 20 C 1.42897 * 116.99712 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.46748 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.46759 * 299.99625 * 21 20 19 23 23 F 1.39892 * 109.47368 * 59.99822 * 21 20 19 24 24 N 1.32401 * 120.95344 * 0.02562 * 18 17 16 25 25 C 1.31671 * 121.79774 * 359.97438 * 24 18 17 26 26 C 1.40656 * 107.82927 * 0.23826 * 11 10 9 27 27 N 1.30914 * 108.38884 * 359.59124 * 26 11 10 28 28 H 0.97006 * 119.99592 * 0.02562 * 1 2 3 29 29 H 1.07999 * 126.24805 * 359.97438 * 10 9 7 30 30 H 0.96996 * 120.00411 * 359.97438 * 12 11 10 31 31 H 1.08002 * 120.82789 * 0.02809 * 16 15 13 32 32 H 1.07995 * 120.36856 * 180.27512 * 17 16 15 33 33 H 1.09002 * 109.47438 * 299.99777 * 20 19 18 34 34 H 1.08999 * 109.47304 * 60.00419 * 20 19 18 35 35 H 1.09004 * 109.46626 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.68680 * 179.97438 * 25 24 18 37 37 H 1.08000 * 125.80940 * 179.72826 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3463 0.0006 5 1 1.8883 2.3964 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0078 -1.2037 0.0005 8 1 3.0879 -1.2038 0.0001 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0005 11 6 0.8576 -4.5385 0.0011 12 7 0.9887 -5.9377 0.0008 13 6 -0.1106 -6.7176 0.0020 14 8 -1.2158 -6.2104 0.0038 15 6 0.0271 -8.1872 0.0022 16 6 -1.1100 -9.0087 0.0040 17 6 -0.9301 -10.3765 -0.0013 18 6 0.3623 -10.8927 -0.0027 19 8 0.5452 -12.2354 -0.0073 20 6 1.8943 -12.7063 -0.0079 21 6 1.9003 -14.2363 -0.0140 22 9 1.2416 -14.7097 1.1259 23 9 1.2436 -14.7007 -1.1586 24 7 1.4159 -10.0908 0.0015 25 6 1.2902 -8.7801 0.0066 26 6 -0.3515 -3.8197 -0.0041 27 7 -0.0716 -2.5409 0.0012 28 1 -0.4850 0.8401 -0.0004 29 1 2.9300 -3.8709 0.0001 30 1 1.8703 -6.3422 -0.0002 31 1 -2.1018 -8.5811 0.0047 32 1 -1.7827 -11.0393 -0.0046 33 1 2.4074 -12.3378 -0.8962 34 1 2.4060 -12.3442 0.8837 35 1 2.9294 -14.5956 -0.0140 36 1 2.1730 -8.1581 0.0103 37 1 -1.3422 -4.2496 -0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761572142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:45 Heat of formation + Delta-G solvation = -72.104046 kcal Electronic energy + Delta-G solvation = -27033.795613 eV Core-core repulsion = 22448.724119 eV Total energy + Delta-G solvation = -4585.071494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.92007 -47.97209 -42.07384 -41.52653 -40.25363 -38.80900 -36.01039 -35.03617 -33.67241 -32.68070 -32.13759 -30.88454 -29.39727 -26.90866 -25.34641 -25.27336 -23.52155 -22.90715 -22.11118 -21.25303 -19.98936 -19.48567 -18.70595 -18.52091 -18.32070 -17.91659 -17.40278 -17.11754 -16.99360 -16.55997 -16.15606 -16.13069 -15.63994 -15.22077 -15.13949 -14.88311 -14.86550 -14.70413 -14.35449 -14.27028 -14.26201 -13.81372 -13.45939 -13.32770 -13.29314 -12.93280 -12.83600 -12.36173 -12.02324 -12.01746 -11.88688 -11.18789 -11.10344 -11.03154 -10.81737 -10.64012 -10.09326 -9.75309 -8.51853 -8.45864 -6.22800 -0.42004 0.07419 1.26418 1.41393 1.60258 1.60789 1.62462 1.89745 2.01595 2.25618 2.44133 2.79309 2.81075 2.90805 3.02762 3.10959 3.30146 3.51431 3.63647 3.77739 3.84850 3.96318 4.14997 4.33053 4.41565 4.46035 4.53152 4.58123 4.72386 4.97066 5.02758 5.14924 5.17425 5.30738 5.43701 5.91884 5.97470 6.31967 6.52292 6.69531 6.74966 7.32282 7.48061 7.69377 8.53724 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.037738 B = 0.001774 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.785426 B =15779.944561 C =16341.919304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.239 1.239 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.352 4.352 8 H 0.143 0.857 9 N -0.169 5.169 10 C -0.076 4.076 11 C -0.046 4.046 12 N -0.607 5.607 13 C 0.551 3.449 14 O -0.574 6.574 15 C -0.221 4.221 16 C 0.013 3.987 17 C -0.189 4.189 18 C 0.334 3.666 19 O -0.306 6.306 20 C 0.009 3.991 21 C 0.266 3.734 22 F -0.217 7.217 23 F -0.217 7.217 24 N -0.543 5.543 25 C 0.187 3.813 26 C -0.058 4.058 27 N -0.311 5.311 28 H 0.276 0.724 29 H 0.192 0.808 30 H 0.419 0.581 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.185 0.815 36 H 0.194 0.806 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 -25.317 -0.017 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.162 1.162 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.160 0.840 9 N 0.063 4.937 10 C -0.226 4.226 11 C -0.152 4.152 12 N -0.251 5.251 13 C 0.340 3.660 14 O -0.454 6.454 15 C -0.227 4.227 16 C -0.012 4.012 17 C -0.209 4.209 18 C 0.156 3.844 19 O -0.212 6.212 20 C -0.067 4.067 21 C 0.213 3.787 22 F -0.198 7.198 23 F -0.198 7.198 24 N -0.266 5.266 25 C 0.029 3.971 26 C -0.233 4.233 27 N -0.143 5.143 28 H 0.085 0.915 29 H 0.209 0.791 30 H 0.257 0.743 31 H 0.173 0.827 32 H 0.186 0.814 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.202 0.798 36 H 0.210 0.790 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.893 -24.305 -0.014 25.881 hybrid contribution -0.305 0.172 -0.003 0.351 sum 8.587 -24.133 -0.017 25.615 Atomic orbital electron populations 1.70408 1.08443 1.28992 1.37503 1.26885 0.96472 1.04386 0.94217 0.84538 0.79139 0.74447 0.78093 1.16178 1.19909 1.19921 1.20667 0.92995 0.80818 1.53813 0.83977 1.44855 1.03613 1.04884 1.40391 1.22029 0.98899 0.84052 1.17666 1.17280 0.92896 0.83368 1.21647 1.42246 1.09468 1.02516 1.70917 1.18267 0.83866 0.86717 0.77165 1.90674 1.27275 1.75436 1.52051 1.20608 0.96594 0.92299 1.13168 1.21639 0.99647 0.91806 0.88126 1.21195 0.96410 0.95214 1.08110 1.20165 0.90551 0.83805 0.89902 1.86257 1.30502 1.17222 1.87261 1.24216 0.82393 0.92618 1.07461 1.22747 0.95455 0.90202 0.70249 1.92994 1.84645 1.90018 1.52169 1.92991 1.84720 1.90293 1.51812 1.67351 1.32569 1.06081 1.20647 1.22967 0.96373 0.89278 0.88482 1.24195 0.99123 0.90919 1.09068 1.78167 0.92115 1.16593 1.27451 0.91456 0.79117 0.74256 0.82692 0.81422 0.86980 0.86965 0.79795 0.78974 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.52 11.81 21.66 0.26 -47.27 16 2 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 3 Si 1.02 38.17 29.55 68.60 2.03 40.19 16 4 H -0.24 -7.94 7.11 99.48 0.71 -7.23 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.35 -18.31 10.25 84.01 0.86 -17.45 16 8 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 9 N -0.17 -9.20 3.74 -190.00 -0.71 -9.91 16 10 C -0.08 -3.38 11.49 83.38 0.96 -2.42 16 11 C -0.05 -2.03 6.90 37.75 0.26 -1.77 16 12 N -0.61 -19.71 5.42 -306.71 -1.66 -21.37 16 13 C 0.55 18.51 7.74 86.71 0.67 19.18 16 14 O -0.57 -24.51 13.56 -4.05 -0.05 -24.57 16 15 C -0.22 -5.39 5.89 -20.00 -0.12 -5.50 16 16 C 0.01 0.30 9.70 22.70 0.22 0.52 16 17 C -0.19 -3.56 10.02 22.43 0.22 -3.33 16 18 C 0.33 6.47 7.49 84.83 0.64 7.11 16 19 O -0.31 -5.49 9.99 -88.11 -0.88 -6.37 16 20 C 0.01 0.09 5.52 71.98 0.40 0.49 16 21 C 0.27 2.30 5.63 71.98 0.41 2.70 16 22 F -0.22 -3.25 17.28 44.97 0.78 -2.48 16 23 F -0.22 -3.25 17.28 44.97 0.78 -2.48 16 24 N -0.54 -10.04 9.18 -307.80 -2.82 -12.86 16 25 C 0.19 3.46 10.71 85.03 0.91 4.37 16 26 C -0.06 -3.11 10.85 85.42 0.93 -2.18 16 27 N -0.31 -18.64 10.40 -56.46 -0.59 -19.23 16 28 H 0.28 14.58 8.31 -92.70 -0.77 13.81 16 29 H 0.19 6.47 8.06 -2.91 -0.02 6.45 16 30 H 0.42 9.27 6.88 -92.71 -0.64 8.64 16 31 H 0.16 3.47 7.73 -2.91 -0.02 3.45 16 32 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.11 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.11 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.19 -0.33 8.14 -2.38 -0.02 -0.35 16 36 H 0.19 2.31 6.41 -2.91 -0.02 2.29 16 37 H 0.17 9.09 5.91 -2.91 -0.02 9.07 16 Total: -1.00 -81.25 340.75 4.47 -76.78 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.53 Total: 27.79 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 6.82 Total: 1.76 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -5.53 Total: -110.63 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.94 Total: -30.94 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 1.55 Total: -4.95 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.19 kcal Total: -81.25 4.47 -76.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761572142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.676 kcal (2) G-P(sol) polarization free energy of solvation -81.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds