Wall clock time and date at job start Tue Mar 31 2020 20:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35915 * 117.00187 * 2 1 4 4 C 1.38861 * 119.97725 * 359.97349 * 3 2 1 5 5 C 1.38256 * 120.24748 * 180.02562 * 4 3 2 6 6 C 1.37995 * 120.20766 * 359.71985 * 5 4 3 7 7 C 1.39609 * 119.96343 * 0.57838 * 6 5 4 8 8 C 1.47746 * 120.12751 * 179.69551 * 7 6 5 9 9 O 1.21462 * 120.00102 * 179.72539 * 8 7 6 10 10 O 1.34713 * 119.99379 * 359.72376 * 8 7 6 11 11 C 1.45198 * 116.99405 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46862 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00119 * 359.97438 * 12 11 10 14 14 N 1.34785 * 119.99720 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99663 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47281 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99244 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00489 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99681 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00377 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46986 * 90.00222 * 20 18 16 22 22 H 1.48500 * 109.47308 * 210.00246 * 20 18 16 23 23 H 1.48498 * 109.46949 * 330.00297 * 20 18 16 24 24 C 1.38438 * 119.98186 * 179.97438 * 3 2 1 25 25 N 1.48018 * 120.10787 * 359.97220 * 24 3 2 26 26 O 1.21794 * 120.00079 * 270.02446 * 25 24 3 27 27 O 1.21801 * 119.99541 * 90.02548 * 25 24 3 28 28 H 1.09001 * 109.47367 * 300.00717 * 1 2 3 29 29 H 1.09005 * 109.46838 * 60.00663 * 1 2 3 30 30 H 1.08994 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.87756 * 359.97438 * 4 3 2 32 32 H 1.07991 * 119.89519 * 179.97438 * 5 4 3 33 33 H 1.08007 * 120.02003 * 180.27643 * 6 5 4 34 34 H 1.08998 * 109.47370 * 300.00097 * 11 10 8 35 35 H 1.08997 * 109.47571 * 60.00339 * 11 10 8 36 36 H 0.96992 * 120.00228 * 0.02562 * 14 12 11 37 37 H 1.08998 * 109.47218 * 300.00310 * 15 14 12 38 38 H 1.09006 * 109.46644 * 60.00268 * 15 14 12 39 39 H 0.96996 * 119.99888 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2893 2.3753 -0.0006 5 6 1.9112 3.6101 -0.0011 6 6 3.2886 3.6938 0.0048 7 6 4.0580 2.5288 -0.0010 8 6 5.5330 2.6142 -0.0015 9 8 6.2001 1.5992 -0.0015 10 8 6.1378 3.8179 -0.0021 11 6 7.5898 3.8259 -0.0021 12 6 8.0843 5.2495 -0.0022 13 8 7.2911 6.1669 -0.0027 14 7 9.4081 5.5030 -0.0016 15 6 9.8887 6.8869 -0.0023 16 6 11.3957 6.8953 -0.0008 17 1 11.9408 5.9629 0.0000 18 6 12.0785 8.0931 -0.0017 19 7 11.4146 9.2284 -0.0032 20 14 13.9465 8.1034 -0.0006 21 1 14.4422 8.1048 -1.4004 22 1 14.4344 9.3193 0.6985 23 1 14.4477 6.8944 0.7009 24 6 3.4286 1.2830 0.0005 25 7 4.2366 0.0428 0.0017 26 8 4.5683 -0.4669 1.0570 27 8 4.5699 -0.4678 -1.0527 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 0.2110 2.3161 -0.0014 32 1 1.3172 4.5119 -0.0019 33 1 3.7713 4.6600 0.0088 34 1 7.9560 3.3145 0.8881 35 1 7.9561 3.3137 -0.8918 36 1 10.0424 4.7693 -0.0016 37 1 9.5230 7.3982 -0.8928 38 1 9.5221 7.3993 0.8873 39 1 11.8949 10.0711 -0.0035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769584035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:14 Heat of formation + Delta-G solvation = -145.022184 kcal Electronic energy + Delta-G solvation = -28213.933173 eV Core-core repulsion = 23704.494476 eV Total energy + Delta-G solvation = -4509.438698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.44226 -42.08726 -41.37480 -40.48422 -38.88020 -37.91320 -37.63056 -36.22253 -34.44471 -33.47578 -32.44496 -30.80856 -28.70255 -28.64680 -27.76127 -25.54928 -24.54246 -23.71106 -22.56015 -21.72957 -20.71828 -19.94330 -19.76661 -19.34649 -18.73147 -18.52726 -18.13342 -17.90940 -17.23376 -17.12168 -17.03771 -16.93437 -16.36669 -16.36094 -16.07335 -15.16618 -14.84085 -14.82260 -14.31833 -14.12519 -14.02601 -13.78888 -13.73805 -13.38075 -12.95963 -12.84892 -12.80472 -12.73327 -12.41369 -12.39382 -12.30152 -12.24635 -12.17909 -12.08696 -11.51398 -11.00141 -10.87938 -10.83114 -9.97691 -9.96614 -8.30974 -6.47190 -1.17559 -0.65987 -0.38194 0.18845 0.75277 0.91619 1.44061 1.45042 1.47520 1.56746 1.74787 2.04897 2.26426 2.43913 3.02174 3.04405 3.28872 3.38025 3.44715 3.58907 3.76958 3.87332 3.91074 3.94897 4.19469 4.30579 4.49168 4.65921 4.69216 4.77300 4.87150 5.04688 5.05939 5.13157 5.20611 5.37994 5.59354 5.78445 5.80516 6.04797 6.33118 6.60419 6.71550 7.16446 7.30612 8.80909 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.027180 B = 0.002038 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.918994 B =13738.283364 C =14624.211040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.339 6.339 3 C 0.164 3.836 4 C -0.138 4.138 5 C -0.031 4.031 6 C -0.074 4.074 7 C -0.071 4.071 8 C 0.502 3.498 9 O -0.519 6.519 10 O -0.322 6.322 11 C 0.058 3.942 12 C 0.505 3.495 13 O -0.577 6.577 14 N -0.698 5.698 15 C 0.267 3.733 16 C -0.559 4.559 17 H 0.084 0.916 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.983 3.017 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.257 1.257 24 C -0.047 4.047 25 N 0.040 4.960 26 O -0.157 6.157 27 O -0.157 6.157 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.207 0.793 32 H 0.206 0.794 33 H 0.172 0.828 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.412 0.588 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.215 -15.304 0.017 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.252 6.252 3 C 0.116 3.884 4 C -0.157 4.157 5 C -0.048 4.048 6 C -0.092 4.092 7 C -0.074 4.074 8 C 0.347 3.653 9 O -0.410 6.410 10 O -0.236 6.236 11 C -0.018 4.018 12 C 0.290 3.710 13 O -0.457 6.457 14 N -0.349 5.349 15 C 0.145 3.855 16 C -0.597 4.597 17 H 0.102 0.898 18 C -0.194 4.194 19 N -0.566 5.566 20 Si 0.807 3.193 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.181 1.181 24 C -0.128 4.128 25 N 0.568 4.432 26 O -0.379 6.379 27 O -0.379 6.379 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.224 0.776 32 H 0.223 0.777 33 H 0.189 0.811 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.249 0.751 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.867 -14.289 0.021 31.317 hybrid contribution 1.772 -0.464 -0.014 1.832 sum -26.095 -14.753 0.007 29.977 Atomic orbital electron populations 1.23745 0.73169 1.07038 1.04358 1.86185 1.26429 1.25169 1.87403 1.18497 0.87215 0.88344 0.94300 1.22176 1.03254 0.89087 1.01168 1.21943 0.92854 0.99909 0.90091 1.21910 0.95270 0.96772 0.95286 1.18533 0.89299 0.92313 1.07227 1.21291 0.89495 0.81611 0.72942 1.90966 1.66889 1.36902 1.46197 1.86528 1.23061 1.30713 1.83310 1.22896 0.76648 0.94790 1.07479 1.20400 0.83166 0.90374 0.77026 1.90677 1.55801 1.47809 1.51406 1.46053 1.05635 1.10893 1.72325 1.18655 0.94292 0.77704 0.94839 1.21609 0.90737 0.94165 1.53144 0.89768 1.26013 1.04859 0.94681 0.93839 1.70120 1.38338 0.98401 1.49756 0.85171 0.77445 0.78144 0.78561 1.19676 1.20910 1.18133 1.20311 0.89768 0.83162 1.19568 1.43350 0.98385 1.01568 0.99899 1.94501 1.57554 1.64969 1.20884 1.94503 1.57495 1.64920 1.21011 0.89251 0.89245 0.86116 0.77648 0.77667 0.81097 0.85675 0.85664 0.75150 0.98650 0.98639 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.81 113.37 1.11 1.14 16 2 O -0.34 -5.40 10.25 -92.59 -0.95 -6.35 16 3 C 0.16 2.67 6.68 22.47 0.15 2.82 16 4 C -0.14 -0.78 9.03 22.42 0.20 -0.58 16 5 C -0.03 -0.17 10.03 22.22 0.22 0.06 16 6 C -0.07 -1.08 9.61 22.54 0.22 -0.86 16 7 C -0.07 -1.71 5.87 -20.11 -0.12 -1.82 16 8 C 0.50 15.17 7.90 70.34 0.56 15.72 16 9 O -0.52 -18.53 14.24 26.27 0.37 -18.15 16 10 O -0.32 -9.85 9.00 -49.84 -0.45 -10.30 16 11 C 0.06 1.72 5.95 71.24 0.42 2.15 16 12 C 0.51 19.74 7.91 87.66 0.69 20.43 16 13 O -0.58 -27.53 16.50 15.77 0.26 -27.27 16 14 N -0.70 -28.45 5.55 -466.77 -2.59 -31.04 16 15 C 0.27 14.17 5.43 85.63 0.46 14.64 16 16 C -0.56 -29.69 9.28 25.60 0.24 -29.46 16 17 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 20 Si 0.98 41.79 29.54 68.60 2.03 43.81 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 24 C -0.05 -1.17 6.18 36.75 0.23 -0.95 16 25 N 0.04 1.32 2.28 -45.58 -0.10 1.22 16 26 O -0.16 -5.59 18.93 22.47 0.43 -5.16 16 27 O -0.16 -5.60 18.92 22.51 0.43 -5.17 16 28 H 0.09 -0.14 7.66 -2.39 -0.02 -0.16 16 29 H 0.09 -0.14 7.66 -2.38 -0.02 -0.16 16 30 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.21 -0.83 6.28 -2.91 -0.02 -0.85 16 32 H 0.21 -0.76 8.06 -2.91 -0.02 -0.78 16 33 H 0.17 2.48 7.61 -2.91 -0.02 2.45 16 34 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 37 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 39 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -87.46 361.12 4.91 -82.55 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.36 Total: 6.18 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 4.85 Total: 24.08 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.41 Total: -84.21 kcal Atomic # 8 Polarization: -72.50 SS G_CDS: 0.09 Total: -72.41 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -87.46 4.91 -82.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769584035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.476 kcal (2) G-P(sol) polarization free energy of solvation -87.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds