Wall clock time and date at job start Tue Mar 31 2020 20:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47108 * 2 1 4 4 C 1.50703 * 109.47075 * 240.00149 * 2 1 3 5 5 H 1.08001 * 119.99672 * 265.36091 * 4 2 1 6 6 C 1.37868 * 120.00424 * 85.36602 * 4 2 1 7 7 N 1.31520 * 120.00354 * 185.05583 * 6 4 2 8 8 Si 1.86805 * 119.99863 * 5.05472 * 6 4 2 9 9 H 1.48500 * 109.47140 * 94.69118 * 8 6 4 10 10 H 1.48501 * 109.47162 * 214.68889 * 8 6 4 11 11 H 1.48497 * 109.46922 * 334.68740 * 8 6 4 12 12 O 1.45199 * 109.47140 * 119.99856 * 2 1 3 13 13 C 1.34220 * 117.00203 * 270.00080 * 12 2 1 14 14 O 1.20830 * 119.99957 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00320 * 179.72347 * 13 12 2 16 16 C 1.52995 * 109.47042 * 180.27336 * 15 13 12 17 17 C 1.50705 * 109.47042 * 179.97438 * 16 15 13 18 18 C 1.38258 * 120.00078 * 98.15574 * 17 16 15 19 19 C 1.38212 * 120.00123 * 179.81283 * 18 17 16 20 20 C 1.38259 * 119.99767 * 0.39692 * 19 18 17 21 21 N 1.48019 * 119.99754 * 179.83125 * 20 19 18 22 22 O 1.21797 * 119.99693 * 180.02562 * 21 20 19 23 23 O 1.21794 * 120.00217 * 0.02669 * 21 20 19 24 24 C 1.38217 * 119.99998 * 359.85821 * 20 19 18 25 25 C 1.38217 * 119.99848 * 278.43435 * 17 16 15 26 26 N 1.48018 * 120.00250 * 359.97438 * 25 17 16 27 27 O 1.21792 * 119.99988 * 185.80945 * 26 25 17 28 28 O 1.21801 * 119.99519 * 5.80529 * 26 25 17 29 29 H 1.09004 * 109.47289 * 65.00886 * 1 2 3 30 30 H 1.09003 * 109.47462 * 185.00786 * 1 2 3 31 31 H 1.08999 * 109.47153 * 305.01320 * 1 2 3 32 32 H 0.96994 * 119.99896 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46645 * 300.27619 * 15 13 12 34 34 H 1.08996 * 109.46883 * 60.27679 * 15 13 12 35 35 H 1.08997 * 109.47631 * 299.99679 * 16 15 13 36 36 H 1.08997 * 109.47447 * 60.00710 * 16 15 13 37 37 H 1.08000 * 119.99439 * 0.02562 * 18 17 16 38 38 H 1.07996 * 120.00414 * 180.22995 * 19 18 17 39 39 H 1.07995 * 119.99605 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2836 -1.7597 -1.1834 6 6 2.1711 -0.0209 -2.4163 7 7 2.5137 -0.6608 -3.5130 8 14 1.8726 1.8225 -2.4652 9 1 3.1637 2.5376 -2.3012 10 1 1.2648 2.1911 -3.7690 11 1 0.9520 2.2042 -1.3643 12 8 2.0139 -0.6844 1.1856 13 6 2.2170 0.0640 2.2811 14 8 1.9981 1.2519 2.2503 15 6 2.7128 -0.5781 3.5512 16 6 2.8521 0.4871 4.6404 17 6 3.3472 -0.1551 5.9107 18 6 4.6902 -0.1011 6.2347 19 6 5.1437 -0.6868 7.4016 20 6 4.2556 -1.3337 8.2408 21 7 4.7419 -1.9641 9.4886 22 8 3.9596 -2.5344 10.2277 23 8 5.9242 -1.9126 9.7764 24 6 2.9138 -1.3922 7.9143 25 6 2.4596 -0.8031 6.7490 26 7 1.0227 -0.8658 6.3993 27 8 0.2247 -1.3426 7.1862 28 8 0.6383 -0.4403 5.3247 29 1 -0.3634 0.4342 -0.9315 30 1 -0.3634 -1.0237 0.0897 31 1 -0.3633 0.5896 0.8417 32 1 2.6111 -0.1757 -4.3472 33 1 2.0021 -1.3384 3.8751 34 1 3.6827 -1.0411 3.3696 35 1 3.5628 1.2474 4.3165 36 1 1.8822 0.9501 4.8221 37 1 5.3844 0.4017 5.5776 38 1 6.1922 -0.6414 7.6566 39 1 2.2202 -1.8979 8.5696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781803231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:30 Heat of formation + Delta-G solvation = -60.974800 kcal Electronic energy + Delta-G solvation = -28647.354440 eV Core-core repulsion = 24141.560311 eV Total energy + Delta-G solvation = -4505.794129 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.07359 -42.64509 -40.47783 -39.74541 -37.28734 -37.19954 -36.17937 -34.86117 -33.16493 -32.99704 -31.63060 -30.52810 -27.66338 -27.40417 -25.41103 -24.80382 -23.70905 -22.65634 -21.39320 -20.67722 -19.72462 -19.53046 -18.95367 -18.36146 -18.26501 -18.06355 -17.62317 -16.90026 -16.78824 -16.34162 -15.72245 -15.70146 -15.21048 -14.54816 -14.23145 -13.96270 -13.36230 -13.09983 -13.02987 -12.67857 -12.53032 -12.26066 -12.20324 -12.09831 -11.93749 -11.85709 -11.73856 -11.70021 -11.43185 -11.22492 -11.03392 -10.96070 -10.76896 -10.63745 -10.44864 -10.09725 -9.78296 -9.62481 -9.16428 -8.74950 -6.30739 -4.34084 -1.14743 -0.83690 0.36013 0.39323 0.66512 0.86585 2.10937 2.75036 3.11870 3.19110 3.25338 3.26801 3.30755 3.45081 3.48217 3.72059 3.79571 4.22223 4.37370 4.41445 4.55162 4.61559 4.68118 4.93657 5.01106 5.05689 5.20378 5.49972 5.54150 5.59534 5.62791 5.93195 6.14556 6.42436 6.47813 6.65305 6.94891 7.11259 7.11977 7.30006 7.47022 8.15903 8.53326 8.78587 9.27753 10.80835 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.002424 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.028703 B =11549.203636 C =12162.661801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.186 3.814 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.085 0.915 6 C 0.081 3.919 7 N -0.884 5.884 8 Si 0.866 3.134 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.255 1.255 12 O -0.345 6.345 13 C 0.460 3.540 14 O -0.523 6.523 15 C -0.105 4.105 16 C -0.098 4.098 17 C 0.040 3.960 18 C -0.110 4.110 19 C -0.004 4.004 20 C -0.053 4.053 21 N 0.028 4.972 22 O -0.145 6.145 23 O -0.143 6.143 24 C 0.010 3.990 25 C -0.045 4.045 26 N 0.025 4.975 27 O -0.146 6.146 28 O -0.126 6.126 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.270 0.730 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 1.035 23.857 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.133 3.867 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.103 0.897 6 C -0.123 4.123 7 N -0.521 5.521 8 Si 0.691 3.309 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.179 1.179 12 O -0.260 6.260 13 C 0.303 3.697 14 O -0.413 6.413 15 C -0.143 4.143 16 C -0.134 4.134 17 C 0.038 3.962 18 C -0.129 4.129 19 C -0.023 4.023 20 C -0.137 4.137 21 N 0.551 4.449 22 O -0.362 6.362 23 O -0.360 6.360 24 C -0.009 4.009 25 C -0.129 4.129 26 N 0.547 4.453 27 O -0.362 6.362 28 O -0.344 6.344 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.193 0.807 38 H 0.191 0.809 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.730 1.717 23.142 23.902 hybrid contribution -0.379 0.781 0.087 0.872 sum 5.351 2.498 23.229 23.968 Atomic orbital electron populations 1.22316 0.97569 1.01167 1.00400 1.21003 0.91413 0.94064 0.80235 0.93523 1.20777 1.45825 0.98815 0.90589 0.89686 1.24827 0.93886 0.98367 0.95175 1.69858 1.46132 1.36359 0.99710 0.87015 0.79658 0.85767 0.78414 1.19849 1.20558 1.17935 1.86585 1.75455 1.43222 1.20749 1.22981 0.74814 0.85926 0.85956 1.90602 1.49056 1.16906 1.84785 1.21178 1.04107 0.98666 0.90358 1.21066 1.05931 0.98080 0.88370 1.20460 0.92588 0.88479 0.94668 1.21346 0.94194 1.00595 0.96804 1.21537 1.01751 0.88389 0.90659 1.20803 0.94161 1.08158 0.90578 1.43328 1.00992 0.99136 1.01420 1.94613 1.52965 1.41923 1.46719 1.94585 0.99821 1.63706 1.77934 1.20655 0.94665 0.91844 0.93774 1.20708 0.83039 1.10136 0.99032 1.43299 1.02155 0.99136 1.00741 1.94595 1.49475 1.45407 1.46747 1.94627 1.82705 1.47285 1.09758 0.91794 0.92469 0.94876 0.92017 0.87767 0.87850 0.87845 0.86035 0.80669 0.80861 0.80035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.12 37.15 0.34 -3.11 16 2 C 0.19 4.52 2.09 -27.89 -0.06 4.46 16 3 H 0.05 1.18 4.72 -51.93 -0.24 0.93 16 4 C -0.52 -14.51 9.25 -34.44 -0.32 -14.82 16 5 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.88 -25.90 13.96 55.43 0.77 -25.13 16 8 Si 0.87 20.71 26.36 -169.99 -4.48 16.22 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.26 -5.93 5.99 56.52 0.34 -5.59 16 12 O -0.34 -7.49 9.86 -39.23 -0.39 -7.88 16 13 C 0.46 8.27 7.93 36.01 0.29 8.55 16 14 O -0.52 -10.52 15.20 -18.75 -0.29 -10.80 16 15 C -0.11 -1.24 5.29 -27.88 -0.15 -1.39 16 16 C -0.10 -0.91 3.90 -27.88 -0.11 -1.02 16 17 C 0.04 0.27 5.13 -104.62 -0.54 -0.26 16 18 C -0.11 -0.45 9.67 -39.58 -0.38 -0.84 16 19 C 0.00 -0.02 9.56 -39.58 -0.38 -0.40 16 20 C -0.05 -0.36 6.85 -79.95 -0.55 -0.91 16 21 N 0.03 0.25 4.45 33.96 0.15 0.40 16 22 O -0.14 -1.45 18.45 -29.46 -0.54 -1.99 16 23 O -0.14 -1.32 18.45 -29.46 -0.54 -1.86 16 24 C 0.01 0.07 9.07 -39.58 -0.36 -0.28 16 25 C -0.05 -0.37 6.83 -79.95 -0.55 -0.92 16 26 N 0.03 0.28 4.45 33.96 0.15 0.43 16 27 O -0.15 -1.72 18.46 -29.46 -0.54 -2.26 16 28 O -0.13 -1.61 13.51 -29.46 -0.40 -2.01 16 29 H 0.06 1.40 6.94 -51.93 -0.36 1.04 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.10 1.21 6.57 -51.93 -0.34 0.87 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 0.83 7.98 -51.93 -0.41 0.42 16 36 H 0.12 1.34 5.92 -51.93 -0.31 1.03 16 37 H 0.18 0.25 8.05 -52.49 -0.42 -0.18 16 38 H 0.17 0.36 7.61 -52.49 -0.40 -0.04 16 39 H 0.18 1.19 7.18 -52.49 -0.38 0.82 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -33.10 349.28 -7.46 -40.55 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.76 Total: -2.19 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.86 Total: -8.76 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 1.08 Total: -24.30 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -2.70 Total: -26.80 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.48 Total: 16.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.10 -7.46 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781803231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.421 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds