Wall clock time and date at job start Tue Mar 31 2020 21:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00088 * 2 1 4 4 H 1.48503 * 109.47188 * 269.99683 * 3 2 1 5 5 H 1.48504 * 109.47184 * 29.99678 * 3 2 1 6 6 H 1.48505 * 109.47627 * 149.99696 * 3 2 1 7 7 C 1.37881 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99796 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46964 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47003 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.53982 * 68.37904 * 11 10 9 13 13 O 1.42095 * 110.54412 * 291.62479 * 11 10 9 14 14 N 1.65598 * 104.44709 * 180.02562 * 11 10 9 15 15 C 1.34779 * 120.00076 * 65.00285 * 14 11 10 16 16 O 1.21280 * 120.00289 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99917 * 180.02562 * 15 14 11 18 18 N 1.46902 * 109.46949 * 186.11935 * 17 15 14 19 19 C 1.47914 * 111.00287 * 56.64033 * 18 17 15 20 20 C 1.54570 * 102.63570 * 149.15203 * 19 18 17 21 21 C 1.51573 * 102.85618 * 334.55425 * 20 19 18 22 22 C 1.37924 * 131.56273 * 196.05009 * 21 20 19 23 23 C 1.38307 * 120.08252 * 179.31232 * 22 21 20 24 24 C 1.38307 * 119.88221 * 0.02792 * 23 22 21 25 25 C 1.37910 * 120.26334 * 0.14092 * 24 23 22 26 26 C 1.38973 * 107.96037 * 15.72816 * 21 20 19 27 27 H 0.96991 * 119.99672 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47298 * 60.00449 * 9 7 2 29 29 H 1.08996 * 109.47459 * 300.00121 * 9 7 2 30 30 H 1.09002 * 109.46848 * 60.00048 * 10 9 7 31 31 H 1.08996 * 109.47029 * 300.00259 * 10 9 7 32 32 H 0.97002 * 120.00357 * 245.00332 * 14 11 10 33 33 H 1.08994 * 109.47603 * 66.11886 * 17 15 14 34 34 H 1.09005 * 109.47150 * 306.11593 * 17 15 14 35 35 H 1.09001 * 110.77521 * 267.47585 * 19 18 17 36 36 H 1.09000 * 110.77587 * 30.71889 * 19 18 17 37 37 H 1.08992 * 110.77924 * 216.18991 * 20 19 18 38 38 H 1.09006 * 110.68689 * 92.87278 * 20 19 18 39 39 H 1.08002 * 119.95406 * 359.33808 * 22 21 20 40 40 H 1.07991 * 120.05694 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.86292 * 180.16026 * 24 23 22 42 42 H 1.07996 * 119.89441 * 179.72606 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 16 5.8356 -2.6365 0.0009 12 8 6.3342 -2.1463 1.2380 13 8 6.3342 -2.1461 -1.2360 14 7 6.2488 -4.2401 0.0001 15 6 5.9393 -5.0153 -1.0582 16 8 5.3577 -4.5385 -2.0097 17 6 6.3148 -6.4747 -1.0587 18 7 6.0031 -7.0601 -2.3695 19 6 6.6900 -6.3262 -3.4546 20 6 6.9308 -7.4300 -4.5096 21 6 6.9561 -8.6948 -3.6746 22 6 7.4079 -9.9674 -3.9550 23 6 7.3271 -10.9590 -2.9943 24 6 6.7919 -10.6726 -1.7516 25 6 6.3356 -9.4026 -1.4673 26 6 6.4109 -8.3984 -2.4312 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6801 0.8912 29 1 3.8753 -0.6804 -0.8888 30 1 3.6586 -3.1502 -0.8893 31 1 3.6579 -3.1506 0.8907 32 1 6.7136 -4.6217 0.7612 33 1 5.7507 -6.9954 -0.2849 34 1 7.3819 -6.5754 -0.8603 35 1 6.0497 -5.5404 -3.8555 36 1 7.6347 -5.9114 -3.1032 37 1 7.8855 -7.2812 -5.0139 38 1 6.1130 -7.4593 -5.2298 39 1 7.8255 -10.1897 -4.9259 40 1 7.6806 -11.9555 -3.2144 41 1 6.7314 -11.4465 -1.0007 42 1 5.9147 -9.1866 -0.4965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776123245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:01 Heat of formation + Delta-G solvation = -92.453302 kcal Electronic energy + Delta-G solvation = -26700.580591 eV Core-core repulsion = 22772.007417 eV Total energy + Delta-G solvation = -3928.573174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10457 -40.79664 -38.35134 -37.51748 -37.27896 -35.98467 -35.68335 -33.85569 -33.53121 -31.06741 -29.82921 -28.08624 -27.82726 -23.93723 -23.57468 -23.10029 -22.21027 -21.74307 -20.77330 -19.56219 -18.98741 -18.63993 -17.54901 -17.47058 -17.07509 -16.77677 -16.63377 -16.40779 -16.22716 -16.17141 -15.37124 -15.33022 -14.85820 -14.71287 -14.59926 -13.93578 -13.88459 -13.80896 -13.72843 -13.42557 -13.30885 -13.21145 -13.12983 -13.05197 -12.93698 -12.50244 -12.34663 -12.26738 -12.11786 -11.95619 -11.73492 -11.72879 -11.52571 -11.21446 -10.86596 -10.80937 -9.68966 -8.70799 -8.38346 -6.44951 -1.06881 0.43430 0.50044 0.91098 1.29729 1.32005 1.32431 1.42874 2.28116 2.45483 2.54008 2.87596 2.95103 2.95803 3.15970 3.53199 3.70092 3.77611 3.93689 3.97405 3.98243 4.10012 4.17038 4.26264 4.28626 4.48583 4.50026 4.54154 4.67094 4.78725 4.95677 4.98155 4.99922 5.04310 5.10289 5.35781 5.43691 5.53560 5.59810 5.67592 5.72744 5.92759 6.13885 6.26354 6.37984 6.60729 7.19089 8.77412 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.002543 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.605218 B =11006.545683 C =11334.532721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.012 3.988 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.244 1.244 7 C -0.529 4.529 8 H 0.046 0.954 9 C -0.015 4.015 10 C -0.580 4.580 11 S 2.606 3.394 12 O -0.963 6.963 13 O -0.970 6.970 14 N -1.034 6.034 15 C 0.531 3.469 16 O -0.512 6.512 17 C 0.030 3.970 18 N -0.478 5.478 19 C 0.041 3.959 20 C -0.082 4.082 21 C -0.155 4.155 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.098 4.098 25 C -0.145 4.145 26 C 0.075 3.925 27 H 0.271 0.729 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.453 0.547 33 H 0.153 0.847 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.401 -23.608 -2.066 31.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.187 4.187 3 Si 0.750 3.250 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.568 4.568 8 H 0.064 0.936 9 C -0.054 4.054 10 C -0.713 4.713 11 S 2.703 3.297 12 O -0.954 6.954 13 O -0.960 6.960 14 N -0.803 5.803 15 C 0.318 3.682 16 O -0.384 6.384 17 C -0.100 4.100 18 N -0.193 5.193 19 C -0.085 4.085 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.108 4.108 23 C -0.165 4.165 24 C -0.116 4.116 25 C -0.165 4.165 26 C -0.023 4.023 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.149 0.851 31 H 0.167 0.833 32 H 0.293 0.707 33 H 0.171 0.829 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 19.913 -22.309 -2.814 30.035 hybrid contribution -0.153 0.543 0.327 0.652 sum 19.760 -21.766 -2.486 29.503 Atomic orbital electron populations 1.70013 1.07958 1.28487 1.51465 1.25916 0.95709 1.03183 0.93845 0.85982 0.80083 0.79094 0.79819 1.18858 1.19639 1.16748 1.21130 0.90171 0.93877 1.51666 0.93578 1.19374 0.97321 0.90531 0.98145 1.30184 1.21568 1.06923 1.12579 1.05241 0.78169 0.72933 0.73343 1.93586 1.78998 1.77439 1.45334 1.93564 1.78374 1.77890 1.46218 1.54809 1.66685 1.30846 1.27930 1.21079 0.76409 0.90361 0.80349 1.90923 1.38574 1.75068 1.33788 1.22538 1.04597 0.89048 0.93824 1.60309 1.54303 1.00754 1.03907 1.23370 0.97413 0.97039 0.90666 1.21314 1.03597 0.90006 0.97007 1.20736 1.02706 0.96500 0.95867 1.20680 0.98757 0.90983 1.00418 1.21370 1.01597 0.99927 0.93638 1.21247 0.96831 0.95947 0.97598 1.20769 1.04119 0.92463 0.99177 1.19811 0.96281 0.90056 0.96162 0.92040 0.93975 0.95282 0.85082 0.83265 0.70673 0.82916 0.86737 0.89270 0.91797 0.88415 0.89737 0.84595 0.83626 0.83233 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.93 44.20 27.47 68.60 1.88 46.09 16 4 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.24 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.53 -30.63 9.66 25.60 0.25 -30.38 16 8 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 9 C -0.01 -0.69 4.05 29.85 0.12 -0.57 16 10 C -0.58 -21.60 5.82 71.98 0.42 -21.18 16 11 S 2.61 82.84 5.11 -56.49 -0.29 82.55 16 12 O -0.96 -32.73 18.08 -127.65 -2.31 -35.04 16 13 O -0.97 -38.15 17.04 -120.71 -2.06 -40.21 16 14 N -1.03 -20.75 5.60 -173.53 -0.97 -21.72 16 15 C 0.53 12.10 7.18 87.66 0.63 12.73 16 16 O -0.51 -16.59 12.43 13.37 0.17 -16.43 16 17 C 0.03 0.46 5.02 85.56 0.43 0.88 16 18 N -0.48 -9.93 4.92 -692.99 -3.41 -13.33 16 19 C 0.04 0.88 5.53 86.64 0.48 1.35 16 20 C -0.08 -1.44 7.03 30.66 0.22 -1.23 16 21 C -0.16 -2.78 6.23 -19.48 -0.12 -2.90 16 22 C -0.09 -1.28 10.03 22.21 0.22 -1.06 16 23 C -0.15 -1.72 10.06 22.30 0.22 -1.49 16 24 C -0.10 -1.12 10.02 22.21 0.22 -0.90 16 25 C -0.14 -2.03 9.53 22.47 0.21 -1.81 16 26 C 0.07 1.37 5.95 38.28 0.23 1.60 16 27 H 0.27 15.68 8.31 -92.72 -0.77 14.91 16 28 H 0.04 1.92 7.20 -2.39 -0.02 1.90 16 29 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 30 H 0.13 5.05 7.19 -2.39 -0.02 5.03 16 31 H 0.15 4.75 8.14 -2.39 -0.02 4.73 16 32 H 0.45 4.56 8.79 -96.74 -0.85 3.71 16 33 H 0.15 1.36 7.48 -2.39 -0.02 1.34 16 34 H 0.11 1.05 8.13 -2.38 -0.02 1.04 16 35 H 0.09 2.37 6.86 -2.39 -0.02 2.36 16 36 H 0.06 1.23 7.86 -2.39 -0.02 1.22 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.15 0.98 8.06 -2.92 -0.02 0.96 16 41 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 42 H 0.14 1.36 7.47 -2.91 -0.02 1.33 16 Total: -1.00 -83.18 360.39 -2.54 -85.72 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.15 Total: 14.52 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 3.99 Total: -43.79 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -4.08 Total: -93.42 kcal Atomic # 8 Polarization: -87.47 SS G_CDS: -4.20 Total: -91.67 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Atomic # 16 Polarization: 82.84 SS G_CDS: -0.29 Total: 82.55 kcal Total: -83.18 -2.54 -85.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.732 kcal (2) G-P(sol) polarization free energy of solvation -83.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds