Wall clock time and date at job start Tue Mar 31 2020 21:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34236 * 116.99567 * 2 1 4 4 O 1.20826 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99679 * 179.97438 * 3 2 1 6 6 S 1.81396 * 109.47101 * 179.97438 * 5 3 2 7 7 C 1.81400 * 103.00113 * 179.97438 * 6 5 3 8 8 C 1.52994 * 109.47199 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47176 * 180.02562 * 8 7 6 10 10 O 1.20823 * 120.00135 * 0.02562 * 9 8 7 11 11 O 1.34235 * 119.99963 * 179.97438 * 9 8 7 12 12 C 1.45200 * 116.99794 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47044 * 180.02562 * 12 11 9 14 14 C 1.38633 * 119.74785 * 269.73062 * 13 12 11 15 15 C 1.37616 * 120.24971 * 179.72226 * 14 13 12 16 16 C 1.40726 * 119.74353 * 0.56653 * 15 14 13 17 17 C 1.41392 * 120.24573 * 179.68153 * 16 15 14 18 18 H 1.07998 * 120.00120 * 204.40682 * 17 16 15 19 19 C 1.39945 * 119.99829 * 24.40979 * 17 16 15 20 20 N 1.30824 * 120.00405 * 17.84574 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 197.84402 * 19 17 16 22 22 H 1.48498 * 109.47062 * 59.99965 * 21 19 17 23 23 H 1.48505 * 109.47337 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47130 * 299.99991 * 21 19 17 25 25 C 1.40715 * 119.50640 * 359.70704 * 16 15 14 26 26 C 1.37616 * 119.75074 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46536 * 60.00712 * 1 2 3 28 28 H 1.09002 * 109.46907 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47619 * 300.00900 * 1 2 3 30 30 H 1.09003 * 109.47241 * 59.99395 * 5 3 2 31 31 H 1.08996 * 109.46840 * 299.99735 * 5 3 2 32 32 H 1.09000 * 109.46753 * 60.00393 * 7 6 5 33 33 H 1.08993 * 109.47215 * 300.00370 * 7 6 5 34 34 H 1.09001 * 109.47455 * 59.99620 * 8 7 6 35 35 H 1.09001 * 109.47076 * 300.00029 * 8 7 6 36 36 H 1.09004 * 109.47012 * 300.00047 * 12 11 9 37 37 H 1.09003 * 109.47353 * 60.00225 * 12 11 9 38 38 H 1.07996 * 119.87768 * 359.97438 * 14 13 12 39 39 H 1.08002 * 120.13552 * 180.27593 * 15 14 13 40 40 H 0.97002 * 120.00394 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.12445 * 179.97438 * 25 16 15 42 42 H 1.07993 * 119.88115 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 16 4.0806 3.0145 -0.0003 7 6 5.8913 2.9048 0.0013 8 6 6.4876 4.3137 0.0014 9 6 7.9918 4.2225 0.0021 10 8 8.5315 3.1415 0.0020 11 8 8.7321 5.3423 0.0017 12 6 10.1748 5.1787 0.0030 13 6 10.8341 6.5339 0.0031 14 6 11.1411 7.1495 -1.2006 15 6 11.7380 8.3894 -1.2126 16 6 12.0474 9.0271 0.0031 17 6 12.6668 10.2982 0.0030 18 1 13.2500 10.6147 0.8551 19 6 12.5240 11.1461 -1.1011 20 7 11.5639 10.9388 -1.9653 21 14 13.7043 12.5739 -1.3410 22 1 15.0903 12.0551 -1.4639 23 1 13.3418 13.3136 -2.5766 24 1 13.6195 13.4878 -0.1735 25 6 11.7364 8.3902 1.2186 26 6 11.1335 7.1532 1.2067 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 3.9564 0.7806 -0.8891 31 1 3.9556 0.7811 0.8908 32 1 6.2235 2.3693 -0.8880 33 1 6.2221 2.3706 0.8919 34 1 6.1552 4.8490 0.8908 35 1 6.1568 4.8483 -0.8891 36 1 10.4772 4.6279 0.8938 37 1 10.4787 4.6264 -0.8863 38 1 10.9074 6.6559 -2.1323 39 1 11.9723 8.8692 -2.1514 40 1 11.4652 11.5263 -2.7308 41 1 11.9698 8.8704 2.1575 42 1 10.8942 6.6623 2.1384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776113324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:01 Heat of formation + Delta-G solvation = -159.754256 kcal Electronic energy + Delta-G solvation = -24369.135131 eV Core-core repulsion = 20405.350817 eV Total energy + Delta-G solvation = -3963.784314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87317 -40.21314 -37.73544 -37.00659 -36.22812 -33.89184 -33.27173 -31.31749 -30.80047 -29.38829 -27.80373 -27.40751 -25.39345 -23.60668 -21.87777 -21.10954 -20.54913 -20.07017 -18.20169 -17.75026 -17.40807 -17.23003 -17.17059 -16.52098 -16.38716 -15.96986 -15.40123 -15.02701 -14.46490 -14.41985 -14.13266 -13.90772 -13.63699 -13.33533 -13.09246 -12.74915 -12.69094 -12.52352 -12.40587 -12.21845 -12.03666 -11.74719 -11.68373 -11.32606 -11.18400 -11.07826 -11.02370 -10.87291 -10.49179 -10.39787 -10.33585 -10.18805 -9.72570 -9.48447 -9.23404 -8.09446 -7.58282 -7.47126 -6.87979 -4.48105 0.76154 1.65319 1.98591 2.26475 2.35164 2.46611 2.96480 2.99510 3.01700 3.04785 3.40067 3.84633 4.19158 4.37955 4.38900 4.50039 4.59529 4.61095 4.66325 4.70726 5.02247 5.03847 5.27260 5.37199 5.55283 5.59383 5.63448 5.67943 5.79986 6.04441 6.22997 6.29332 6.79698 6.85955 6.95991 7.16523 7.16802 7.24841 7.49856 7.71955 7.93957 7.97424 7.99494 8.17649 8.52148 8.76893 8.85123 10.05693 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.001494 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.765305 B =18740.000268 C =19308.717653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.478 3.522 4 O -0.483 6.483 5 C -0.106 4.106 6 S -0.174 6.174 7 C -0.091 4.091 8 C -0.102 4.102 9 C 0.463 3.537 10 O -0.523 6.523 11 O -0.347 6.347 12 C 0.137 3.863 13 C -0.239 4.239 14 C -0.075 4.075 15 C -0.171 4.171 16 C 0.119 3.881 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.784 5.784 21 Si 0.911 3.089 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.231 4.231 26 C -0.063 4.063 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.284 0.716 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.862 -17.788 1.500 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.319 3.681 4 O -0.368 6.368 5 C -0.254 4.254 6 S 0.053 5.947 7 C -0.240 4.240 8 C -0.140 4.140 9 C 0.305 3.695 10 O -0.413 6.413 11 O -0.263 6.263 12 C 0.065 3.935 13 C -0.240 4.240 14 C -0.094 4.094 15 C -0.190 4.190 16 C 0.116 3.884 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.409 5.409 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.250 4.250 26 C -0.081 4.081 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.664 -16.787 1.278 23.688 hybrid contribution 1.080 -0.500 -0.172 1.203 sum -15.584 -17.287 1.106 23.301 Atomic orbital electron populations 1.23342 0.75449 1.04005 1.02942 1.86477 1.23995 1.32618 1.84250 1.22574 0.90452 0.81880 0.73226 1.90747 1.66418 1.35951 1.43729 1.23048 0.92372 1.00988 1.09037 1.87504 1.04166 1.04847 1.98217 1.23293 0.93402 1.00176 1.07097 1.20960 0.88762 0.96935 1.07389 1.23317 0.90707 0.82960 0.72520 1.90627 1.74473 1.29752 1.46494 1.86734 1.22738 1.34570 1.82244 1.21757 0.74044 0.96796 1.00906 1.18679 1.13370 0.97817 0.94169 1.20533 0.98424 0.95342 0.95056 1.21294 1.04972 0.93894 0.98818 1.17686 0.87753 0.91997 0.90962 1.19657 1.27582 0.99329 1.01920 0.90174 1.25972 0.94472 0.99200 0.94737 1.69817 1.24869 1.35533 1.10637 0.86323 0.81313 0.80298 0.78595 1.18692 1.20210 1.18863 1.20962 1.09609 0.97299 0.97132 1.20386 0.97698 0.94869 0.95170 0.91569 0.87755 0.91578 0.85654 0.85658 0.88679 0.88697 0.86675 0.86648 0.92048 0.91978 0.89327 0.86232 0.90529 0.88703 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.66 10.57 -39.27 -0.41 -3.07 16 3 C 0.48 4.25 7.98 36.01 0.29 4.54 16 4 O -0.48 -5.86 15.61 -18.75 -0.29 -6.15 16 5 C -0.11 -0.72 6.54 36.01 0.24 -0.49 16 6 S -0.17 -1.66 20.88 -107.50 -2.24 -3.91 16 7 C -0.09 -0.83 5.23 37.15 0.19 -0.64 16 8 C -0.10 -1.08 5.82 -27.89 -0.16 -1.24 16 9 C 0.46 6.86 7.96 36.00 0.29 7.14 16 10 O -0.52 -8.66 15.73 -18.75 -0.29 -8.96 16 11 O -0.35 -6.17 10.20 -39.27 -0.40 -6.57 16 12 C 0.14 2.54 5.58 36.01 0.20 2.74 16 13 C -0.24 -5.21 5.54 -104.33 -0.58 -5.79 16 14 C -0.07 -1.73 9.67 -39.66 -0.38 -2.11 16 15 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 16 C 0.12 3.09 5.58 -106.82 -0.60 2.50 16 17 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 19 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.78 -19.70 10.95 55.55 0.61 -19.09 16 21 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 C -0.23 -5.54 9.80 -38.87 -0.38 -5.92 16 26 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 27 H 0.07 0.34 8.13 -51.93 -0.42 -0.09 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.13 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.84 8.10 -51.92 -0.42 0.42 16 33 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.07 8.07 -51.93 -0.42 0.66 16 37 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.12 3.12 6.16 -52.49 -0.32 2.79 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 41 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -30.70 383.51 -9.05 -39.75 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.78 Total: 4.04 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.98 Total: -14.81 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.40 Total: -24.74 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.24 Total: -3.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.70 -9.05 -39.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.004 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds