Wall clock time and date at job start Tue Mar 31 2020 20:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48504 * 109.47384 * 240.00227 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00129 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37312 * 119.99460 * 0.27649 * 7 2 1 10 10 C 1.36490 * 126.06289 * 179.72506 * 9 7 2 11 11 C 1.35709 * 107.50800 * 179.97438 * 10 9 7 12 12 N 1.40494 * 126.09110 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00112 * 180.02562 * 12 11 10 14 14 O 1.21549 * 119.99944 * 359.97438 * 13 12 11 15 15 C 1.48148 * 120.00002 * 179.97438 * 13 12 11 16 16 C 1.39117 * 119.69858 * 179.97438 * 15 13 12 17 17 C 1.39224 * 118.98081 * 180.02562 * 16 15 13 18 18 O 1.35749 * 120.81469 * 179.97438 * 17 16 15 19 19 C 1.42896 * 117.00359 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47344 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47210 * 300.00528 * 20 19 18 22 22 F 1.39899 * 109.46884 * 60.00604 * 20 19 18 23 23 C 1.39224 * 118.37484 * 359.97438 * 17 16 15 24 24 C 1.38305 * 119.28838 * 0.02562 * 23 17 16 25 25 N 1.31614 * 120.97330 * 359.72731 * 24 23 17 26 26 C 1.40677 * 107.82262 * 359.97438 * 11 10 9 27 27 N 1.30901 * 108.38552 * 359.75564 * 26 11 10 28 28 H 0.97005 * 119.99961 * 359.97438 * 1 2 3 29 29 H 1.08004 * 126.24704 * 359.92018 * 10 9 7 30 30 H 0.97006 * 119.99457 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.51301 * 0.02562 * 16 15 13 32 32 H 1.09003 * 109.47356 * 300.00402 * 19 18 17 33 33 H 1.08999 * 109.46501 * 59.99905 * 19 18 17 34 34 H 1.09003 * 109.46872 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.35283 * 180.02562 * 23 17 16 36 36 H 1.08002 * 119.51206 * 179.97438 * 24 23 17 37 37 H 1.08000 * 125.80708 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.1007 1.6965 -1.2125 5 1 1.2819 2.7465 0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3928 -0.0068 10 6 1.8750 -3.6403 -0.0134 11 6 0.8577 -4.5385 -0.0175 12 7 0.9887 -5.9373 -0.0252 13 6 -0.1105 -6.7171 -0.0292 14 8 -1.2152 -6.2102 -0.0257 15 6 0.0277 -8.1921 -0.0378 16 6 -1.1112 -8.9910 -0.0414 17 6 -0.9640 -10.3754 -0.0490 18 8 -2.0498 -11.1902 -0.0521 19 6 -1.8046 -12.5979 -0.0605 20 6 -3.1381 -13.3479 -0.0623 21 9 -3.8658 -13.0081 1.0832 22 9 -3.8698 -12.9954 -1.2013 23 6 0.3241 -10.9038 -0.0533 24 6 1.4079 -10.0446 -0.0493 25 7 1.2376 -8.7396 -0.0470 26 6 -0.3515 -3.8195 -0.0128 27 7 -0.0715 -2.5409 -0.0008 28 1 -0.4850 0.8401 0.0004 29 1 2.9302 -3.8706 -0.0158 30 1 1.8704 -6.3418 -0.0284 31 1 -2.0944 -8.5442 -0.0383 32 1 -1.2372 -12.8626 -0.9528 33 1 -1.2348 -12.8727 0.8271 34 1 -2.9510 -14.4218 -0.0683 35 1 0.4753 -11.9732 -0.0596 36 1 2.4087 -10.4506 -0.0522 37 1 -1.3422 -4.2495 -0.0149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778251516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:36 Heat of formation + Delta-G solvation = -71.900998 kcal Electronic energy + Delta-G solvation = -27137.938158 eV Core-core repulsion = 22552.875468 eV Total energy + Delta-G solvation = -4585.062689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.91583 -47.98136 -42.07254 -41.53483 -40.28981 -39.09675 -36.02923 -35.02193 -33.02814 -32.69301 -32.15281 -30.91967 -29.67169 -27.10060 -25.82070 -24.49191 -24.04037 -22.89103 -22.08656 -21.26248 -20.08291 -19.27711 -18.53050 -18.50724 -18.17391 -17.64500 -17.41885 -17.07785 -16.83696 -16.69530 -16.27507 -16.26055 -15.96216 -15.44919 -15.23159 -15.00151 -14.86062 -14.77447 -14.66520 -14.37283 -14.32585 -13.57704 -13.48097 -13.33358 -12.89331 -12.87411 -12.66496 -12.62563 -12.12979 -11.99488 -11.89481 -11.22725 -11.02254 -10.83777 -10.68135 -10.38351 -10.11670 -10.06965 -8.56104 -8.47189 -6.24870 -0.49992 0.18359 1.23891 1.40181 1.54911 1.56274 1.58654 1.85289 2.04635 2.25004 2.42167 2.77384 2.82826 2.83882 3.09193 3.21818 3.30119 3.48940 3.54505 3.78215 3.90992 3.97450 4.12548 4.23715 4.37511 4.42328 4.50354 4.56847 4.71417 4.86903 4.99072 5.04698 5.27093 5.34033 5.39682 5.94308 5.99555 6.26669 6.54395 6.70847 6.82964 7.24932 7.44498 7.64946 8.52055 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.001867 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.181291 B =14990.299800 C =15663.664847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.008 4.008 3 Si 1.022 2.978 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.165 5.165 10 C -0.076 4.076 11 C -0.051 4.051 12 N -0.590 5.590 13 C 0.547 3.453 14 O -0.567 6.567 15 C 0.114 3.886 16 C -0.163 4.163 17 C 0.162 3.838 18 O -0.323 6.323 19 C -0.011 4.011 20 C 0.261 3.739 21 F -0.221 7.221 22 F -0.221 7.221 23 C -0.220 4.220 24 C 0.140 3.860 25 N -0.496 5.496 26 C -0.058 4.058 27 N -0.308 5.308 28 H 0.277 0.723 29 H 0.190 0.810 30 H 0.424 0.576 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.192 0.808 35 H 0.195 0.805 36 H 0.212 0.788 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.318 -31.195 -0.179 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.484 4.484 8 H 0.161 0.839 9 N 0.067 4.933 10 C -0.227 4.227 11 C -0.157 4.157 12 N -0.234 5.234 13 C 0.333 3.667 14 O -0.446 6.446 15 C -0.022 4.022 16 C -0.185 4.185 17 C 0.109 3.891 18 O -0.235 6.235 19 C -0.086 4.086 20 C 0.208 3.792 21 F -0.203 7.203 22 F -0.203 7.203 23 C -0.240 4.240 24 C -0.019 4.019 25 N -0.212 5.212 26 C -0.233 4.233 27 N -0.140 5.140 28 H 0.087 0.913 29 H 0.207 0.793 30 H 0.263 0.737 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.208 0.792 35 H 0.212 0.788 36 H 0.229 0.771 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.304 -28.900 -0.169 29.219 hybrid contribution -0.462 -0.560 -0.009 0.726 sum 3.842 -29.459 -0.178 29.709 Atomic orbital electron populations 1.70401 1.08494 1.29266 1.37024 1.26945 0.96506 1.04478 0.94067 0.84618 0.77509 0.73506 0.80338 1.17626 1.20328 1.17623 1.20637 0.93070 0.80775 1.53938 0.83929 1.44865 1.03629 1.04814 1.39999 1.21984 0.98789 0.84072 1.17809 1.17367 0.93214 0.83171 1.21989 1.42202 1.09818 1.02488 1.68850 1.18263 0.83987 0.86265 0.78180 1.90673 1.27207 1.74682 1.52044 1.20362 0.89741 0.92156 0.99956 1.21302 1.00487 0.92026 1.04728 1.19081 0.87471 0.89252 0.93290 1.86134 1.30647 1.18717 1.88023 1.24669 0.98130 0.77495 1.08264 1.22875 0.83822 1.02442 0.70064 1.92998 1.80532 1.94770 1.51961 1.92998 1.80344 1.94495 1.52422 1.22855 0.90388 1.04614 1.06179 1.23418 1.01373 0.86421 0.90733 1.67605 1.23103 1.16369 1.14116 1.24175 0.98956 0.90982 1.09146 1.78153 0.92021 1.16310 1.27549 0.91321 0.79263 0.73731 0.84989 0.85272 0.85277 0.79178 0.78754 0.77113 0.81541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.51 11.81 21.66 0.26 -48.26 16 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 3 Si 1.02 39.09 29.55 68.60 2.03 41.12 16 4 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 5 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 7 C -0.35 -19.03 10.25 84.02 0.86 -18.16 16 8 H 0.14 6.60 7.83 -2.91 -0.02 6.58 16 9 N -0.16 -9.41 3.74 -189.99 -0.71 -10.12 16 10 C -0.08 -3.67 11.49 83.38 0.96 -2.72 16 11 C -0.05 -2.51 6.90 37.76 0.26 -2.25 16 12 N -0.59 -23.33 5.45 -306.26 -1.67 -25.00 16 13 C 0.55 21.98 7.78 86.88 0.68 22.65 16 14 O -0.57 -27.26 13.47 -3.87 -0.05 -27.31 16 15 C 0.11 3.50 6.75 41.84 0.28 3.78 16 16 C -0.16 -4.63 9.60 22.72 0.22 -4.42 16 17 C 0.16 3.17 6.73 22.74 0.15 3.32 16 18 O -0.32 -5.88 10.04 -90.75 -0.91 -6.79 16 19 C -0.01 -0.06 4.99 71.98 0.36 0.30 16 20 C 0.26 1.85 5.63 71.98 0.41 2.26 16 21 F -0.22 -3.44 17.28 44.97 0.78 -2.67 16 22 F -0.22 -3.44 17.28 44.97 0.78 -2.67 16 23 C -0.22 -2.36 9.12 22.52 0.21 -2.15 16 24 C 0.14 1.87 11.17 84.74 0.95 2.82 16 25 N -0.50 -11.76 9.54 -185.16 -1.77 -13.52 16 26 C -0.06 -3.30 10.85 85.43 0.93 -2.37 16 27 N -0.31 -19.24 10.39 -56.45 -0.59 -19.82 16 28 H 0.28 15.01 8.31 -92.70 -0.77 14.24 16 29 H 0.19 7.23 8.06 -2.91 -0.02 7.21 16 30 H 0.42 13.62 8.15 -92.70 -0.76 12.86 16 31 H 0.13 4.30 7.64 -2.91 -0.02 4.28 16 32 H 0.13 -0.11 7.71 -2.39 -0.02 -0.12 16 33 H 0.13 -0.11 7.71 -2.39 -0.02 -0.12 16 34 H 0.19 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H 0.20 -0.04 6.45 -2.91 -0.02 -0.06 16 36 H 0.21 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.17 9.65 5.92 -2.91 -0.02 9.64 16 Total: -1.00 -89.24 340.58 5.27 -83.97 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.41 Total: 27.98 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.72 Total: 3.09 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.48 Total: -116.72 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.96 Total: -34.10 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.55 Total: -5.33 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -89.24 5.27 -83.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778251516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.068 kcal (2) G-P(sol) polarization free energy of solvation -89.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds