Wall clock time and date at job start Tue Mar 31 2020 21:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00088 * 2 1 4 4 H 1.48503 * 109.47188 * 269.99683 * 3 2 1 5 5 H 1.48504 * 109.47184 * 29.99678 * 3 2 1 6 6 H 1.48505 * 109.47627 * 149.99696 * 3 2 1 7 7 C 1.37881 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99796 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46964 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47003 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.53982 * 68.37904 * 11 10 9 13 13 O 1.42095 * 110.54412 * 291.62479 * 11 10 9 14 14 N 1.65598 * 104.44709 * 180.02562 * 11 10 9 15 15 C 1.34779 * 120.00076 * 65.00285 * 14 11 10 16 16 O 1.21280 * 120.00289 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99917 * 180.02562 * 15 14 11 18 18 N 1.46902 * 109.46949 * 186.11935 * 17 15 14 19 19 C 1.47914 * 111.00287 * 56.64033 * 18 17 15 20 20 C 1.54570 * 102.63570 * 149.15203 * 19 18 17 21 21 C 1.51573 * 102.85618 * 334.55425 * 20 19 18 22 22 C 1.37924 * 131.56273 * 196.05009 * 21 20 19 23 23 C 1.38307 * 120.08252 * 179.31232 * 22 21 20 24 24 C 1.38307 * 119.88221 * 0.02792 * 23 22 21 25 25 C 1.37910 * 120.26334 * 0.14092 * 24 23 22 26 26 C 1.38973 * 107.96037 * 15.72816 * 21 20 19 27 27 H 0.96991 * 119.99672 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47298 * 60.00449 * 9 7 2 29 29 H 1.08996 * 109.47459 * 300.00121 * 9 7 2 30 30 H 1.09002 * 109.46848 * 60.00048 * 10 9 7 31 31 H 1.08996 * 109.47029 * 300.00259 * 10 9 7 32 32 H 0.97002 * 120.00357 * 245.00332 * 14 11 10 33 33 H 1.08994 * 109.47603 * 66.11886 * 17 15 14 34 34 H 1.09005 * 109.47150 * 306.11593 * 17 15 14 35 35 H 1.09001 * 110.77521 * 267.47585 * 19 18 17 36 36 H 1.09000 * 110.77587 * 30.71889 * 19 18 17 37 37 H 1.08992 * 110.77924 * 216.18991 * 20 19 18 38 38 H 1.09006 * 110.68689 * 92.87278 * 20 19 18 39 39 H 1.08002 * 119.95406 * 359.33808 * 22 21 20 40 40 H 1.07991 * 120.05694 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.86292 * 180.16026 * 24 23 22 42 42 H 1.07996 * 119.89441 * 179.72606 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 16 5.8356 -2.6365 0.0009 12 8 6.3342 -2.1463 1.2380 13 8 6.3342 -2.1461 -1.2360 14 7 6.2488 -4.2401 0.0001 15 6 5.9393 -5.0153 -1.0582 16 8 5.3577 -4.5385 -2.0097 17 6 6.3148 -6.4747 -1.0587 18 7 6.0031 -7.0601 -2.3695 19 6 6.6900 -6.3262 -3.4546 20 6 6.9308 -7.4300 -4.5096 21 6 6.9561 -8.6948 -3.6746 22 6 7.4079 -9.9674 -3.9550 23 6 7.3271 -10.9590 -2.9943 24 6 6.7919 -10.6726 -1.7516 25 6 6.3356 -9.4026 -1.4673 26 6 6.4109 -8.3984 -2.4312 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6801 0.8912 29 1 3.8753 -0.6804 -0.8888 30 1 3.6586 -3.1502 -0.8893 31 1 3.6579 -3.1506 0.8907 32 1 6.7136 -4.6217 0.7612 33 1 5.7507 -6.9954 -0.2849 34 1 7.3819 -6.5754 -0.8603 35 1 6.0497 -5.5404 -3.8555 36 1 7.6347 -5.9114 -3.1032 37 1 7.8855 -7.2812 -5.0139 38 1 6.1130 -7.4593 -5.2298 39 1 7.8255 -10.1897 -4.9259 40 1 7.6806 -11.9555 -3.2144 41 1 6.7314 -11.4465 -1.0007 42 1 5.9147 -9.1866 -0.4965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776123245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:02 Heat of formation + Delta-G solvation = -63.986312 kcal Electronic energy + Delta-G solvation = -26699.346170 eV Core-core repulsion = 22772.007417 eV Total energy + Delta-G solvation = -3927.338753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.34346 -39.89219 -36.99802 -36.78867 -35.82005 -34.64512 -33.97725 -33.19433 -31.51681 -30.44511 -29.19548 -27.20851 -26.01912 -23.28458 -22.55706 -21.61278 -21.33435 -20.97121 -19.51639 -18.09199 -17.85147 -17.11007 -16.75899 -16.39165 -16.12825 -15.79997 -15.65114 -15.26347 -15.18328 -14.50588 -14.28425 -14.02834 -13.96035 -13.69461 -13.31454 -13.07932 -12.84709 -12.65767 -12.46224 -12.29581 -11.97056 -11.92029 -11.83974 -11.81388 -11.60829 -11.31618 -11.26601 -11.18510 -10.97848 -10.64733 -10.45197 -10.17209 -10.01024 -9.66233 -9.37501 -9.11564 -8.66542 -8.05911 -6.16561 -4.18126 0.30069 1.03265 1.07193 1.88681 2.46019 3.20116 3.26645 3.33608 3.36742 3.51639 3.77670 3.94718 4.18413 4.35326 4.39316 4.45495 4.60598 4.62317 4.71951 4.76603 4.83678 4.88828 5.07156 5.13292 5.14481 5.19069 5.43115 5.47077 5.50744 5.57485 5.65856 5.79478 5.95811 6.11866 6.22542 6.23224 6.34586 6.38402 6.57684 6.77572 6.86487 6.90411 7.30061 7.52805 8.36025 8.84653 9.42332 10.95785 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.002543 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.605218 B =11006.545683 C =11334.532721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.568 4.568 11 S 2.564 3.436 12 O -0.953 6.953 13 O -0.937 6.937 14 N -1.057 6.057 15 C 0.532 3.468 16 O -0.469 6.469 17 C 0.027 3.973 18 N -0.457 5.457 19 C 0.043 3.957 20 C -0.086 4.086 21 C -0.136 4.136 22 C -0.081 4.081 23 C -0.145 4.145 24 C -0.095 4.095 25 C -0.138 4.138 26 C 0.094 3.906 27 H 0.267 0.733 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.430 0.570 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.885 -21.920 -3.133 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.702 4.702 11 S 2.664 3.336 12 O -0.943 6.943 13 O -0.927 6.927 14 N -0.819 5.819 15 C 0.317 3.683 16 O -0.339 6.339 17 C -0.104 4.104 18 N -0.171 5.171 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.100 4.100 23 C -0.164 4.164 24 C -0.114 4.114 25 C -0.159 4.159 26 C -0.004 4.004 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.265 0.735 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.393 -20.605 -3.917 27.248 hybrid contribution 0.634 0.217 0.667 0.945 sum 18.027 -20.388 -3.250 27.408 Atomic orbital electron populations 1.69878 1.06187 1.27273 1.49857 1.24979 0.94837 0.99142 0.94122 0.86921 0.80624 0.83687 0.79174 1.19610 1.20720 1.18671 1.20808 0.87563 0.95021 1.52391 0.90305 1.19433 1.00090 0.86956 0.97976 1.30173 1.18351 1.09964 1.11718 1.06740 0.80208 0.72128 0.74537 1.93603 1.79577 1.76163 1.44997 1.93602 1.78516 1.76131 1.44499 1.55380 1.66954 1.32715 1.26894 1.20342 0.77629 0.89031 0.81315 1.90919 1.36564 1.74234 1.32151 1.22368 1.02320 0.92038 0.93712 1.60331 1.53481 1.00060 1.03232 1.23475 0.97898 0.97089 0.89748 1.21357 1.03073 0.90399 0.97475 1.20554 1.01760 0.95878 0.95716 1.20408 0.98894 0.91312 0.99360 1.21013 1.02376 0.99129 0.93851 1.20886 0.97738 0.95750 0.96992 1.20482 1.04250 0.92457 0.98739 1.19652 0.95128 0.90302 0.95311 0.92338 0.94872 0.95131 0.84409 0.85373 0.73538 0.85928 0.89809 0.86523 0.92288 0.89910 0.89083 0.86058 0.85862 0.85660 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.01 -0.12 4.05 -27.88 -0.11 -0.23 16 10 C -0.57 -10.61 5.82 37.16 0.22 -10.39 16 11 S 2.56 42.48 5.11 -107.50 -0.55 41.93 16 12 O -0.95 -17.24 18.08 -57.54 -1.04 -18.28 16 13 O -0.94 -18.70 17.04 -64.79 -1.10 -19.81 16 14 N -1.06 -11.77 5.60 31.22 0.17 -11.60 16 15 C 0.53 6.44 7.18 -10.98 -0.08 6.36 16 16 O -0.47 -7.55 12.43 -11.59 -0.14 -7.69 16 17 C 0.03 0.23 5.02 -4.97 -0.02 0.21 16 18 N -0.46 -4.97 4.92 -170.39 -0.84 -5.81 16 19 C 0.04 0.46 5.53 -2.44 -0.01 0.45 16 20 C -0.09 -0.76 7.03 -26.63 -0.19 -0.94 16 21 C -0.14 -1.30 6.23 -104.03 -0.65 -1.94 16 22 C -0.08 -0.65 10.03 -39.67 -0.40 -1.05 16 23 C -0.14 -1.05 10.06 -39.53 -0.40 -1.44 16 24 C -0.10 -0.69 10.02 -39.68 -0.40 -1.09 16 25 C -0.14 -1.15 9.53 -39.27 -0.37 -1.53 16 26 C 0.09 0.94 5.95 -83.41 -0.50 0.45 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 29 H 0.03 0.73 7.57 -51.93 -0.39 0.33 16 30 H 0.14 2.58 7.19 -51.92 -0.37 2.21 16 31 H 0.13 2.08 8.14 -51.93 -0.42 1.66 16 32 H 0.43 2.89 8.79 -34.47 -0.30 2.59 16 33 H 0.12 0.77 7.48 -51.93 -0.39 0.38 16 34 H 0.08 0.54 8.13 -51.93 -0.42 0.11 16 35 H 0.12 1.45 6.86 -51.93 -0.36 1.09 16 36 H 0.06 0.58 7.86 -51.93 -0.41 0.17 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.80 7.47 -52.49 -0.39 0.41 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -37.35 360.39 -10.84 -48.19 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.53 Total: 1.30 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -3.34 Total: -24.12 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.11 Total: -43.81 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -2.29 Total: -45.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 42.48 SS G_CDS: -0.55 Total: 41.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.35 -10.84 -48.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.796 kcal (2) G-P(sol) polarization free energy of solvation -37.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds