Wall clock time and date at job start Tue Mar 31 2020 20:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47108 * 2 1 4 4 C 1.50703 * 109.47075 * 240.00149 * 2 1 3 5 5 H 1.08001 * 119.99672 * 265.36091 * 4 2 1 6 6 C 1.37868 * 120.00424 * 85.36602 * 4 2 1 7 7 N 1.31520 * 120.00354 * 185.05583 * 6 4 2 8 8 Si 1.86805 * 119.99863 * 5.05472 * 6 4 2 9 9 H 1.48500 * 109.47140 * 94.69118 * 8 6 4 10 10 H 1.48501 * 109.47162 * 214.68889 * 8 6 4 11 11 H 1.48497 * 109.46922 * 334.68740 * 8 6 4 12 12 O 1.45199 * 109.47140 * 119.99856 * 2 1 3 13 13 C 1.34220 * 117.00203 * 270.00080 * 12 2 1 14 14 O 1.20830 * 119.99957 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00320 * 179.72347 * 13 12 2 16 16 C 1.52995 * 109.47042 * 180.27336 * 15 13 12 17 17 C 1.50705 * 109.47042 * 179.97438 * 16 15 13 18 18 C 1.38258 * 120.00078 * 98.15574 * 17 16 15 19 19 C 1.38212 * 120.00123 * 179.81283 * 18 17 16 20 20 C 1.38259 * 119.99767 * 0.39692 * 19 18 17 21 21 N 1.48019 * 119.99754 * 179.83125 * 20 19 18 22 22 O 1.21797 * 119.99693 * 180.02562 * 21 20 19 23 23 O 1.21794 * 120.00217 * 0.02669 * 21 20 19 24 24 C 1.38217 * 119.99998 * 359.85821 * 20 19 18 25 25 C 1.38217 * 119.99848 * 278.43435 * 17 16 15 26 26 N 1.48018 * 120.00250 * 359.97438 * 25 17 16 27 27 O 1.21792 * 119.99988 * 185.80945 * 26 25 17 28 28 O 1.21801 * 119.99519 * 5.80529 * 26 25 17 29 29 H 1.09004 * 109.47289 * 65.00886 * 1 2 3 30 30 H 1.09003 * 109.47462 * 185.00786 * 1 2 3 31 31 H 1.08999 * 109.47153 * 305.01320 * 1 2 3 32 32 H 0.96994 * 119.99896 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46645 * 300.27619 * 15 13 12 34 34 H 1.08996 * 109.46883 * 60.27679 * 15 13 12 35 35 H 1.08997 * 109.47631 * 299.99679 * 16 15 13 36 36 H 1.08997 * 109.47447 * 60.00710 * 16 15 13 37 37 H 1.08000 * 119.99439 * 0.02562 * 18 17 16 38 38 H 1.07996 * 120.00414 * 180.22995 * 19 18 17 39 39 H 1.07995 * 119.99605 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2836 -1.7597 -1.1834 6 6 2.1711 -0.0209 -2.4163 7 7 2.5137 -0.6608 -3.5130 8 14 1.8726 1.8225 -2.4652 9 1 3.1637 2.5376 -2.3012 10 1 1.2648 2.1911 -3.7690 11 1 0.9520 2.2042 -1.3643 12 8 2.0139 -0.6844 1.1856 13 6 2.2170 0.0640 2.2811 14 8 1.9981 1.2519 2.2503 15 6 2.7128 -0.5781 3.5512 16 6 2.8521 0.4871 4.6404 17 6 3.3472 -0.1551 5.9107 18 6 4.6902 -0.1011 6.2347 19 6 5.1437 -0.6868 7.4016 20 6 4.2556 -1.3337 8.2408 21 7 4.7419 -1.9641 9.4886 22 8 3.9596 -2.5344 10.2277 23 8 5.9242 -1.9126 9.7764 24 6 2.9138 -1.3922 7.9143 25 6 2.4596 -0.8031 6.7490 26 7 1.0227 -0.8658 6.3993 27 8 0.2247 -1.3426 7.1862 28 8 0.6383 -0.4403 5.3247 29 1 -0.3634 0.4342 -0.9315 30 1 -0.3634 -1.0237 0.0897 31 1 -0.3633 0.5896 0.8417 32 1 2.6111 -0.1757 -4.3472 33 1 2.0021 -1.3384 3.8751 34 1 3.6827 -1.0411 3.3696 35 1 3.5628 1.2474 4.3165 36 1 1.8822 0.9501 4.8221 37 1 5.3844 0.4017 5.5776 38 1 6.1922 -0.6414 7.6566 39 1 2.2202 -1.8979 8.5696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781803231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:29 Heat of formation + Delta-G solvation = -79.285187 kcal Electronic energy + Delta-G solvation = -28648.148438 eV Core-core repulsion = 24141.560311 eV Total energy + Delta-G solvation = -4506.588127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.76471 -43.35424 -41.44031 -40.88833 -38.17199 -37.88167 -37.68913 -35.67834 -35.18018 -33.54950 -32.80723 -32.04012 -28.44251 -28.14152 -27.40915 -25.65693 -24.30193 -23.58681 -22.73159 -21.38057 -21.25390 -20.21948 -19.68825 -19.43580 -18.99082 -18.90684 -18.73381 -18.50698 -17.66981 -17.45142 -16.91032 -16.85934 -16.09601 -15.62312 -15.15207 -15.03004 -14.75611 -14.45708 -14.28870 -13.80656 -13.61819 -13.53300 -13.36332 -13.02602 -12.90665 -12.90086 -12.83954 -12.76060 -12.55832 -12.47893 -12.44672 -12.35344 -11.91937 -11.77466 -11.52381 -11.38408 -11.28196 -11.14112 -10.90964 -10.84232 -8.44554 -6.53953 -1.75223 -1.50298 -0.24307 -0.22828 -0.05652 0.21809 1.27302 1.31892 1.33391 1.43311 1.58929 1.96958 2.22443 2.76511 2.79740 2.91323 2.95116 3.13689 3.28701 3.61373 3.80682 3.92410 3.99217 4.08702 4.22590 4.28106 4.38995 4.42012 4.59901 4.65372 4.72184 4.78179 4.79877 4.89996 4.98350 5.15378 5.32396 5.40059 5.69637 6.18211 6.20384 6.23558 6.53207 6.92237 7.13814 8.71036 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.002424 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.028703 B =11549.203636 C =12162.661801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.188 3.812 3 H 0.041 0.959 4 C -0.534 4.534 5 H 0.045 0.955 6 C 0.032 3.968 7 N -0.928 5.928 8 Si 0.928 3.072 9 H -0.265 1.265 10 H -0.270 1.270 11 H -0.245 1.245 12 O -0.362 6.362 13 C 0.455 3.545 14 O -0.544 6.544 15 C -0.096 4.096 16 C -0.092 4.092 17 C 0.040 3.960 18 C -0.086 4.086 19 C 0.017 3.983 20 C -0.056 4.056 21 N 0.029 4.971 22 O -0.186 6.186 23 O -0.131 6.131 24 C 0.010 3.990 25 C -0.053 4.053 26 N 0.029 4.971 27 O -0.164 6.164 28 O -0.160 6.160 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.275 0.725 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.216 0.784 38 H 0.206 0.794 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 2.709 25.123 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.134 3.866 3 H 0.059 0.941 4 C -0.572 4.572 5 H 0.063 0.937 6 C -0.168 4.168 7 N -0.566 5.566 8 Si 0.750 3.250 9 H -0.190 1.190 10 H -0.195 1.195 11 H -0.168 1.168 12 O -0.278 6.278 13 C 0.300 3.700 14 O -0.435 6.435 15 C -0.133 4.133 16 C -0.129 4.129 17 C 0.039 3.961 18 C -0.105 4.105 19 C -0.001 4.001 20 C -0.140 4.140 21 N 0.549 4.451 22 O -0.395 6.395 23 O -0.355 6.355 24 C -0.010 4.010 25 C -0.137 4.137 26 N 0.545 4.455 27 O -0.379 6.379 28 O -0.373 6.373 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.153 0.847 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.233 0.767 38 H 0.223 0.777 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.677 3.364 24.440 25.837 hybrid contribution -0.857 0.199 -0.212 0.905 sum 6.820 3.563 24.228 25.420 Atomic orbital electron populations 1.22234 0.96019 1.01750 1.01031 1.20728 0.92488 0.93115 0.80246 0.94131 1.20918 1.46101 0.97405 0.92735 0.93668 1.25624 0.93479 1.03138 0.94544 1.69975 1.47588 1.38472 1.00530 0.86028 0.80075 0.79785 0.79091 1.19039 1.19461 1.16818 1.86552 1.76138 1.43826 1.21305 1.24104 0.73839 0.85795 0.86309 1.90581 1.49898 1.17980 1.85063 1.21285 1.05266 0.99147 0.87621 1.20936 1.05734 0.97720 0.88532 1.20369 0.93572 0.88594 0.93605 1.21760 0.92995 0.99070 0.96655 1.21973 1.02755 0.85968 0.89418 1.20889 0.94305 1.08721 0.90055 1.43573 1.00796 0.98866 1.01866 1.94632 1.53085 1.43752 1.48003 1.94559 0.99956 1.62919 1.78044 1.20614 0.95203 0.91767 0.93417 1.20686 0.81098 1.11809 1.00088 1.43666 1.03382 0.98285 1.00207 1.94576 1.50901 1.45747 1.46706 1.94622 1.83717 1.48453 1.10470 0.91820 0.92164 0.93324 0.91547 0.87749 0.84651 0.85961 0.88102 0.76701 0.77664 0.80301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.63 9.12 71.98 0.66 -5.98 16 2 C 0.19 9.12 2.09 29.85 0.06 9.19 16 3 H 0.04 2.01 4.72 -2.39 -0.01 2.00 16 4 C -0.53 -30.30 9.25 25.60 0.24 -30.06 16 5 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 6 C 0.03 1.82 5.47 84.65 0.46 2.29 16 7 N -0.93 -55.33 13.96 21.44 0.30 -55.03 16 8 Si 0.93 42.32 26.36 68.60 1.81 44.13 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.24 -10.66 5.99 99.48 0.60 -10.06 16 12 O -0.36 -15.69 9.86 -51.32 -0.51 -16.20 16 13 C 0.45 15.82 7.93 71.24 0.56 16.38 16 14 O -0.54 -21.20 15.20 21.95 0.33 -20.87 16 15 C -0.10 -2.05 5.29 29.85 0.16 -1.89 16 16 C -0.09 -1.47 3.90 29.85 0.12 -1.36 16 17 C 0.04 0.43 5.13 -19.86 -0.10 0.32 16 18 C -0.09 -0.24 9.67 22.27 0.22 -0.03 16 19 C 0.02 0.06 9.56 22.27 0.21 0.28 16 20 C -0.06 -0.59 6.85 36.38 0.25 -0.34 16 21 N 0.03 0.46 4.45 -46.46 -0.21 0.26 16 22 O -0.19 -3.68 18.45 18.89 0.35 -3.33 16 23 O -0.13 -2.07 18.45 18.89 0.35 -1.72 16 24 C 0.01 0.13 9.07 22.27 0.20 0.33 16 25 C -0.05 -0.79 6.83 36.37 0.25 -0.54 16 26 N 0.03 0.64 4.45 -46.47 -0.21 0.43 16 27 O -0.16 -3.98 18.46 18.90 0.35 -3.63 16 28 O -0.16 -4.15 13.51 18.89 0.26 -3.89 16 29 H 0.06 2.73 6.94 -2.38 -0.02 2.71 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.10 2.31 6.57 -2.39 -0.02 2.29 16 34 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.12 1.49 7.98 -2.39 -0.02 1.48 16 36 H 0.10 2.12 5.92 -2.39 -0.01 2.11 16 37 H 0.22 -0.96 8.05 -2.91 -0.02 -0.99 16 38 H 0.21 -0.45 7.61 -2.91 -0.02 -0.47 16 39 H 0.18 2.36 7.18 -2.91 -0.02 2.34 16 Total: -1.00 -75.43 349.28 7.12 -68.31 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.01 Total: 2.96 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 3.28 Total: -11.41 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.11 Total: -54.35 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: 1.13 Total: -49.64 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.81 Total: 44.13 kcal Total: -75.43 7.12 -68.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781803231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.971 kcal (2) G-P(sol) polarization free energy of solvation -75.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds