Wall clock time and date at job start Tue Mar 31 2020 20:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48504 * 109.47384 * 240.00227 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00129 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37312 * 119.99460 * 0.27649 * 7 2 1 10 10 C 1.36490 * 126.06289 * 179.72506 * 9 7 2 11 11 C 1.35709 * 107.50800 * 179.97438 * 10 9 7 12 12 N 1.40494 * 126.09110 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00112 * 180.02562 * 12 11 10 14 14 O 1.21549 * 119.99944 * 359.97438 * 13 12 11 15 15 C 1.48148 * 120.00002 * 179.97438 * 13 12 11 16 16 C 1.39117 * 119.69858 * 179.97438 * 15 13 12 17 17 C 1.39224 * 118.98081 * 180.02562 * 16 15 13 18 18 O 1.35749 * 120.81469 * 179.97438 * 17 16 15 19 19 C 1.42896 * 117.00359 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47344 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47210 * 300.00528 * 20 19 18 22 22 F 1.39899 * 109.46884 * 60.00604 * 20 19 18 23 23 C 1.39224 * 118.37484 * 359.97438 * 17 16 15 24 24 C 1.38305 * 119.28838 * 0.02562 * 23 17 16 25 25 N 1.31614 * 120.97330 * 359.72731 * 24 23 17 26 26 C 1.40677 * 107.82262 * 359.97438 * 11 10 9 27 27 N 1.30901 * 108.38552 * 359.75564 * 26 11 10 28 28 H 0.97005 * 119.99961 * 359.97438 * 1 2 3 29 29 H 1.08004 * 126.24704 * 359.92018 * 10 9 7 30 30 H 0.97006 * 119.99457 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.51301 * 0.02562 * 16 15 13 32 32 H 1.09003 * 109.47356 * 300.00402 * 19 18 17 33 33 H 1.08999 * 109.46501 * 59.99905 * 19 18 17 34 34 H 1.09003 * 109.46872 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.35283 * 180.02562 * 23 17 16 36 36 H 1.08002 * 119.51206 * 179.97438 * 24 23 17 37 37 H 1.08000 * 125.80708 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.1007 1.6965 -1.2125 5 1 1.2819 2.7465 0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3928 -0.0068 10 6 1.8750 -3.6403 -0.0134 11 6 0.8577 -4.5385 -0.0175 12 7 0.9887 -5.9373 -0.0252 13 6 -0.1105 -6.7171 -0.0292 14 8 -1.2152 -6.2102 -0.0257 15 6 0.0277 -8.1921 -0.0378 16 6 -1.1112 -8.9910 -0.0414 17 6 -0.9640 -10.3754 -0.0490 18 8 -2.0498 -11.1902 -0.0521 19 6 -1.8046 -12.5979 -0.0605 20 6 -3.1381 -13.3479 -0.0623 21 9 -3.8658 -13.0081 1.0832 22 9 -3.8698 -12.9954 -1.2013 23 6 0.3241 -10.9038 -0.0533 24 6 1.4079 -10.0446 -0.0493 25 7 1.2376 -8.7396 -0.0470 26 6 -0.3515 -3.8195 -0.0128 27 7 -0.0715 -2.5409 -0.0008 28 1 -0.4850 0.8401 0.0004 29 1 2.9302 -3.8706 -0.0158 30 1 1.8704 -6.3418 -0.0284 31 1 -2.0944 -8.5442 -0.0383 32 1 -1.2372 -12.8626 -0.9528 33 1 -1.2348 -12.8727 0.8271 34 1 -2.9510 -14.4218 -0.0683 35 1 0.4753 -11.9732 -0.0596 36 1 2.4087 -10.4506 -0.0522 37 1 -1.3422 -4.2495 -0.0149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778251516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:37 Heat of formation + Delta-G solvation = -44.599152 kcal Electronic energy + Delta-G solvation = -27136.754261 eV Core-core repulsion = 22552.875468 eV Total energy + Delta-G solvation = -4583.878793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.44060 -47.47092 -41.06891 -39.85993 -38.98908 -37.93811 -34.27105 -33.18295 -32.28086 -31.66445 -30.37301 -30.19579 -27.83065 -25.50571 -24.57093 -23.67392 -23.27706 -21.17017 -20.67014 -19.44854 -19.02613 -18.04932 -17.97096 -17.56474 -17.34469 -16.67825 -16.20172 -15.91296 -15.86864 -15.42062 -14.97899 -14.87155 -14.79046 -14.30356 -14.07967 -13.96087 -13.81457 -13.62440 -13.52573 -13.01396 -13.00585 -12.86505 -12.16154 -11.94638 -11.65911 -11.59768 -11.41177 -11.22874 -10.96244 -10.54465 -10.15970 -10.04863 -9.49407 -9.32476 -9.27825 -9.13992 -8.79589 -8.04307 -6.66914 -6.54019 -4.20551 0.47241 1.01041 2.19111 2.77581 3.02500 3.06291 3.10548 3.11587 3.49158 3.53154 3.57329 3.77643 3.85704 3.90184 4.11286 4.20401 4.23908 4.46937 4.48487 4.52128 4.67556 4.80562 4.84438 5.04176 5.23665 5.34800 5.50788 5.70907 6.09714 6.28435 6.48965 6.66455 6.90808 6.96951 7.11658 7.24727 7.60450 7.87483 8.20514 8.29960 8.62602 8.84044 9.39160 9.68272 10.41830 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.001867 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.181291 B =14990.299800 C =15663.664847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.322 4.322 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.080 4.080 11 C -0.063 4.063 12 N -0.594 5.594 13 C 0.547 3.453 14 O -0.527 6.527 15 C 0.136 3.864 16 C -0.142 4.142 17 C 0.163 3.837 18 O -0.295 6.295 19 C 0.002 3.998 20 C 0.274 3.726 21 F -0.196 7.196 22 F -0.196 7.196 23 C -0.253 4.253 24 C 0.138 3.862 25 N -0.483 5.483 26 C -0.030 4.030 27 N -0.260 5.260 28 H 0.276 0.724 29 H 0.148 0.852 30 H 0.408 0.592 31 H 0.159 0.841 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -27.681 -0.151 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.454 4.454 8 H 0.134 0.866 9 N 0.092 4.908 10 C -0.231 4.231 11 C -0.169 4.169 12 N -0.235 5.235 13 C 0.331 3.669 14 O -0.403 6.403 15 C -0.002 4.002 16 C -0.164 4.164 17 C 0.110 3.890 18 O -0.206 6.206 19 C -0.074 4.074 20 C 0.220 3.780 21 F -0.177 7.177 22 F -0.177 7.177 23 C -0.274 4.274 24 C -0.021 4.021 25 N -0.198 5.198 26 C -0.205 4.205 27 N -0.091 5.091 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.243 0.757 31 H 0.176 0.824 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.183 0.817 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.754 -25.314 -0.141 25.325 hybrid contribution 0.668 -1.257 -0.016 1.424 sum 1.423 -26.571 -0.157 26.609 Atomic orbital electron populations 1.70209 1.06131 1.28131 1.35063 1.25655 0.95719 1.00296 0.95497 0.85887 0.79133 0.79598 0.79471 1.19153 1.20142 1.19151 1.19842 0.91678 0.80534 1.53389 0.86585 1.44560 1.04078 1.03317 1.38869 1.21276 0.96912 0.85254 1.19642 1.17283 0.94462 0.81022 1.24155 1.42289 1.08657 1.04349 1.68211 1.17512 0.84886 0.84190 0.80306 1.90705 1.25642 1.73172 1.50823 1.21157 0.88126 0.94865 0.96034 1.21419 1.01953 0.89859 1.03142 1.19109 0.85852 0.90394 0.93691 1.86156 1.30204 1.15987 1.88254 1.24128 0.97457 0.80589 1.05237 1.22014 0.84595 0.99400 0.71962 1.93051 1.79760 1.94342 1.50553 1.93050 1.79565 1.94054 1.51033 1.22317 0.92606 1.02053 1.10406 1.22576 0.98905 0.87924 0.92742 1.67670 1.24680 1.13960 1.13485 1.24152 0.98049 0.90757 1.07573 1.78260 0.90095 1.15027 1.25733 0.91374 0.83492 0.75678 0.82377 0.88443 0.88450 0.84918 0.84131 0.81735 0.80602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.66 11.81 55.50 0.66 -21.01 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 19.04 29.55 -169.99 -5.02 14.02 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.32 -8.59 10.25 -14.82 -0.15 -8.74 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.33 16 9 N -0.14 -3.92 3.74 -11.40 -0.04 -3.97 16 10 C -0.08 -1.92 11.49 -16.38 -0.19 -2.10 16 11 C -0.06 -1.51 6.90 -83.87 -0.58 -2.09 16 12 N -0.59 -11.53 5.45 -10.77 -0.06 -11.59 16 13 C 0.55 10.49 7.78 -12.19 -0.09 10.40 16 14 O -0.53 -11.71 13.47 5.32 0.07 -11.64 16 15 C 0.14 2.06 6.75 -83.05 -0.56 1.50 16 16 C -0.14 -1.96 9.60 -38.89 -0.37 -2.33 16 17 C 0.16 1.75 6.73 -38.85 -0.26 1.49 16 18 O -0.29 -2.95 10.04 -18.96 -0.19 -3.15 16 19 C 0.00 0.01 4.99 37.16 0.19 0.20 16 20 C 0.27 1.37 5.63 37.16 0.21 1.58 16 21 F -0.20 -1.65 17.28 2.25 0.04 -1.61 16 22 F -0.20 -1.65 17.28 2.25 0.04 -1.61 16 23 C -0.25 -2.00 9.12 -39.19 -0.36 -2.36 16 24 C 0.14 1.25 11.17 -17.62 -0.20 1.05 16 25 N -0.48 -6.24 9.54 -9.88 -0.09 -6.33 16 26 C -0.03 -0.80 10.85 -17.03 -0.18 -0.98 16 27 N -0.26 -7.68 10.39 30.81 0.32 -7.36 16 28 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.15 2.95 8.06 -52.48 -0.42 2.53 16 30 H 0.41 6.68 8.15 -40.82 -0.33 6.35 16 31 H 0.16 2.30 7.64 -52.49 -0.40 1.90 16 32 H 0.10 0.25 7.71 -51.93 -0.40 -0.15 16 33 H 0.10 0.25 7.71 -51.93 -0.40 -0.15 16 34 H 0.13 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.14 0.55 6.45 -52.49 -0.34 0.21 16 36 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.18 4.66 5.92 -52.49 -0.31 4.35 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -36.32 340.58 -4.80 -41.12 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -3.00 Total: 9.29 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.65 Total: -1.30 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.78 Total: -50.25 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.12 Total: -14.78 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.32 -4.80 -41.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778251516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.483 kcal (2) G-P(sol) polarization free energy of solvation -36.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds