Wall clock time and date at job start Tue Mar 31 2020 20:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 O 1.45207 * 109.47029 * 270.02085 * 14 13 12 16 16 C 1.34228 * 116.99916 * 180.02562 * 15 14 13 17 17 O 1.20821 * 120.00436 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99720 * 180.02562 * 16 15 14 19 19 O 1.42896 * 109.22737 * 35.59414 * 18 16 15 20 20 C 1.52584 * 109.22611 * 276.22949 * 18 16 15 21 21 C 1.53095 * 109.95875 * 169.00159 * 20 18 16 22 22 S 1.81749 * 108.83796 * 63.02898 * 21 20 18 23 23 C 1.81747 * 102.22073 * 306.73427 * 22 21 20 24 24 C 1.52590 * 109.22640 * 154.99846 * 18 16 15 25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 32 32 H 0.96702 * 113.99785 * 300.00265 * 19 18 16 33 33 H 1.08996 * 109.39334 * 289.15871 * 20 18 16 34 34 H 1.09002 * 109.38579 * 48.85980 * 20 18 16 35 35 H 1.09001 * 109.58011 * 303.22268 * 21 20 18 36 36 H 1.09001 * 109.68167 * 182.89319 * 21 20 18 37 37 H 1.08997 * 109.57377 * 293.45556 * 23 22 21 38 38 H 1.09005 * 109.68155 * 173.13368 * 23 22 21 39 39 H 1.08989 * 109.38584 * 311.13898 * 24 18 16 40 40 H 1.09002 * 109.38855 * 70.84471 * 24 18 16 41 41 H 1.07999 * 119.96698 * 179.97438 * 25 13 12 42 42 H 1.07992 * 120.03608 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 8 4.6409 -7.6185 0.8806 16 6 5.3613 -8.7489 0.9511 17 8 5.7642 -9.2726 -0.0604 18 6 5.6666 -9.3654 2.2918 19 8 4.5504 -9.1735 3.1632 20 6 6.8934 -8.6838 2.8907 21 6 7.0583 -9.0975 4.3554 22 16 7.3548 -10.8891 4.4293 23 6 5.9538 -11.5505 3.4791 24 6 5.9132 -10.8606 2.1130 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6953 -6.8452 -0.4323 30 1 3.8358 -7.8156 -1.0337 31 1 5.3321 -6.8566 -0.9342 32 1 4.3270 -8.2454 3.3175 33 1 7.7806 -8.9773 2.3295 34 1 6.7712 -7.6022 2.8318 35 1 6.1508 -8.8545 4.9080 36 1 7.9052 -8.5689 4.7931 37 1 5.0247 -11.3553 4.0146 38 1 6.0776 -12.6248 3.3421 39 1 5.1104 -11.2905 1.5142 40 1 6.8644 -11.0120 1.6026 41 1 5.2812 -4.5470 -0.1945 42 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769814558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:58 Heat of formation + Delta-G solvation = -141.495941 kcal Electronic energy + Delta-G solvation = -26318.115121 eV Core-core repulsion = 22355.122547 eV Total energy + Delta-G solvation = -3962.992574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.10632 -39.24680 -38.50743 -37.08313 -36.22257 -34.04156 -32.50883 -32.10170 -30.72963 -30.32261 -28.30155 -26.13366 -24.98490 -23.71972 -22.63731 -22.13794 -20.73326 -20.60423 -18.54924 -18.14770 -17.53115 -17.41276 -17.01002 -16.50794 -15.99442 -15.17645 -14.96642 -14.73280 -14.55089 -14.27071 -14.21491 -13.85493 -13.72311 -13.64458 -13.32641 -13.17220 -12.99310 -12.85100 -12.71054 -12.34315 -12.17301 -12.09256 -11.79474 -11.59768 -11.49203 -11.11384 -10.89600 -10.85569 -10.76772 -10.59283 -10.51509 -10.29796 -10.04389 -9.48261 -8.97406 -8.35122 -8.04473 -7.41137 -6.58609 -4.17270 1.39840 1.80026 1.87750 2.07559 2.14513 2.65263 3.04927 3.06287 3.11839 3.67367 3.85654 4.00815 4.06059 4.24647 4.40743 4.52623 4.75881 4.80902 4.94572 4.96110 5.01138 5.05993 5.09679 5.15189 5.23139 5.29909 5.43073 5.47418 5.50120 5.55542 5.68576 5.69323 6.05391 6.25311 6.30899 6.51582 6.72661 6.89566 7.02114 7.07525 7.18455 7.28535 7.52487 7.63935 7.86024 8.86572 9.53808 10.58744 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.002102 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.717986 B =13317.854961 C =13847.761280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.164 3.836 11 C -0.196 4.196 12 C -0.047 4.047 13 C -0.207 4.207 14 C 0.130 3.870 15 O -0.349 6.349 16 C 0.438 3.562 17 O -0.503 6.503 18 C 0.148 3.852 19 O -0.540 6.540 20 C -0.149 4.149 21 C -0.073 4.073 22 S -0.267 6.267 23 C -0.074 4.074 24 C -0.098 4.098 25 C -0.044 4.044 26 C -0.238 4.238 27 H 0.272 0.728 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.394 0.606 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.539 -17.659 6.022 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.109 3.891 11 C -0.215 4.215 12 C -0.066 4.066 13 C -0.208 4.208 14 C 0.058 3.942 15 O -0.266 6.266 16 C 0.279 3.721 17 O -0.391 6.391 18 C 0.105 3.895 19 O -0.348 6.348 20 C -0.189 4.189 21 C -0.221 4.221 22 S -0.041 6.041 23 C -0.222 4.222 24 C -0.137 4.137 25 C -0.063 4.063 26 C -0.257 4.257 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.244 0.756 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.026 -18.743 6.237 23.661 hybrid contribution -0.511 2.181 -0.835 2.390 sum 12.515 -16.562 5.401 21.450 Atomic orbital electron populations 1.70042 1.06034 1.27887 1.45138 1.25345 0.95884 0.99004 0.96255 0.85612 0.79141 0.80094 0.78389 1.19014 1.20015 1.20004 1.21425 0.91934 0.80652 1.52963 0.88788 1.83978 1.34572 1.11598 1.77114 1.19448 0.90312 0.88047 0.91325 1.20199 0.99744 0.90186 1.11357 1.20507 0.92584 0.96951 0.96515 1.18825 0.93332 0.92213 1.16470 1.21754 0.99133 0.93309 0.80007 1.86606 1.65095 1.38160 1.36694 1.24456 0.75539 0.79505 0.92552 1.90665 1.49374 1.61744 1.37306 1.21048 0.88050 0.96413 0.84011 1.86548 1.48534 1.33221 1.66459 1.22401 0.98161 1.02058 0.96248 1.23315 1.06593 0.94038 0.98129 1.86899 1.38413 1.06196 1.72548 1.23347 0.99512 1.02640 0.96694 1.21631 1.04900 0.89869 0.97325 1.20602 0.98355 0.91639 0.95677 1.21141 0.93771 0.98916 1.11902 0.91833 0.86159 0.86899 0.91086 0.91143 0.75567 0.88748 0.89070 0.88521 0.87134 0.88253 0.87302 0.89363 0.88282 0.87400 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.30 13.67 55.48 0.76 -23.54 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.72 29.55 -169.99 -5.02 14.70 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.56 9.49 30.89 0.29 -10.26 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.66 9.76 0.05 0.00 -4.66 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 12 C -0.05 -0.80 9.69 -39.60 -0.38 -1.19 16 13 C -0.21 -3.40 5.52 -104.58 -0.58 -3.97 16 14 C 0.13 1.81 5.59 36.00 0.20 2.02 16 15 O -0.35 -4.60 9.63 -44.45 -0.43 -5.03 16 16 C 0.44 5.33 6.73 36.00 0.24 5.58 16 17 O -0.50 -7.24 16.00 -18.75 -0.30 -7.54 16 18 C 0.15 1.36 0.91 -92.20 -0.08 1.28 16 19 O -0.54 -4.86 10.60 -49.23 -0.52 -5.38 16 20 C -0.15 -1.14 4.81 -26.89 -0.13 -1.27 16 21 C -0.07 -0.51 6.26 37.21 0.23 -0.28 16 22 S -0.27 -2.29 22.33 -107.50 -2.40 -4.69 16 23 C -0.07 -0.57 6.26 37.21 0.23 -0.34 16 24 C -0.10 -0.85 4.24 -26.89 -0.11 -0.96 16 25 C -0.04 -0.77 9.69 -39.61 -0.38 -1.15 16 26 C -0.24 -4.88 9.17 -39.39 -0.36 -5.25 16 27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.39 2.85 8.61 45.56 0.39 3.24 16 33 H 0.09 0.73 8.06 -51.93 -0.42 0.31 16 34 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.10 0.67 7.35 -51.93 -0.38 0.29 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.81 7.35 -51.93 -0.38 0.43 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.10 0.85 8.06 -51.93 -0.42 0.43 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -30.77 364.70 -8.70 -39.47 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.70 Total: 6.83 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -1.58 Total: -15.64 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.76 Total: -23.54 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.25 Total: -22.62 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.40 Total: -4.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.77 -8.70 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769814558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.023 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds