Wall clock time and date at job start Tue Mar 31 2020 21:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42101 * 108.57661 * 2 1 4 4 O 1.42101 * 108.58012 * 228.97238 * 2 1 3 5 5 C 1.81406 * 101.92014 * 114.48394 * 2 1 3 6 6 C 1.53002 * 109.46999 * 179.97438 * 5 2 1 7 7 C 1.52998 * 115.55015 * 66.95497 * 6 5 2 8 8 O 1.45195 * 109.47366 * 40.25982 * 7 6 5 9 9 C 1.34781 * 117.00235 * 179.97438 * 8 7 6 10 10 O 1.21510 * 119.99679 * 0.02562 * 9 8 7 11 11 C 1.47505 * 119.99965 * 179.97438 * 9 8 7 12 12 C 1.40064 * 119.89973 * 179.97438 * 11 9 8 13 13 C 1.36297 * 120.10268 * 180.27267 * 12 11 9 14 14 C 1.40903 * 119.89621 * 359.52678 * 13 12 11 15 15 C 1.41095 * 120.09769 * 180.22485 * 14 13 12 16 16 H 1.08003 * 119.99597 * 202.54204 * 15 14 13 17 17 C 1.40234 * 119.99884 * 22.55302 * 15 14 13 18 18 N 1.30633 * 120.00777 * 31.61505 * 17 15 14 19 19 Si 1.86806 * 119.99719 * 211.61645 * 17 15 14 20 20 H 1.48503 * 109.47113 * 94.98480 * 19 17 15 21 21 H 1.48504 * 109.47076 * 214.98453 * 19 17 15 22 22 H 1.48495 * 109.47277 * 334.98369 * 19 17 15 23 23 C 1.40900 * 119.80192 * 0.47600 * 14 13 12 24 24 C 1.36302 * 119.89748 * 359.75131 * 23 14 13 25 25 C 1.52991 * 117.51769 * 212.65925 * 6 5 2 26 26 C 1.52994 * 60.00393 * 107.47870 * 25 6 5 27 27 H 1.09006 * 109.47052 * 305.51456 * 1 2 3 28 28 H 1.08997 * 109.46730 * 65.51104 * 1 2 3 29 29 H 1.08998 * 109.46914 * 185.51470 * 1 2 3 30 30 H 1.08999 * 109.46944 * 59.92153 * 5 2 1 31 31 H 1.08997 * 109.47033 * 299.92247 * 5 2 1 32 32 H 1.09006 * 109.46990 * 280.25389 * 7 6 5 33 33 H 1.09007 * 109.47144 * 160.26172 * 7 6 5 34 34 H 1.07997 * 119.94929 * 0.02562 * 12 11 9 35 35 H 1.08004 * 120.05317 * 179.75090 * 13 12 11 36 36 H 0.96992 * 120.00834 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.04947 * 179.73252 * 23 14 13 38 38 H 1.07995 * 119.95248 * 179.97438 * 24 23 14 39 39 H 1.09004 * 117.50082 * 214.97234 * 25 6 5 40 40 H 1.09006 * 117.50152 * 359.97438 * 25 6 5 41 41 H 1.09000 * 117.49887 * 252.51155 * 26 25 6 42 42 H 1.08999 * 117.50157 * 107.49100 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 6 4.4312 0.5223 1.9156 8 8 3.6430 1.4291 2.7309 9 6 4.1458 2.6629 2.9344 10 8 5.2133 2.9725 2.4435 11 6 3.3995 3.6378 3.7521 12 6 3.9242 4.9192 3.9626 13 6 3.2408 5.8214 4.7221 14 6 1.9999 5.4665 5.2874 15 6 1.2866 6.3987 6.0704 16 1 0.5552 6.0547 6.7867 17 6 1.5272 7.7719 5.9182 18 7 1.8759 8.2489 4.7531 19 14 1.3490 8.9191 7.3817 20 1 2.6754 9.1177 8.0193 21 1 0.8194 10.2283 6.9227 22 1 0.4107 8.3233 8.3664 23 6 1.4760 4.1762 5.0730 24 6 2.1686 3.2790 4.3160 25 6 4.2558 -1.9938 2.6097 26 6 4.4401 -1.9605 1.0912 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4260 -0.9352 29 1 -0.3633 -1.0229 0.0988 30 1 1.7598 -1.7363 1.6671 31 1 1.7622 -0.1162 2.4043 32 1 4.5661 0.9506 0.9223 33 1 5.4052 0.3691 2.3805 34 1 4.8736 5.1916 3.5259 35 1 3.6480 6.8080 4.8872 36 1 2.0427 9.1985 4.6480 37 1 0.5273 3.8986 5.5080 38 1 1.7681 2.2896 4.1514 39 1 5.1349 -1.8105 3.2276 40 1 3.5372 -2.7068 3.0141 41 1 3.8428 -2.6515 0.4965 42 1 5.4404 -1.7552 0.7100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767721224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:13 Heat of formation + Delta-G solvation = -137.453603 kcal Electronic energy + Delta-G solvation = -26911.338685 eV Core-core repulsion = 22948.521400 eV Total energy + Delta-G solvation = -3962.817285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28674 -39.55900 -38.91117 -37.93113 -36.94963 -36.90517 -35.79597 -32.19565 -31.49036 -30.80659 -29.99579 -28.80315 -27.46729 -24.08928 -23.42157 -22.92156 -21.57270 -20.85609 -19.68688 -19.42751 -18.64340 -17.98432 -17.64160 -17.19046 -17.06465 -16.94193 -16.79318 -16.04220 -15.75886 -15.37844 -15.23313 -14.78534 -14.35849 -14.24186 -14.06444 -14.00128 -13.92457 -13.76774 -13.66485 -13.22922 -13.05212 -12.94746 -12.92685 -12.70566 -12.59148 -12.46306 -12.35823 -12.30905 -11.85889 -11.84155 -11.67443 -11.51646 -11.38214 -11.13861 -11.06344 -10.56589 -9.64727 -9.58084 -8.96976 -6.51368 -0.90117 0.29409 1.15452 1.33811 1.41606 1.54837 1.78240 1.91032 1.92146 2.12853 2.61690 2.67769 2.77281 3.13943 3.44305 3.55099 3.59598 3.62495 3.88190 4.08606 4.18428 4.22322 4.33737 4.35819 4.41010 4.43078 4.48310 4.64131 4.76076 4.91159 4.94765 4.97327 4.99161 5.02635 5.13158 5.20050 5.20713 5.45237 5.54667 5.79896 5.91322 6.00131 6.13442 6.46725 6.68285 6.83781 7.06367 8.00344 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.002745 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.032735 B =10197.215897 C =10768.746143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.395 3.605 3 O -0.990 6.990 4 O -0.975 6.975 5 C -0.555 4.555 6 C -0.153 4.153 7 C 0.087 3.913 8 O -0.343 6.343 9 C 0.519 3.481 10 O -0.581 6.581 11 C -0.299 4.299 12 C -0.038 4.038 13 C -0.214 4.214 14 C 0.105 3.895 15 C -0.459 4.459 16 H 0.101 0.899 17 C 0.044 3.956 18 N -0.776 5.776 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.264 1.264 22 H -0.246 1.246 23 C -0.251 4.251 24 C -0.016 4.016 25 C -0.131 4.131 26 C -0.159 4.159 27 H 0.145 0.855 28 H 0.133 0.867 29 H 0.163 0.837 30 H 0.180 0.820 31 H 0.153 0.847 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.302 0.698 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -17.900 -2.230 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.584 3.416 3 O -0.987 6.987 4 O -0.972 6.972 5 C -0.685 4.685 6 C -0.155 4.155 7 C 0.012 3.988 8 O -0.259 6.259 9 C 0.372 3.628 10 O -0.477 6.477 11 C -0.302 4.302 12 C -0.057 4.057 13 C -0.233 4.233 14 C 0.102 3.898 15 C -0.484 4.484 16 H 0.119 0.881 17 C -0.180 4.180 18 N -0.397 5.397 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.188 1.188 22 H -0.169 1.169 23 C -0.270 4.270 24 C -0.035 4.035 25 C -0.169 4.169 26 C -0.196 4.196 27 H 0.164 0.836 28 H 0.152 0.848 29 H 0.181 0.819 30 H 0.198 0.802 31 H 0.171 0.829 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.121 0.879 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.266 -17.329 -3.251 18.140 hybrid contribution 0.056 0.921 0.497 1.048 sum -4.210 -16.409 -2.753 17.162 Atomic orbital electron populations 1.30116 1.21943 1.14157 1.13051 1.08176 0.80306 0.74783 0.78324 1.93612 1.80817 1.37084 1.87200 1.93520 1.80835 1.67152 1.55707 1.29711 1.00626 1.16418 1.21708 1.20844 0.92279 0.89456 1.12874 1.22637 0.94259 0.87417 0.94439 1.86426 1.50502 1.23235 1.65783 1.21400 0.83135 0.80833 0.77410 1.90664 1.25203 1.79542 1.52302 1.18371 1.01651 0.94476 1.15678 1.20465 0.97619 0.92349 0.95290 1.20680 0.97162 0.98946 1.06496 1.18115 0.90692 0.93036 0.87948 1.20249 1.19144 0.91240 1.17729 0.88085 1.27099 0.90904 1.00959 0.99007 1.69829 1.26706 1.17652 1.25527 0.85151 0.80143 0.76643 0.77754 1.18742 1.18844 1.16936 1.20905 1.01999 0.95540 1.08600 1.20769 0.91576 0.98496 0.92623 1.23330 1.03237 0.96806 0.93568 1.23452 1.02229 0.97386 0.96522 0.83613 0.84848 0.81855 0.80241 0.82941 0.92771 0.90652 0.88840 0.88402 0.88647 0.86043 0.84786 0.87949 0.85052 0.85310 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.22 10.62 113.37 1.20 -6.02 16 2 S 2.40 51.39 5.28 -56.49 -0.30 51.09 16 3 O -0.99 -34.27 16.71 -127.37 -2.13 -36.40 16 4 O -0.97 -25.20 18.06 -127.37 -2.30 -27.50 16 5 C -0.55 -8.82 5.39 71.98 0.39 -8.43 16 6 C -0.15 -3.29 1.93 -52.18 -0.10 -3.39 16 7 C 0.09 2.80 4.71 71.98 0.34 3.14 16 8 O -0.34 -13.13 8.46 -56.92 -0.48 -13.61 16 9 C 0.52 24.60 7.89 70.27 0.55 25.16 16 10 O -0.58 -30.30 16.11 19.80 0.32 -29.98 16 11 C -0.30 -14.72 5.89 -19.95 -0.12 -14.83 16 12 C -0.04 -2.00 9.52 22.26 0.21 -1.79 16 13 C -0.21 -11.30 8.73 22.47 0.20 -11.10 16 14 C 0.11 5.38 5.57 -21.27 -0.12 5.26 16 15 C -0.46 -22.18 8.95 23.46 0.21 -21.97 16 16 H 0.10 4.52 8.01 -2.91 -0.02 4.50 16 17 C 0.04 1.99 4.79 85.36 0.41 2.40 16 18 N -0.78 -37.43 11.75 21.87 0.26 -37.17 16 19 Si 0.98 33.51 29.66 68.60 2.03 35.54 16 20 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 21 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 22 H -0.25 -7.96 7.11 99.48 0.71 -7.25 16 23 C -0.25 -11.51 9.73 22.47 0.22 -11.29 16 24 C -0.02 -0.72 9.55 22.26 0.21 -0.50 16 25 C -0.13 -1.95 9.86 30.59 0.30 -1.64 16 26 C -0.16 -2.65 9.94 30.59 0.30 -2.34 16 27 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.16 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.18 1.00 8.08 -2.39 -0.02 0.98 16 31 H 0.15 2.35 7.51 -2.39 -0.02 2.33 16 32 H 0.05 1.99 7.46 -2.38 -0.02 1.97 16 33 H 0.08 2.34 7.95 -2.38 -0.02 2.32 16 34 H 0.09 4.85 7.63 -2.91 -0.02 4.83 16 35 H 0.10 5.25 6.52 -2.91 -0.02 5.23 16 36 H 0.30 12.89 8.29 -92.71 -0.77 12.12 16 37 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.13 4.82 7.59 -2.91 -0.02 4.80 16 39 H 0.10 1.56 8.09 -2.38 -0.02 1.54 16 40 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -77.82 374.45 2.65 -75.17 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 1.03 Total: 30.22 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 4.21 Total: -47.35 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.26 Total: -37.17 kcal Atomic # 8 Polarization: -102.90 SS G_CDS: -4.59 Total: -107.49 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.54 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.30 Total: 51.09 kcal Total: -77.82 2.65 -75.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767721224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.284 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds