Wall clock time and date at job start Tue Mar 31 2020 21:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42102 * 108.57597 * 2 1 4 4 O 1.42095 * 108.58056 * 228.97410 * 2 1 3 5 5 C 1.81403 * 101.92338 * 114.48323 * 2 1 3 6 6 C 1.52993 * 109.47041 * 175.51504 * 5 2 1 7 7 C 1.52999 * 115.54889 * 275.28079 * 6 5 2 8 8 O 1.45204 * 109.47389 * 294.64602 * 7 6 5 9 9 C 1.34698 * 117.00145 * 179.97438 * 8 7 6 10 10 O 1.21472 * 120.00124 * 0.02562 * 9 8 7 11 11 C 1.47775 * 120.00009 * 180.02562 * 9 8 7 12 12 C 1.39965 * 120.02930 * 359.72591 * 11 9 8 13 13 C 1.38316 * 120.34953 * 179.76468 * 12 11 9 14 14 C 1.37755 * 120.41959 * 0.51108 * 13 12 11 15 15 C 1.40756 * 120.05261 * 359.74734 * 14 13 12 16 16 C 1.41431 * 120.17759 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00074 * 335.69123 * 16 15 14 18 18 C 1.39933 * 120.00397 * 155.69503 * 16 15 14 19 19 N 1.30825 * 119.99679 * 341.39352 * 18 16 15 20 20 Si 1.86798 * 120.00502 * 161.38613 * 18 16 15 21 21 H 1.48500 * 109.46963 * 60.00220 * 20 18 16 22 22 H 1.48500 * 109.47634 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47266 * 300.00357 * 20 18 16 24 24 C 1.39045 * 120.02747 * 180.02562 * 11 9 8 25 25 C 1.53001 * 117.49701 * 129.57555 * 6 5 2 26 26 C 1.52996 * 59.99937 * 252.50571 * 25 6 5 27 27 H 1.08999 * 109.47546 * 305.51439 * 1 2 3 28 28 H 1.09000 * 109.47316 * 65.51694 * 1 2 3 29 29 H 1.09007 * 109.46903 * 185.51246 * 1 2 3 30 30 H 1.08998 * 109.47067 * 295.51804 * 5 2 1 31 31 H 1.08998 * 109.46807 * 55.51453 * 5 2 1 32 32 H 1.08998 * 109.47436 * 54.65054 * 7 6 5 33 33 H 1.09007 * 109.47026 * 174.64703 * 7 6 5 34 34 H 1.08003 * 119.82278 * 359.97438 * 12 11 9 35 35 H 1.08000 * 119.78602 * 180.25979 * 13 12 11 36 36 H 1.07997 * 119.97660 * 179.76382 * 14 13 12 37 37 H 0.97007 * 120.00448 * 179.97438 * 19 18 16 38 38 H 1.07998 * 120.21243 * 359.95284 * 24 11 9 39 39 H 1.08996 * 117.50024 * 0.02562 * 25 6 5 40 40 H 1.09001 * 117.49966 * 145.01565 * 25 6 5 41 41 H 1.08995 * 117.49981 * 252.50946 * 26 25 6 42 42 H 1.09006 * 117.49365 * 107.48839 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1888 -0.7356 1.6153 6 6 3.7011 -0.9219 1.7523 7 6 4.2648 -2.2094 1.1477 8 8 3.7479 -3.3535 1.8772 9 6 4.1499 -4.5722 1.4679 10 8 4.9117 -4.6764 0.5275 11 6 3.6641 -5.7825 2.1629 12 6 2.7908 -5.6629 3.2501 13 6 2.3281 -6.7915 3.9023 14 6 2.7293 -8.0453 3.4965 15 6 3.6113 -8.1854 2.4086 16 6 4.0245 -9.4714 1.9894 17 1 4.0091 -10.2972 2.6855 18 6 4.4534 -9.6741 0.6729 19 7 4.1425 -8.8079 -0.2569 20 14 5.4700 -11.1811 0.2432 21 1 4.6955 -12.4077 0.5609 22 1 5.7955 -11.1621 -1.2056 23 1 6.7277 -11.1715 1.0328 24 6 4.0790 -7.0408 1.7411 25 6 4.3668 -0.3864 3.0216 26 6 4.5762 0.3314 1.6868 27 1 -0.3634 0.5970 0.8365 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3633 -1.0230 0.0987 30 1 1.8307 -0.0768 2.4064 31 1 1.6945 -1.7036 1.6971 32 1 3.9666 -2.2805 0.1017 33 1 5.3527 -2.1966 1.2153 34 1 2.4738 -4.6843 3.5793 35 1 1.6512 -6.6888 4.7376 36 1 2.3666 -8.9214 4.0134 37 1 4.4400 -8.9481 -1.1695 38 1 4.7560 -7.1379 0.9053 39 1 3.7272 0.0982 3.7592 40 1 5.2064 -0.9515 3.4263 41 1 5.5535 0.2387 1.2134 42 1 4.0743 1.2888 1.5462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767580526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:09 Heat of formation + Delta-G solvation = -133.991874 kcal Electronic energy + Delta-G solvation = -26744.368243 eV Core-core repulsion = 22781.701070 eV Total energy + Delta-G solvation = -3962.667173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53881 -39.60628 -38.92613 -37.98995 -37.13974 -36.96851 -35.62076 -32.28221 -31.37197 -30.86976 -29.95700 -28.60208 -27.21850 -24.78837 -23.48340 -22.85192 -21.52174 -20.91664 -19.75422 -19.63685 -18.23729 -17.88350 -17.63973 -17.34670 -17.15624 -16.88847 -16.65602 -16.46469 -16.01697 -15.45576 -15.22830 -14.91471 -14.38489 -14.31905 -14.06257 -13.97847 -13.93530 -13.69371 -13.51603 -13.22105 -13.01689 -12.99516 -12.89339 -12.83355 -12.56412 -12.44829 -12.28557 -12.22460 -12.06720 -11.88712 -11.83288 -11.55983 -11.52484 -11.22667 -11.08159 -10.64747 -9.62158 -9.44978 -8.69966 -6.40141 -0.94388 0.12329 0.97197 1.36793 1.46640 1.50499 1.51290 1.79075 1.86008 2.18171 2.64700 2.70778 2.74242 3.08833 3.37442 3.46509 3.49611 3.62984 3.84042 4.02335 4.08374 4.14261 4.23805 4.36671 4.42858 4.46805 4.58663 4.64099 4.72928 4.84990 4.93328 4.96620 4.98904 5.04650 5.13431 5.16500 5.24667 5.27551 5.44289 5.81969 5.89118 6.00841 6.23171 6.52534 6.78785 6.85602 6.89033 8.27363 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.002710 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.882119 B =10330.560263 C =10612.548892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.407 3.593 3 O -0.969 6.969 4 O -0.993 6.993 5 C -0.562 4.562 6 C -0.148 4.148 7 C 0.083 3.917 8 O -0.336 6.336 9 C 0.511 3.489 10 O -0.550 6.550 11 C -0.128 4.128 12 C -0.179 4.179 13 C -0.097 4.097 14 C -0.204 4.204 15 C 0.067 3.933 16 C -0.495 4.495 17 H 0.089 0.911 18 C 0.030 3.970 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.251 1.251 22 H -0.274 1.274 23 H -0.260 1.260 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.173 4.173 27 H 0.162 0.838 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.180 0.820 31 H 0.149 0.851 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.287 0.713 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 18.084 6.411 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.595 3.405 3 O -0.966 6.966 4 O -0.990 6.990 5 C -0.692 4.692 6 C -0.149 4.149 7 C 0.009 3.991 8 O -0.253 6.253 9 C 0.359 3.641 10 O -0.442 6.442 11 C -0.129 4.129 12 C -0.198 4.198 13 C -0.114 4.114 14 C -0.224 4.224 15 C 0.065 3.935 16 C -0.524 4.524 17 H 0.107 0.893 18 C -0.185 4.185 19 N -0.451 5.451 20 Si 0.803 3.197 21 H -0.175 1.175 22 H -0.199 1.199 23 H -0.185 1.185 24 C -0.146 4.146 25 C -0.168 4.168 26 C -0.210 4.210 27 H 0.181 0.819 28 H 0.155 0.845 29 H 0.163 0.837 30 H 0.198 0.802 31 H 0.168 0.832 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.508 18.453 5.184 20.242 hybrid contribution 0.271 -1.147 -0.517 1.287 sum -6.236 17.306 4.668 18.978 Atomic orbital electron populations 1.30123 1.21816 1.13666 1.13729 1.07943 0.80154 0.74667 0.77707 1.93527 1.80743 1.35359 1.86989 1.93564 1.81060 1.67769 1.56628 1.29843 1.00407 1.15824 1.23104 1.20785 0.92183 0.93300 1.08673 1.22769 0.98727 0.82000 0.95598 1.86507 1.67152 1.14103 1.57495 1.21826 0.77211 0.84171 0.80848 1.90757 1.36033 1.87797 1.29597 1.19069 1.04485 0.89140 1.00183 1.20969 1.02135 0.99362 0.97322 1.20973 0.99424 0.91562 0.99490 1.21508 1.01542 0.97613 1.01691 1.17881 0.90522 0.93092 0.92033 1.19847 1.40239 0.95671 0.96667 0.89330 1.26866 0.94783 1.01161 0.95682 1.69873 1.35392 1.36844 1.03008 0.85235 0.79030 0.77708 0.77707 1.17456 1.19854 1.18475 1.21455 1.01196 0.90727 1.01268 1.23259 1.02483 1.00899 0.90141 1.23632 1.01105 0.94572 1.01717 0.81930 0.84482 0.83713 0.80220 0.83250 0.91306 0.90858 0.84448 0.83852 0.86642 0.90196 0.88032 0.84886 0.88190 0.87549 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.08 10.62 113.37 1.20 -3.87 16 2 S 2.41 42.24 5.17 -56.49 -0.29 41.94 16 3 O -0.97 -21.14 16.51 -127.37 -2.10 -23.25 16 4 O -0.99 -29.24 17.04 -127.37 -2.17 -31.41 16 5 C -0.56 -8.14 5.77 71.98 0.42 -7.73 16 6 C -0.15 -3.15 1.80 -52.18 -0.09 -3.25 16 7 C 0.08 2.61 5.29 71.98 0.38 2.99 16 8 O -0.34 -12.25 9.21 -56.08 -0.52 -12.77 16 9 C 0.51 23.69 7.90 70.34 0.56 24.24 16 10 O -0.55 -29.00 16.12 19.93 0.32 -28.68 16 11 C -0.13 -6.16 5.87 -20.14 -0.12 -6.28 16 12 C -0.18 -7.20 9.62 22.71 0.22 -6.98 16 13 C -0.10 -3.74 10.01 22.17 0.22 -3.52 16 14 C -0.20 -9.21 9.78 22.77 0.22 -8.99 16 15 C 0.07 3.57 5.57 -21.32 -0.12 3.45 16 16 C -0.50 -26.34 9.05 23.47 0.21 -26.13 16 17 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 18 C 0.03 1.56 5.12 85.25 0.44 2.00 16 19 N -0.83 -45.68 10.99 21.82 0.24 -45.44 16 20 Si 0.98 39.04 29.60 68.60 2.03 41.07 16 21 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 C -0.13 -6.98 8.24 23.02 0.19 -6.79 16 25 C -0.13 -2.08 9.90 30.59 0.30 -1.78 16 26 C -0.17 -3.09 9.35 30.59 0.29 -2.80 16 27 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.18 0.93 7.91 -2.39 -0.02 0.91 16 31 H 0.15 2.10 7.87 -2.39 -0.02 2.08 16 32 H 0.07 2.45 7.06 -2.39 -0.02 2.44 16 33 H 0.07 2.29 8.09 -2.38 -0.02 2.27 16 34 H 0.14 4.56 7.59 -2.91 -0.02 4.54 16 35 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.29 14.73 8.30 -92.70 -0.77 13.97 16 38 H 0.10 6.21 5.75 -2.91 -0.02 6.19 16 39 H 0.13 1.34 8.05 -2.39 -0.02 1.32 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.13 2.10 6.87 -2.38 -0.02 2.08 16 Total: -1.00 -80.08 372.07 2.86 -77.22 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 1.04 Total: 26.76 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.32 Total: -45.46 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.24 Total: -45.44 kcal Atomic # 8 Polarization: -91.63 SS G_CDS: -4.47 Total: -96.10 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Atomic # 16 Polarization: 42.24 SS G_CDS: -0.29 Total: 41.94 kcal Total: -80.08 2.86 -77.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767580526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.774 kcal (2) G-P(sol) polarization free energy of solvation -80.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds