Wall clock time and date at job start Tue Mar 31 2020 21:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42101 * 108.57661 * 2 1 4 4 O 1.42101 * 108.58012 * 228.97238 * 2 1 3 5 5 C 1.81406 * 101.92014 * 114.48394 * 2 1 3 6 6 C 1.53002 * 109.46999 * 179.97438 * 5 2 1 7 7 C 1.52998 * 115.55015 * 66.95497 * 6 5 2 8 8 O 1.45195 * 109.47366 * 40.25982 * 7 6 5 9 9 C 1.34781 * 117.00235 * 179.97438 * 8 7 6 10 10 O 1.21510 * 119.99679 * 0.02562 * 9 8 7 11 11 C 1.47505 * 119.99965 * 179.97438 * 9 8 7 12 12 C 1.40064 * 119.89973 * 179.97438 * 11 9 8 13 13 C 1.36297 * 120.10268 * 180.27267 * 12 11 9 14 14 C 1.40903 * 119.89621 * 359.52678 * 13 12 11 15 15 C 1.41095 * 120.09769 * 180.22485 * 14 13 12 16 16 H 1.08003 * 119.99597 * 202.54204 * 15 14 13 17 17 C 1.40234 * 119.99884 * 22.55302 * 15 14 13 18 18 N 1.30633 * 120.00777 * 31.61505 * 17 15 14 19 19 Si 1.86806 * 119.99719 * 211.61645 * 17 15 14 20 20 H 1.48503 * 109.47113 * 94.98480 * 19 17 15 21 21 H 1.48504 * 109.47076 * 214.98453 * 19 17 15 22 22 H 1.48495 * 109.47277 * 334.98369 * 19 17 15 23 23 C 1.40900 * 119.80192 * 0.47600 * 14 13 12 24 24 C 1.36302 * 119.89748 * 359.75131 * 23 14 13 25 25 C 1.52991 * 117.51769 * 212.65925 * 6 5 2 26 26 C 1.52994 * 60.00393 * 107.47870 * 25 6 5 27 27 H 1.09006 * 109.47052 * 305.51456 * 1 2 3 28 28 H 1.08997 * 109.46730 * 65.51104 * 1 2 3 29 29 H 1.08998 * 109.46914 * 185.51470 * 1 2 3 30 30 H 1.08999 * 109.46944 * 59.92153 * 5 2 1 31 31 H 1.08997 * 109.47033 * 299.92247 * 5 2 1 32 32 H 1.09006 * 109.46990 * 280.25389 * 7 6 5 33 33 H 1.09007 * 109.47144 * 160.26172 * 7 6 5 34 34 H 1.07997 * 119.94929 * 0.02562 * 12 11 9 35 35 H 1.08004 * 120.05317 * 179.75090 * 13 12 11 36 36 H 0.96992 * 120.00834 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.04947 * 179.73252 * 23 14 13 38 38 H 1.07995 * 119.95248 * 179.97438 * 24 23 14 39 39 H 1.09004 * 117.50082 * 214.97234 * 25 6 5 40 40 H 1.09006 * 117.50152 * 359.97438 * 25 6 5 41 41 H 1.09000 * 117.49887 * 252.51155 * 26 25 6 42 42 H 1.08999 * 117.50157 * 107.49100 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 6 4.4312 0.5223 1.9156 8 8 3.6430 1.4291 2.7309 9 6 4.1458 2.6629 2.9344 10 8 5.2133 2.9725 2.4435 11 6 3.3995 3.6378 3.7521 12 6 3.9242 4.9192 3.9626 13 6 3.2408 5.8214 4.7221 14 6 1.9999 5.4665 5.2874 15 6 1.2866 6.3987 6.0704 16 1 0.5552 6.0547 6.7867 17 6 1.5272 7.7719 5.9182 18 7 1.8759 8.2489 4.7531 19 14 1.3490 8.9191 7.3817 20 1 2.6754 9.1177 8.0193 21 1 0.8194 10.2283 6.9227 22 1 0.4107 8.3233 8.3664 23 6 1.4760 4.1762 5.0730 24 6 2.1686 3.2790 4.3160 25 6 4.2558 -1.9938 2.6097 26 6 4.4401 -1.9605 1.0912 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4260 -0.9352 29 1 -0.3633 -1.0229 0.0988 30 1 1.7598 -1.7363 1.6671 31 1 1.7622 -0.1162 2.4043 32 1 4.5661 0.9506 0.9223 33 1 5.4052 0.3691 2.3805 34 1 4.8736 5.1916 3.5259 35 1 3.6480 6.8080 4.8872 36 1 2.0427 9.1985 4.6480 37 1 0.5273 3.8986 5.5080 38 1 1.7681 2.2896 4.1514 39 1 5.1349 -1.8105 3.2276 40 1 3.5372 -2.7068 3.0141 41 1 3.8428 -2.6515 0.4965 42 1 5.4404 -1.7552 0.7100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767721224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:14 Heat of formation + Delta-G solvation = -116.339451 kcal Electronic energy + Delta-G solvation = -26910.423107 eV Core-core repulsion = 22948.521400 eV Total energy + Delta-G solvation = -3961.901706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.70351 -38.34583 -37.29323 -36.96725 -35.99245 -35.28955 -33.99607 -30.37310 -30.13180 -29.64094 -29.21618 -27.47384 -25.79899 -22.76007 -22.27357 -21.08322 -19.92271 -19.80922 -18.80983 -17.61080 -16.93847 -16.80106 -16.66044 -16.06713 -15.73979 -15.58575 -15.43145 -14.97841 -14.42926 -14.03949 -13.52394 -13.45918 -13.36492 -13.13372 -13.05674 -12.91109 -12.65832 -12.19905 -12.07812 -11.99933 -11.95760 -11.81104 -11.62114 -11.47142 -11.34728 -11.22585 -11.03655 -10.98657 -10.72839 -10.66760 -10.26811 -10.16057 -9.67501 -9.56274 -9.39111 -9.28627 -7.76139 -7.70360 -7.21620 -4.64717 -0.11904 2.12344 2.65457 2.84523 2.93147 2.95506 3.03164 3.12411 3.51610 3.60067 3.67191 3.70336 3.90124 4.23739 4.38846 4.41638 4.56371 4.61488 4.65893 4.77847 5.05218 5.37540 5.41951 5.46024 5.47810 5.52030 5.64255 5.65876 5.73018 5.86734 6.06991 6.21061 6.26377 6.71439 6.79017 6.97134 7.04612 7.17716 7.40275 7.62929 7.75818 7.88551 7.98295 8.32775 8.54428 8.69701 8.83155 9.71532 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.002745 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.032735 B =10197.215897 C =10768.746143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.412 3.588 3 O -0.919 6.919 4 O -0.943 6.943 5 C -0.566 4.566 6 C -0.124 4.124 7 C 0.094 3.906 8 O -0.355 6.355 9 C 0.520 3.480 10 O -0.550 6.550 11 C -0.277 4.277 12 C -0.026 4.026 13 C -0.196 4.196 14 C 0.133 3.867 15 C -0.441 4.441 16 H 0.090 0.910 17 C 0.083 3.917 18 N -0.743 5.743 19 Si 0.907 3.093 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.244 4.244 24 C -0.024 4.024 25 C -0.151 4.151 26 C -0.163 4.163 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.291 0.709 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.731 -15.786 -3.898 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.594 3.406 3 O -0.916 6.916 4 O -0.940 6.940 5 C -0.694 4.694 6 C -0.126 4.126 7 C 0.019 3.981 8 O -0.273 6.273 9 C 0.372 3.628 10 O -0.444 6.444 11 C -0.279 4.279 12 C -0.045 4.045 13 C -0.215 4.215 14 C 0.129 3.871 15 C -0.466 4.466 16 H 0.108 0.892 17 C -0.143 4.143 18 N -0.364 5.364 19 Si 0.729 3.271 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.180 1.180 23 C -0.263 4.263 24 C -0.043 4.043 25 C -0.189 4.189 26 C -0.200 4.200 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.836 -15.198 -4.883 16.069 hybrid contribution -0.670 0.323 1.064 1.298 sum -2.506 -14.876 -3.820 15.561 Atomic orbital electron populations 1.30313 1.27298 1.11201 1.12089 1.08164 0.78310 0.76379 0.77770 1.93687 1.78251 1.33641 1.86002 1.93569 1.79065 1.67357 1.54050 1.29792 1.01923 1.13735 1.23985 1.20812 0.90993 0.91301 1.09457 1.22362 0.93397 0.85994 0.96309 1.86480 1.50508 1.24541 1.65747 1.21480 0.83700 0.79697 0.77936 1.90695 1.23941 1.78649 1.51117 1.18138 1.00517 0.94462 1.14812 1.20400 0.97673 0.91416 0.94972 1.20723 0.96333 0.99263 1.05187 1.17756 0.90485 0.91509 0.87325 1.19885 1.18790 0.90303 1.17654 0.89196 1.26165 0.91945 0.99764 0.96454 1.69813 1.26716 1.16484 1.23377 0.86311 0.80196 0.78769 0.81794 1.18693 1.19905 1.17982 1.20635 1.01092 0.96129 1.08434 1.20485 0.92666 0.97184 0.93963 1.23167 1.03099 0.98694 0.93967 1.23297 1.02339 0.98812 0.95586 0.84928 0.85318 0.85696 0.85181 0.83344 0.90356 0.90750 0.88065 0.87212 0.89734 0.88334 0.88240 0.87844 0.88014 0.87032 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.76 10.62 101.05 1.07 -3.68 16 2 S 2.41 26.79 5.28 -107.50 -0.57 26.22 16 3 O -0.92 -15.13 16.71 -57.83 -0.97 -16.10 16 4 O -0.94 -12.39 18.06 -57.83 -1.04 -13.44 16 5 C -0.57 -5.32 5.39 37.16 0.20 -5.12 16 6 C -0.12 -1.44 1.93 -154.51 -0.30 -1.74 16 7 C 0.09 1.48 4.71 37.16 0.18 1.66 16 8 O -0.35 -6.73 8.46 -40.71 -0.34 -7.08 16 9 C 0.52 11.90 7.89 34.51 0.27 12.18 16 10 O -0.55 -13.63 16.11 -19.27 -0.31 -13.94 16 11 C -0.28 -6.63 5.89 -104.75 -0.62 -7.25 16 12 C -0.03 -0.64 9.52 -39.60 -0.38 -1.02 16 13 C -0.20 -4.97 8.73 -39.27 -0.34 -5.32 16 14 C 0.13 3.34 5.57 -106.80 -0.59 2.74 16 15 C -0.44 -10.70 8.95 -37.75 -0.34 -11.04 16 16 H 0.09 2.06 8.01 -52.48 -0.42 1.64 16 17 C 0.08 1.89 4.79 -17.31 -0.08 1.81 16 18 N -0.74 -17.73 11.75 55.56 0.65 -17.08 16 19 Si 0.91 16.77 29.66 -169.99 -5.04 11.73 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 21 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 23 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 24 C -0.02 -0.54 9.55 -39.59 -0.38 -0.92 16 25 C -0.15 -1.36 9.86 -26.74 -0.26 -1.63 16 26 C -0.16 -1.53 9.94 -26.73 -0.27 -1.80 16 27 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.12 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.13 0.71 8.08 -51.92 -0.42 0.29 16 31 H 0.15 1.38 7.51 -51.93 -0.39 0.99 16 32 H 0.08 1.33 7.46 -51.93 -0.39 0.94 16 33 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 34 H 0.10 2.44 7.63 -52.49 -0.40 2.04 16 35 H 0.11 2.79 6.52 -52.48 -0.34 2.45 16 36 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 37 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.10 1.90 7.59 -52.49 -0.40 1.50 16 39 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -33.69 374.45 -9.88 -43.58 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.68 Total: 7.61 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -2.22 Total: -27.14 kcal Atomic # 7 Polarization: -17.73 SS G_CDS: 0.65 Total: -17.08 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -2.67 Total: -50.56 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.04 Total: 11.73 kcal Atomic # 16 Polarization: 26.79 SS G_CDS: -0.57 Total: 26.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.69 -9.88 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767721224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.762 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds