Wall clock time and date at job start Tue Mar 31 2020 21:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86800 * 119.99559 * 2 1 4 4 H 1.48504 * 109.47394 * 239.99922 * 3 2 1 5 5 H 1.48504 * 109.47452 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47264 * 120.00078 * 3 2 1 7 7 C 1.40026 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00056 * 197.21800 * 7 2 1 9 9 C 1.41546 * 120.00064 * 17.21710 * 7 2 1 10 10 C 1.41170 * 120.99857 * 203.39861 * 9 7 2 11 11 C 1.37583 * 119.01823 * 180.02562 * 10 9 7 12 12 N 1.32088 * 121.10692 * 359.97438 * 11 10 9 13 13 C 1.32465 * 122.23183 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.57950 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99789 * 355.28808 * 14 13 12 16 16 O 1.21275 * 120.00289 * 4.80622 * 15 14 13 17 17 C 1.50695 * 119.99815 * 184.80768 * 15 14 13 18 18 H 1.09005 * 109.50349 * 54.92609 * 17 15 14 19 19 C 1.52909 * 109.50358 * 294.81320 * 17 15 14 20 20 C 1.50592 * 110.32566 * 190.19970 * 19 17 15 21 21 C 1.38090 * 119.90787 * 201.07093 * 20 19 17 22 22 C 1.38319 * 120.14248 * 180.24185 * 21 20 19 23 23 C 1.38394 * 120.46999 * 0.02562 * 22 21 20 24 24 C 1.38030 * 120.03867 * 359.88482 * 23 22 21 25 25 C 1.39403 * 119.65735 * 0.07279 * 24 23 22 26 26 C 1.48130 * 120.38490 * 180.09596 * 25 24 23 27 27 O 1.21473 * 121.44680 * 9.54422 * 26 25 24 28 28 O 1.35753 * 117.10222 * 189.55739 * 26 25 24 29 29 C 1.38596 * 120.83944 * 0.27518 * 13 12 11 30 30 H 0.96998 * 120.00334 * 359.97438 * 1 2 3 31 31 H 1.08007 * 120.49309 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.45042 * 179.97438 * 11 10 9 33 33 H 0.96996 * 120.00109 * 175.01584 * 14 13 12 34 34 H 1.09002 * 109.32522 * 310.45826 * 19 17 15 35 35 H 1.09002 * 109.33235 * 69.93404 * 19 17 15 36 36 H 1.08005 * 119.93035 * 0.25682 * 21 20 19 37 37 H 1.07997 * 119.77268 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.98354 * 179.91704 * 23 22 21 39 39 H 1.07998 * 120.17029 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.60209 * 179.72200 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6966 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0952 1.6966 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0514 -1.2336 0.2763 9 6 1.3476 -2.4109 -0.3639 10 6 1.8257 -3.6654 0.0725 11 6 1.1527 -4.8043 -0.3054 12 7 0.0737 -4.7392 -1.0646 13 6 -0.4152 -3.5878 -1.5002 14 7 -1.5586 -3.5834 -2.2988 15 6 -2.1039 -4.7484 -2.7013 16 8 -1.6534 -5.7999 -2.2987 17 6 -3.2734 -4.7443 -3.6516 18 1 -3.0145 -4.1758 -4.5449 19 6 -4.4827 -4.1030 -2.9702 20 6 -5.7219 -4.3101 -3.8004 21 6 -6.8120 -3.4799 -3.6294 22 6 -7.9545 -3.6689 -4.3859 23 6 -8.0175 -4.6890 -5.3190 24 6 -6.9350 -5.5256 -5.5023 25 6 -5.7815 -5.3377 -4.7424 26 6 -4.6097 -6.2247 -4.9273 27 8 -4.5529 -7.0162 -5.8471 28 8 -3.6022 -6.1148 -4.0242 29 6 0.1980 -2.3877 -1.1767 30 1 -0.4850 0.8400 0.0004 31 1 2.7072 -3.7303 0.6933 32 1 1.5126 -5.7678 0.0242 33 1 -1.9636 -2.7420 -2.5613 34 1 -4.6260 -4.5557 -1.9890 35 1 -4.3041 -3.0345 -2.8490 36 1 -6.7724 -2.6811 -2.9035 37 1 -8.8037 -3.0164 -4.2469 38 1 -8.9140 -4.8303 -5.9045 39 1 -6.9817 -6.3221 -6.2301 40 1 -0.2013 -1.4514 -1.5377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763909579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:36 Heat of formation + Delta-G solvation = -63.086355 kcal Electronic energy + Delta-G solvation = -27649.086625 eV Core-core repulsion = 23586.342945 eV Total energy + Delta-G solvation = -4062.743679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.33902 -41.19063 -39.71017 -39.52386 -38.30372 -36.18435 -35.65103 -34.31780 -32.49255 -32.26261 -31.50587 -29.91664 -27.91519 -26.35188 -25.44383 -23.91970 -23.59621 -22.86816 -21.74970 -20.94282 -19.64018 -19.23986 -19.03820 -17.93517 -17.56973 -17.17726 -17.01123 -16.64013 -16.28180 -16.07491 -15.94281 -15.76768 -15.53292 -15.27422 -15.03683 -14.66734 -14.61876 -14.32246 -14.16009 -13.98566 -13.55948 -13.19116 -13.05196 -12.92299 -12.84287 -12.64501 -12.21773 -12.13021 -12.05407 -11.93590 -11.56652 -11.50957 -11.14808 -10.96584 -10.12098 -9.96142 -9.84169 -9.62788 -8.92608 -8.64965 -6.55131 -0.53034 0.27509 0.67439 0.94653 1.00361 1.44252 1.48421 1.51418 1.55165 1.71218 2.21880 2.24013 2.63231 2.79767 2.95903 3.15375 3.25811 3.64814 3.66590 3.76061 3.80860 4.14795 4.17770 4.29498 4.35945 4.45879 4.56231 4.71369 4.77832 4.81936 4.91902 4.96244 5.06657 5.17966 5.23263 5.29580 5.41805 5.46447 5.56987 5.65086 5.84493 5.90342 6.10043 6.13538 6.41026 6.53638 6.78214 6.83298 7.12966 7.80513 8.26534 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.002705 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.205698 B =10348.631459 C =11762.671494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.044 3.956 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.483 4.483 8 H 0.082 0.918 9 C 0.114 3.886 10 C -0.297 4.297 11 C 0.113 3.887 12 N -0.586 5.586 13 C 0.334 3.666 14 N -0.636 5.636 15 C 0.506 3.494 16 O -0.505 6.505 17 C 0.094 3.906 18 H 0.137 0.863 19 C -0.108 4.108 20 C -0.038 4.038 21 C -0.121 4.121 22 C -0.069 4.069 23 C -0.129 4.129 24 C -0.060 4.060 25 C -0.198 4.198 26 C 0.528 3.472 27 O -0.486 6.486 28 O -0.366 6.366 29 C -0.253 4.253 30 H 0.295 0.705 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.429 0.571 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.134 0.866 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.128 4.628 -8.182 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.174 4.174 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.513 4.513 8 H 0.100 0.900 9 C 0.105 3.895 10 C -0.321 4.321 11 C -0.040 4.040 12 N -0.306 5.306 13 C 0.109 3.891 14 N -0.286 5.286 15 C 0.290 3.710 16 O -0.376 6.376 17 C 0.036 3.964 18 H 0.154 0.846 19 C -0.145 4.145 20 C -0.039 4.039 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.147 4.147 24 C -0.078 4.078 25 C -0.200 4.200 26 C 0.372 3.628 27 O -0.371 6.371 28 O -0.285 6.285 29 C -0.278 4.278 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.163 0.837 33 H 0.268 0.732 34 H 0.117 0.883 35 H 0.166 0.834 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.179 0.821 39 H 0.152 0.848 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.368 2.645 -8.531 20.425 hybrid contribution 1.039 1.171 0.298 1.594 sum -17.329 3.817 -8.233 19.561 Atomic orbital electron populations 1.69768 1.08823 1.31265 1.33026 1.26743 0.95609 1.04292 0.90784 0.85209 0.78870 0.75466 0.79946 1.18626 1.18668 1.18759 1.19833 0.98394 0.91740 1.41345 0.89956 1.17990 0.90766 0.93154 0.87563 1.22081 1.05959 0.93734 1.10286 1.22154 0.90615 0.97919 0.93325 1.67311 1.16677 1.27413 1.19200 1.18321 0.88025 0.90364 0.92426 1.43111 1.26202 1.09511 1.49749 1.20486 0.84292 0.84135 0.82094 1.90832 1.60893 1.31967 1.53919 1.22766 0.94269 0.80031 0.99325 0.84561 1.21195 0.89025 1.05109 0.99169 1.19901 0.96376 0.94025 0.93549 1.21402 0.91855 0.99744 1.00891 1.21906 0.98163 0.96101 0.92450 1.21581 0.98716 0.94972 0.99441 1.21414 0.91460 0.98699 0.96273 1.19965 0.95720 1.00191 1.04081 1.21534 0.82589 0.81299 0.77357 1.90764 1.81478 1.38270 1.26551 1.87025 1.54006 1.29750 1.57686 1.21501 1.02778 0.95746 1.07820 0.89380 0.86722 0.83656 0.73165 0.88280 0.83363 0.81844 0.81523 0.82096 0.84806 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.35 10.94 21.84 0.24 -36.11 16 2 C 0.04 1.98 5.19 85.29 0.44 2.42 16 3 Si 0.98 33.79 29.59 68.60 2.03 35.82 16 4 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 5 H -0.26 -8.33 7.11 99.48 0.71 -7.63 16 6 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 7 C -0.48 -23.96 9.12 23.52 0.21 -23.74 16 8 H 0.08 3.94 7.90 -2.91 -0.02 3.92 16 9 C 0.11 5.84 5.60 -21.11 -0.12 5.72 16 10 C -0.30 -14.48 9.90 22.84 0.23 -14.25 16 11 C 0.11 5.45 11.15 84.50 0.94 6.39 16 12 N -0.59 -29.92 7.85 -193.54 -1.52 -31.44 16 13 C 0.33 15.57 7.42 132.75 0.98 16.56 16 14 N -0.64 -22.50 5.36 -308.67 -1.65 -24.16 16 15 C 0.51 18.46 7.11 87.66 0.62 19.09 16 16 O -0.51 -24.47 14.77 15.66 0.23 -24.24 16 17 C 0.09 2.47 3.16 29.82 0.09 2.57 16 18 H 0.14 2.72 8.14 -2.38 -0.02 2.70 16 19 C -0.11 -1.93 5.28 29.78 0.16 -1.78 16 20 C -0.04 -0.65 5.80 -19.62 -0.11 -0.76 16 21 C -0.12 -1.28 9.71 22.25 0.22 -1.07 16 22 C -0.07 -0.56 10.03 22.33 0.22 -0.33 16 23 C -0.13 -1.36 10.04 22.26 0.22 -1.14 16 24 C -0.06 -1.06 9.64 22.50 0.22 -0.84 16 25 C -0.20 -4.37 5.83 -20.06 -0.12 -4.49 16 26 C 0.53 16.22 7.83 70.45 0.55 16.78 16 27 O -0.49 -17.49 17.40 19.77 0.34 -17.15 16 28 O -0.37 -12.54 9.87 -60.94 -0.60 -13.14 16 29 C -0.25 -12.25 8.62 22.98 0.20 -12.05 16 30 H 0.30 11.76 8.29 -92.71 -0.77 10.99 16 31 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 32 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 33 H 0.43 11.01 8.59 -92.71 -0.80 10.21 16 34 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.15 1.51 8.04 -2.39 -0.02 1.49 16 36 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 37 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 38 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.13 2.36 7.77 -2.91 -0.02 2.34 16 40 H 0.13 6.11 6.20 -2.91 -0.02 6.10 16 Total: -1.00 -77.12 351.87 4.35 -72.76 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.32 Total: 28.57 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.97 Total: 9.08 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -2.93 Total: -91.71 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -0.03 Total: -54.53 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Total: -77.12 4.35 -72.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763909579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.676 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds