Wall clock time and date at job start Tue Mar 31 2020 21:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86800 * 119.99559 * 2 1 4 4 H 1.48504 * 109.47394 * 239.99922 * 3 2 1 5 5 H 1.48504 * 109.47452 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47264 * 120.00078 * 3 2 1 7 7 C 1.40026 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00056 * 197.21800 * 7 2 1 9 9 C 1.41546 * 120.00064 * 17.21710 * 7 2 1 10 10 C 1.41170 * 120.99857 * 203.39861 * 9 7 2 11 11 C 1.37583 * 119.01823 * 180.02562 * 10 9 7 12 12 N 1.32088 * 121.10692 * 359.97438 * 11 10 9 13 13 C 1.32465 * 122.23183 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.57950 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99789 * 355.28808 * 14 13 12 16 16 O 1.21275 * 120.00289 * 4.80622 * 15 14 13 17 17 C 1.50695 * 119.99815 * 184.80768 * 15 14 13 18 18 H 1.09005 * 109.50349 * 54.92609 * 17 15 14 19 19 C 1.52909 * 109.50358 * 294.81320 * 17 15 14 20 20 C 1.50592 * 110.32566 * 190.19970 * 19 17 15 21 21 C 1.38090 * 119.90787 * 201.07093 * 20 19 17 22 22 C 1.38319 * 120.14248 * 180.24185 * 21 20 19 23 23 C 1.38394 * 120.46999 * 0.02562 * 22 21 20 24 24 C 1.38030 * 120.03867 * 359.88482 * 23 22 21 25 25 C 1.39403 * 119.65735 * 0.07279 * 24 23 22 26 26 C 1.48130 * 120.38490 * 180.09596 * 25 24 23 27 27 O 1.21473 * 121.44680 * 9.54422 * 26 25 24 28 28 O 1.35753 * 117.10222 * 189.55739 * 26 25 24 29 29 C 1.38596 * 120.83944 * 0.27518 * 13 12 11 30 30 H 0.96998 * 120.00334 * 359.97438 * 1 2 3 31 31 H 1.08007 * 120.49309 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.45042 * 179.97438 * 11 10 9 33 33 H 0.96996 * 120.00109 * 175.01584 * 14 13 12 34 34 H 1.09002 * 109.32522 * 310.45826 * 19 17 15 35 35 H 1.09002 * 109.33235 * 69.93404 * 19 17 15 36 36 H 1.08005 * 119.93035 * 0.25682 * 21 20 19 37 37 H 1.07997 * 119.77268 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.98354 * 179.91704 * 23 22 21 39 39 H 1.07998 * 120.17029 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.60209 * 179.72200 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6966 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0952 1.6966 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0514 -1.2336 0.2763 9 6 1.3476 -2.4109 -0.3639 10 6 1.8257 -3.6654 0.0725 11 6 1.1527 -4.8043 -0.3054 12 7 0.0737 -4.7392 -1.0646 13 6 -0.4152 -3.5878 -1.5002 14 7 -1.5586 -3.5834 -2.2988 15 6 -2.1039 -4.7484 -2.7013 16 8 -1.6534 -5.7999 -2.2987 17 6 -3.2734 -4.7443 -3.6516 18 1 -3.0145 -4.1758 -4.5449 19 6 -4.4827 -4.1030 -2.9702 20 6 -5.7219 -4.3101 -3.8004 21 6 -6.8120 -3.4799 -3.6294 22 6 -7.9545 -3.6689 -4.3859 23 6 -8.0175 -4.6890 -5.3190 24 6 -6.9350 -5.5256 -5.5023 25 6 -5.7815 -5.3377 -4.7424 26 6 -4.6097 -6.2247 -4.9273 27 8 -4.5529 -7.0162 -5.8471 28 8 -3.6022 -6.1148 -4.0242 29 6 0.1980 -2.3877 -1.1767 30 1 -0.4850 0.8400 0.0004 31 1 2.7072 -3.7303 0.6933 32 1 1.5126 -5.7678 0.0242 33 1 -1.9636 -2.7420 -2.5613 34 1 -4.6260 -4.5557 -1.9890 35 1 -4.3041 -3.0345 -2.8490 36 1 -6.7724 -2.6811 -2.9035 37 1 -8.8037 -3.0164 -4.2469 38 1 -8.9140 -4.8303 -5.9045 39 1 -6.9817 -6.3221 -6.2301 40 1 -0.2013 -1.4514 -1.5377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763909579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:37 Heat of formation + Delta-G solvation = -44.267288 kcal Electronic energy + Delta-G solvation = -27648.270569 eV Core-core repulsion = 23586.342945 eV Total energy + Delta-G solvation = -4061.927623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30011 -39.70068 -38.71464 -38.08870 -37.01542 -34.50219 -34.01290 -33.37732 -31.58735 -30.73251 -30.32078 -28.40888 -26.09273 -25.37630 -24.61768 -22.29006 -22.15698 -21.89348 -20.39338 -19.76861 -18.47061 -17.77713 -17.65486 -16.86361 -16.41763 -15.81400 -15.62376 -15.36464 -15.21568 -14.80234 -14.64939 -14.37922 -14.29788 -14.08310 -13.90017 -13.49982 -13.37733 -12.90652 -12.67117 -12.64372 -12.41296 -12.24860 -12.06214 -11.59112 -11.51927 -11.29358 -11.01214 -10.94279 -10.45968 -10.35472 -10.24773 -9.89104 -9.50354 -9.45560 -9.42894 -9.21449 -8.10440 -7.82785 -7.16922 -6.90930 -4.69687 0.26271 0.87317 1.92459 2.37326 2.63277 2.72560 2.95175 2.98211 3.06381 3.27052 3.30287 3.45451 3.77856 3.87732 4.11835 4.18111 4.45536 4.54918 4.57929 4.64511 4.77875 4.87342 5.00612 5.09601 5.26240 5.45314 5.56572 5.59437 5.81108 5.87579 5.88060 5.97751 6.39354 6.44742 6.50205 6.69401 6.73384 6.84908 7.00568 7.19616 7.27441 7.34222 7.62579 7.80186 8.07371 8.30296 8.56761 8.64833 8.70419 9.58207 9.96832 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.002705 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.205698 B =10348.631459 C =11762.671494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.143 3.857 10 C -0.282 4.282 11 C 0.121 3.879 12 N -0.557 5.557 13 C 0.337 3.663 14 N -0.651 5.651 15 C 0.504 3.496 16 O -0.446 6.446 17 C 0.086 3.914 18 H 0.107 0.893 19 C -0.115 4.115 20 C -0.033 4.033 21 C -0.125 4.125 22 C -0.081 4.081 23 C -0.135 4.135 24 C -0.049 4.049 25 C -0.175 4.175 26 C 0.529 3.471 27 O -0.446 6.446 28 O -0.328 6.328 29 C -0.241 4.241 30 H 0.283 0.717 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.409 0.591 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 1.332 -7.909 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.306 4.306 11 C -0.033 4.033 12 N -0.276 5.276 13 C 0.113 3.887 14 N -0.299 5.299 15 C 0.285 3.715 16 O -0.313 6.313 17 C 0.027 3.973 18 H 0.124 0.876 19 C -0.152 4.152 20 C -0.033 4.033 21 C -0.143 4.143 22 C -0.099 4.099 23 C -0.153 4.153 24 C -0.067 4.067 25 C -0.176 4.176 26 C 0.370 3.630 27 O -0.328 6.328 28 O -0.246 6.246 29 C -0.266 4.266 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.244 0.756 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.855 -0.684 -8.251 17.887 hybrid contribution 0.358 2.189 0.190 2.227 sum -15.497 1.506 -8.061 17.533 Atomic orbital electron populations 1.69762 1.07709 1.29579 1.34159 1.25956 0.94783 1.01521 0.91757 0.86304 0.80172 0.79738 0.80206 1.18666 1.20218 1.18831 1.19561 0.98087 0.90726 1.40099 0.89907 1.17556 0.89808 0.92295 0.86833 1.21913 1.05258 0.93807 1.09613 1.21766 0.90848 0.96955 0.93708 1.67189 1.15844 1.26397 1.18170 1.18084 0.87034 0.91033 0.92597 1.43217 1.27601 1.08186 1.50880 1.19703 0.83947 0.85236 0.82593 1.90862 1.58808 1.29998 1.51643 1.22709 0.94814 0.80594 0.99228 0.87565 1.21166 0.90407 1.03577 1.00091 1.19922 0.95740 0.93828 0.93843 1.21064 0.92643 0.99955 1.00633 1.21431 0.97641 0.96666 0.94153 1.21223 0.98817 0.95829 0.99406 1.21278 0.91163 0.97963 0.96338 1.20124 0.96439 0.99458 1.01627 1.20985 0.82134 0.81445 0.78451 1.90806 1.80810 1.36286 1.24891 1.87111 1.52610 1.27701 1.57151 1.21502 1.02468 0.95429 1.07244 0.90615 0.87855 0.85731 0.75616 0.87361 0.86979 0.84594 0.85088 0.84942 0.84364 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.21 10.94 55.55 0.61 -17.60 16 2 C 0.08 1.82 5.19 -17.34 -0.09 1.73 16 3 Si 0.91 17.07 29.59 -169.99 -5.03 12.04 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 7 C -0.45 -11.17 9.12 -37.65 -0.34 -11.52 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.14 3.61 5.60 -106.55 -0.60 3.02 16 10 C -0.28 -6.70 9.90 -38.71 -0.38 -7.09 16 11 C 0.12 2.84 11.15 -17.68 -0.20 2.64 16 12 N -0.56 -13.82 7.85 -12.52 -0.10 -13.92 16 13 C 0.34 7.72 7.42 -154.71 -1.15 6.58 16 14 N -0.65 -11.57 5.36 -11.49 -0.06 -11.63 16 15 C 0.50 9.07 7.11 -10.99 -0.08 8.99 16 16 O -0.45 -10.37 14.77 -13.97 -0.21 -10.57 16 17 C 0.09 1.14 3.16 -27.93 -0.09 1.05 16 18 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.12 -1.14 5.28 -27.98 -0.15 -1.29 16 20 C -0.03 -0.32 5.80 -104.25 -0.60 -0.92 16 21 C -0.13 -0.93 9.71 -39.61 -0.38 -1.32 16 22 C -0.08 -0.53 10.03 -39.49 -0.40 -0.92 16 23 C -0.13 -0.95 10.04 -39.60 -0.40 -1.35 16 24 C -0.05 -0.46 9.64 -39.22 -0.38 -0.84 16 25 C -0.17 -1.99 5.83 -104.92 -0.61 -2.60 16 26 C 0.53 7.80 7.83 34.79 0.27 8.07 16 27 O -0.45 -7.55 17.40 -19.08 -0.33 -7.88 16 28 O -0.33 -5.38 9.87 -50.18 -0.50 -5.88 16 29 C -0.24 -5.76 8.62 -38.48 -0.33 -6.09 16 30 H 0.28 5.90 8.29 -40.82 -0.34 5.56 16 31 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 32 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 33 H 0.41 5.53 8.59 -40.82 -0.35 5.18 16 34 H 0.11 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.11 0.78 8.04 -51.93 -0.42 0.36 16 36 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.14 1.21 7.77 -52.49 -0.41 0.81 16 40 H 0.13 2.99 6.20 -52.49 -0.33 2.66 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -33.36 351.87 -10.23 -43.59 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.01 Total: 8.42 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -5.90 Total: -1.86 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.45 Total: -43.16 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.03 Total: -24.34 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.36 -10.23 -43.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763909579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.680 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds