Wall clock time and date at job start Tue Mar 31 2020 20:32:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31556 * 1
3 3 Si 1.86795 * 119.99959 * 2 1
4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1
5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1
6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1
7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3
8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1
9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1
10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2
11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7
12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9
13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10
14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11
15 15 O 1.45207 * 109.47029 * 270.02085 * 14 13 12
16 16 C 1.34228 * 116.99916 * 180.02562 * 15 14 13
17 17 O 1.20821 * 120.00436 * 359.97438 * 16 15 14
18 18 C 1.50697 * 119.99720 * 180.02562 * 16 15 14
19 19 O 1.42896 * 109.22737 * 35.59414 * 18 16 15
20 20 C 1.52584 * 109.22611 * 276.22949 * 18 16 15
21 21 C 1.53095 * 109.95875 * 169.00159 * 20 18 16
22 22 S 1.81749 * 108.83796 * 63.02898 * 21 20 18
23 23 C 1.81747 * 102.22073 * 306.73427 * 22 21 20
24 24 C 1.52590 * 109.22640 * 154.99846 * 18 16 15
25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11
26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12
27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3
28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9
29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10
30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12
31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12
32 32 H 0.96702 * 113.99785 * 300.00265 * 19 18 16
33 33 H 1.08996 * 109.39334 * 289.15871 * 20 18 16
34 34 H 1.09002 * 109.38579 * 48.85980 * 20 18 16
35 35 H 1.09001 * 109.58011 * 303.22268 * 21 20 18
36 36 H 1.09001 * 109.68167 * 182.89319 * 21 20 18
37 37 H 1.08997 * 109.57377 * 293.45556 * 23 22 21
38 38 H 1.09005 * 109.68155 * 173.13368 * 23 22 21
39 39 H 1.08989 * 109.38584 * 311.13898 * 24 18 16
40 40 H 1.09002 * 109.38855 * 70.84471 * 24 18 16
41 41 H 1.07999 * 119.96698 * 179.97438 * 25 13 12
42 42 H 1.07992 * 120.03608 * 179.97438 * 26 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.7095 1.3464 -0.0006
5 1 1.8908 2.3964 -1.2124
6 1 1.8908 2.3964 1.2126
7 6 2.0089 -1.2008 -0.0005
8 1 3.0889 -1.2007 -0.0010
9 8 1.3348 -2.3685 -0.0005
10 6 2.0700 -3.5046 -0.1076
11 6 1.4365 -4.7349 -0.2242
12 6 2.1874 -5.8885 -0.3378
13 6 3.5686 -5.8202 -0.3255
14 6 4.3848 -7.0815 -0.4440
15 8 4.6409 -7.6185 0.8806
16 6 5.3613 -8.7489 0.9511
17 8 5.7642 -9.2726 -0.0604
18 6 5.6666 -9.3654 2.2918
19 8 4.5504 -9.1735 3.1632
20 6 6.8934 -8.6838 2.8907
21 6 7.0583 -9.0975 4.3554
22 16 7.3548 -10.8891 4.4293
23 6 5.9538 -11.5505 3.4791
24 6 5.9132 -10.8606 2.1130
25 6 4.2024 -4.5970 -0.2043
26 6 3.4573 -3.4394 -0.0956
27 1 -0.4850 0.8400 0.0004
28 1 0.3579 -4.7892 -0.2301
29 1 1.6953 -6.8452 -0.4323
30 1 3.8358 -7.8156 -1.0337
31 1 5.3321 -6.8566 -0.9342
32 1 4.3270 -8.2454 3.3175
33 1 7.7806 -8.9773 2.3295
34 1 6.7712 -7.6022 2.8318
35 1 6.1508 -8.8545 4.9080
36 1 7.9052 -8.5689 4.7931
37 1 5.0247 -11.3553 4.0146
38 1 6.0776 -12.6248 3.3421
39 1 5.1104 -11.2905 1.5142
40 1 6.8644 -11.0120 1.6026
41 1 5.2812 -4.5470 -0.1945
42 1 3.9527 -2.4845 -0.0005
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000769814558.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:32:58
Heat of formation + Delta-G solvation = -141.495941 kcal
Electronic energy + Delta-G solvation = -26318.115121 eV
Core-core repulsion = 22355.122547 eV
Total energy + Delta-G solvation = -3962.992574 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 338.107 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.10632 -39.24680 -38.50743 -37.08313 -36.22257 -34.04156 -32.50883 -32.10170
-30.72963 -30.32261 -28.30155 -26.13366 -24.98490 -23.71972 -22.63731 -22.13794
-20.73326 -20.60423 -18.54924 -18.14770 -17.53115 -17.41276 -17.01002 -16.50794
-15.99442 -15.17645 -14.96642 -14.73280 -14.55089 -14.27071 -14.21491 -13.85493
-13.72311 -13.64458 -13.32641 -13.17220 -12.99310 -12.85100 -12.71054 -12.34315
-12.17301 -12.09256 -11.79474 -11.59768 -11.49203 -11.11384 -10.89600 -10.85569
-10.76772 -10.59283 -10.51509 -10.29796 -10.04389 -9.48261 -8.97406 -8.35122
-8.04473 -7.41137 -6.58609 -4.17270 1.39840 1.80026 1.87750 2.07559
2.14513 2.65263 3.04927 3.06287 3.11839 3.67367 3.85654 4.00815
4.06059 4.24647 4.40743 4.52623 4.75881 4.80902 4.94572 4.96110
5.01138 5.05993 5.09679 5.15189 5.23139 5.29909 5.43073 5.47418
5.50120 5.55542 5.68576 5.69323 6.05391 6.25311 6.30899 6.51582
6.72661 6.89566 7.02114 7.07525 7.18455 7.28535 7.52487 7.63935
7.86024 8.86572 9.53808 10.58744
Molecular weight = 338.11amu
Principal moments of inertia in cm(-1)
A = 0.021505 B = 0.002102 C = 0.002022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1301.717986 B =13317.854961 C =13847.761280
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.857 5.857
2 C 0.040 3.960
3 Si 0.943 3.057
4 H -0.266 1.266
5 H -0.275 1.275
6 H -0.275 1.275
7 C -0.394 4.394
8 H 0.095 0.905
9 O -0.170 6.170
10 C 0.164 3.836
11 C -0.196 4.196
12 C -0.047 4.047
13 C -0.207 4.207
14 C 0.130 3.870
15 O -0.349 6.349
16 C 0.438 3.562
17 O -0.503 6.503
18 C 0.148 3.852
19 O -0.540 6.540
20 C -0.149 4.149
21 C -0.073 4.073
22 S -0.267 6.267
23 C -0.074 4.074
24 C -0.098 4.098
25 C -0.044 4.044
26 C -0.238 4.238
27 H 0.272 0.728
28 H 0.120 0.880
29 H 0.113 0.887
30 H 0.071 0.929
31 H 0.070 0.930
32 H 0.394 0.606
33 H 0.094 0.906
34 H 0.091 0.909
35 H 0.096 0.904
36 H 0.110 0.890
37 H 0.099 0.901
38 H 0.109 0.891
39 H 0.088 0.912
40 H 0.099 0.901
41 H 0.108 0.892
42 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.539 -17.659 6.022 22.479
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.491 5.491
2 C -0.165 4.165
3 Si 0.768 3.232
4 H -0.190 1.190
5 H -0.200 1.200
6 H -0.200 1.200
7 C -0.470 4.470
8 H 0.112 0.888
9 O -0.073 6.073
10 C 0.109 3.891
11 C -0.215 4.215
12 C -0.066 4.066
13 C -0.208 4.208
14 C 0.058 3.942
15 O -0.266 6.266
16 C 0.279 3.721
17 O -0.391 6.391
18 C 0.105 3.895
19 O -0.348 6.348
20 C -0.189 4.189
21 C -0.221 4.221
22 S -0.041 6.041
23 C -0.222 4.222
24 C -0.137 4.137
25 C -0.063 4.063
26 C -0.257 4.257
27 H 0.082 0.918
28 H 0.138 0.862
29 H 0.131 0.869
30 H 0.089 0.911
31 H 0.089 0.911
32 H 0.244 0.756
33 H 0.113 0.887
34 H 0.109 0.891
35 H 0.115 0.885
36 H 0.129 0.871
37 H 0.117 0.883
38 H 0.127 0.873
39 H 0.106 0.894
40 H 0.117 0.883
41 H 0.126 0.874
42 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 13.026 -18.743 6.237 23.661
hybrid contribution -0.511 2.181 -0.835 2.390
sum 12.515 -16.562 5.401 21.450
Atomic orbital electron populations
1.70042 1.06034 1.27887 1.45138 1.25345 0.95884 0.99004 0.96255
0.85612 0.79141 0.80094 0.78389 1.19014 1.20015 1.20004 1.21425
0.91934 0.80652 1.52963 0.88788 1.83978 1.34572 1.11598 1.77114
1.19448 0.90312 0.88047 0.91325 1.20199 0.99744 0.90186 1.11357
1.20507 0.92584 0.96951 0.96515 1.18825 0.93332 0.92213 1.16470
1.21754 0.99133 0.93309 0.80007 1.86606 1.65095 1.38160 1.36694
1.24456 0.75539 0.79505 0.92552 1.90665 1.49374 1.61744 1.37306
1.21048 0.88050 0.96413 0.84011 1.86548 1.48534 1.33221 1.66459
1.22401 0.98161 1.02058 0.96248 1.23315 1.06593 0.94038 0.98129
1.86899 1.38413 1.06196 1.72548 1.23347 0.99512 1.02640 0.96694
1.21631 1.04900 0.89869 0.97325 1.20602 0.98355 0.91639 0.95677
1.21141 0.93771 0.98916 1.11902 0.91833 0.86159 0.86899 0.91086
0.91143 0.75567 0.88748 0.89070 0.88521 0.87134 0.88253 0.87302
0.89363 0.88282 0.87400 0.85237
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -24.30 13.67 55.48 0.76 -23.54 16
2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16
3 Si 0.94 19.72 29.55 -169.99 -5.02 14.70 16
4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16
5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16
6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
7 C -0.39 -10.56 9.49 30.89 0.29 -10.26 16
8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16
9 O -0.17 -4.66 9.76 0.05 0.00 -4.66 16
10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16
11 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16
12 C -0.05 -0.80 9.69 -39.60 -0.38 -1.19 16
13 C -0.21 -3.40 5.52 -104.58 -0.58 -3.97 16
14 C 0.13 1.81 5.59 36.00 0.20 2.02 16
15 O -0.35 -4.60 9.63 -44.45 -0.43 -5.03 16
16 C 0.44 5.33 6.73 36.00 0.24 5.58 16
17 O -0.50 -7.24 16.00 -18.75 -0.30 -7.54 16
18 C 0.15 1.36 0.91 -92.20 -0.08 1.28 16
19 O -0.54 -4.86 10.60 -49.23 -0.52 -5.38 16
20 C -0.15 -1.14 4.81 -26.89 -0.13 -1.27 16
21 C -0.07 -0.51 6.26 37.21 0.23 -0.28 16
22 S -0.27 -2.29 22.33 -107.50 -2.40 -4.69 16
23 C -0.07 -0.57 6.26 37.21 0.23 -0.34 16
24 C -0.10 -0.85 4.24 -26.89 -0.11 -0.96 16
25 C -0.04 -0.77 9.69 -39.61 -0.38 -1.15 16
26 C -0.24 -4.88 9.17 -39.39 -0.36 -5.25 16
27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16
28 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16
29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16
30 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16
31 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16
32 H 0.39 2.85 8.61 45.56 0.39 3.24 16
33 H 0.09 0.73 8.06 -51.93 -0.42 0.31 16
34 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16
35 H 0.10 0.67 7.35 -51.93 -0.38 0.29 16
36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16
37 H 0.10 0.81 7.35 -51.93 -0.38 0.43 16
38 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16
40 H 0.10 0.85 8.06 -51.93 -0.42 0.43 16
41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16
42 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16
LS Contribution 364.70 15.07 5.50 5.50
Total: -1.00 -30.77 364.70 -8.70 -39.47
By element:
Atomic # 1 Polarization: 11.53 SS G_CDS: -4.70 Total: 6.83 kcal
Atomic # 6 Polarization: -14.06 SS G_CDS: -1.58 Total: -15.64 kcal
Atomic # 7 Polarization: -24.30 SS G_CDS: 0.76 Total: -23.54 kcal
Atomic # 8 Polarization: -21.37 SS G_CDS: -1.25 Total: -22.62 kcal
Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal
Atomic # 16 Polarization: -2.29 SS G_CDS: -2.40 Total: -4.69 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -30.77 -8.70 -39.47 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000769814558.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.023 kcal
(2) G-P(sol) polarization free energy of solvation -30.769 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.496 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds