Wall clock time and date at job start Tue Mar 31 2020 20:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35915 * 117.00187 * 2 1 4 4 C 1.38861 * 119.97725 * 359.97349 * 3 2 1 5 5 C 1.38256 * 120.24748 * 180.02562 * 4 3 2 6 6 C 1.37995 * 120.20766 * 359.71985 * 5 4 3 7 7 C 1.39609 * 119.96343 * 0.57838 * 6 5 4 8 8 C 1.47746 * 120.12751 * 179.69551 * 7 6 5 9 9 O 1.21462 * 120.00102 * 179.72539 * 8 7 6 10 10 O 1.34713 * 119.99379 * 359.72376 * 8 7 6 11 11 C 1.45198 * 116.99405 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46862 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00119 * 359.97438 * 12 11 10 14 14 N 1.34785 * 119.99720 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99663 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47281 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99244 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00489 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99681 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00377 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46986 * 90.00222 * 20 18 16 22 22 H 1.48500 * 109.47308 * 210.00246 * 20 18 16 23 23 H 1.48498 * 109.46949 * 330.00297 * 20 18 16 24 24 C 1.38438 * 119.98186 * 179.97438 * 3 2 1 25 25 N 1.48018 * 120.10787 * 359.97220 * 24 3 2 26 26 O 1.21794 * 120.00079 * 270.02446 * 25 24 3 27 27 O 1.21801 * 119.99541 * 90.02548 * 25 24 3 28 28 H 1.09001 * 109.47367 * 300.00717 * 1 2 3 29 29 H 1.09005 * 109.46838 * 60.00663 * 1 2 3 30 30 H 1.08994 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.87756 * 359.97438 * 4 3 2 32 32 H 1.07991 * 119.89519 * 179.97438 * 5 4 3 33 33 H 1.08007 * 120.02003 * 180.27643 * 6 5 4 34 34 H 1.08998 * 109.47370 * 300.00097 * 11 10 8 35 35 H 1.08997 * 109.47571 * 60.00339 * 11 10 8 36 36 H 0.96992 * 120.00228 * 0.02562 * 14 12 11 37 37 H 1.08998 * 109.47218 * 300.00310 * 15 14 12 38 38 H 1.09006 * 109.46644 * 60.00268 * 15 14 12 39 39 H 0.96996 * 119.99888 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2893 2.3753 -0.0006 5 6 1.9112 3.6101 -0.0011 6 6 3.2886 3.6938 0.0048 7 6 4.0580 2.5288 -0.0010 8 6 5.5330 2.6142 -0.0015 9 8 6.2001 1.5992 -0.0015 10 8 6.1378 3.8179 -0.0021 11 6 7.5898 3.8259 -0.0021 12 6 8.0843 5.2495 -0.0022 13 8 7.2911 6.1669 -0.0027 14 7 9.4081 5.5030 -0.0016 15 6 9.8887 6.8869 -0.0023 16 6 11.3957 6.8953 -0.0008 17 1 11.9408 5.9629 0.0000 18 6 12.0785 8.0931 -0.0017 19 7 11.4146 9.2284 -0.0032 20 14 13.9465 8.1034 -0.0006 21 1 14.4422 8.1048 -1.4004 22 1 14.4344 9.3193 0.6985 23 1 14.4477 6.8944 0.7009 24 6 3.4286 1.2830 0.0005 25 7 4.2366 0.0428 0.0017 26 8 4.5683 -0.4669 1.0570 27 8 4.5699 -0.4678 -1.0527 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 0.2110 2.3161 -0.0014 32 1 1.3172 4.5119 -0.0019 33 1 3.7713 4.6600 0.0088 34 1 7.9560 3.3145 0.8881 35 1 7.9561 3.3137 -0.8918 36 1 10.0424 4.7693 -0.0016 37 1 9.5230 7.3982 -0.8928 38 1 9.5221 7.3993 0.8873 39 1 11.8949 10.0711 -0.0035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769584035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:14 Heat of formation + Delta-G solvation = -119.680010 kcal Electronic energy + Delta-G solvation = -28212.834254 eV Core-core repulsion = 23704.494476 eV Total energy + Delta-G solvation = -4508.339778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42990 -41.00460 -40.59690 -38.92635 -38.18109 -36.69111 -36.45207 -34.33192 -32.77292 -32.46960 -31.71396 -29.32730 -28.31011 -27.16080 -26.57721 -24.59122 -23.03050 -22.61358 -21.58160 -20.08186 -19.78661 -18.93955 -18.78813 -18.06700 -17.62279 -17.40839 -16.95140 -16.63443 -16.52303 -16.34348 -15.85079 -15.54634 -15.21927 -14.86727 -14.62170 -14.35956 -13.73981 -13.67570 -13.12296 -13.10561 -12.84533 -12.66447 -12.38553 -12.04737 -12.03226 -11.86994 -11.63139 -11.25648 -11.08285 -11.05495 -11.03391 -10.99227 -10.89106 -10.37890 -10.25085 -9.48547 -9.36184 -9.30489 -8.82747 -8.06557 -6.23326 -4.30898 -0.42533 0.23286 0.54418 1.12485 1.75432 1.84264 2.36027 2.72112 3.05990 3.21507 3.27874 3.30187 3.59078 3.79912 3.90454 4.05415 4.21233 4.29529 4.31089 4.38899 4.40531 4.55376 4.78431 4.95988 5.04012 5.09425 5.13589 5.19781 5.23200 5.37582 5.58516 5.90184 6.08533 6.34030 7.11159 7.17292 7.25471 7.39657 7.56203 7.56471 7.87198 8.41688 8.64277 8.87762 9.35678 10.86740 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.027180 B = 0.002038 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.918994 B =13738.283364 C =14624.211040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.166 3.834 4 C -0.166 4.166 5 C -0.053 4.053 6 C -0.080 4.080 7 C -0.041 4.041 8 C 0.500 3.500 9 O -0.485 6.485 10 O -0.314 6.314 11 C 0.048 3.952 12 C 0.502 3.498 13 O -0.535 6.535 14 N -0.704 5.704 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.065 0.935 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.012 4.012 25 N 0.037 4.963 26 O -0.128 6.128 27 O -0.128 6.128 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.394 0.606 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.208 -15.237 0.011 29.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.118 3.882 4 C -0.185 4.185 5 C -0.071 4.071 6 C -0.098 4.098 7 C -0.043 4.043 8 C 0.343 3.657 9 O -0.373 6.373 10 O -0.228 6.228 11 C -0.029 4.029 12 C 0.285 3.715 13 O -0.413 6.413 14 N -0.354 5.354 15 C 0.131 3.869 16 C -0.585 4.585 17 H 0.083 0.917 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.093 4.093 25 N 0.570 4.430 26 O -0.353 6.353 27 O -0.353 6.353 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.188 0.812 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.227 0.773 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.853 -14.157 0.015 29.475 hybrid contribution 1.407 -0.521 -0.011 1.501 sum -24.446 -14.678 0.004 28.514 Atomic orbital electron populations 1.23311 0.76040 1.05499 1.02160 1.86194 1.23419 1.24861 1.87673 1.18188 0.88378 0.86711 0.94924 1.21581 1.01313 0.90897 1.04721 1.21379 0.94322 0.98088 0.93337 1.21695 0.93708 0.98208 0.96225 1.18584 0.90948 0.91229 1.03572 1.20754 0.88221 0.82555 0.74184 1.90991 1.65911 1.36144 1.44282 1.86544 1.23186 1.30000 1.83070 1.23048 0.76165 0.98354 1.05299 1.19772 0.84059 0.88833 0.78882 1.90702 1.54863 1.45876 1.49837 1.46374 1.04559 1.12357 1.72082 1.19201 0.94164 0.75424 0.98076 1.21205 0.90431 0.93207 1.53613 0.91701 1.24952 0.99311 0.95172 0.94541 1.69971 1.36022 0.97561 1.48637 0.86374 0.84258 0.77777 0.78285 1.20402 1.20959 1.19678 1.20087 0.88730 0.85173 1.15345 1.42876 0.98820 1.00680 1.00664 1.94545 1.56536 1.63544 1.20656 1.94547 1.56466 1.63490 1.20784 0.91564 0.91559 0.86970 0.82498 0.82489 0.81217 0.87901 0.87894 0.77268 0.95181 0.95173 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.71 10.25 -19.47 -0.20 -2.91 16 3 C 0.17 1.51 6.68 -39.28 -0.26 1.25 16 4 C -0.17 -0.87 9.03 -39.34 -0.36 -1.23 16 5 C -0.05 -0.27 10.03 -39.66 -0.40 -0.67 16 6 C -0.08 -0.67 9.61 -39.16 -0.38 -1.04 16 7 C -0.04 -0.49 5.87 -105.00 -0.62 -1.11 16 8 C 0.50 7.37 7.90 34.62 0.27 7.64 16 9 O -0.49 -8.30 14.24 -25.84 -0.37 -8.67 16 10 O -0.31 -4.77 9.00 -47.21 -0.43 -5.19 16 11 C 0.05 0.72 5.95 36.01 0.21 0.94 16 12 C 0.50 9.67 7.91 -10.98 -0.09 9.58 16 13 O -0.54 -12.40 16.50 -14.10 -0.23 -12.63 16 14 N -0.70 -14.18 5.55 -61.47 -0.34 -14.52 16 15 C 0.25 6.43 5.43 -5.19 -0.03 6.41 16 16 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 17 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.50 13.29 55.43 0.74 -24.76 16 20 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.01 -0.15 6.18 -79.37 -0.49 -0.64 16 25 N 0.04 0.58 2.28 34.24 0.08 0.66 16 26 O -0.13 -2.14 18.93 -33.20 -0.63 -2.77 16 27 O -0.13 -2.14 18.92 -33.26 -0.63 -2.77 16 28 H 0.07 0.10 7.66 -51.93 -0.40 -0.30 16 29 H 0.07 0.10 7.66 -51.93 -0.40 -0.30 16 30 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.16 0.25 6.28 -52.49 -0.33 -0.08 16 32 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 33 H 0.17 1.37 7.61 -52.48 -0.40 0.97 16 34 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -36.85 361.12 -7.07 -43.92 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.93 Total: -0.39 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.55 Total: 9.07 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.47 Total: -38.63 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -2.48 Total: -34.94 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.85 -7.07 -43.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769584035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.755 kcal (2) G-P(sol) polarization free energy of solvation -36.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds