Wall clock time and date at job start Tue Mar 31 2020 21:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 H 1.08999 * 109.46848 * 305.60343 * 3 2 1 5 5 C 1.50701 * 109.47096 * 185.60990 * 3 2 1 6 6 H 1.08007 * 119.99440 * 266.42580 * 5 3 2 7 7 C 1.37867 * 120.00337 * 86.42117 * 5 3 2 8 8 N 1.31516 * 120.00309 * 185.21884 * 7 5 3 9 9 Si 1.86805 * 120.00053 * 5.21844 * 7 5 3 10 10 H 1.48507 * 109.46950 * 93.74828 * 9 7 5 11 11 H 1.48498 * 109.47150 * 213.74639 * 9 7 5 12 12 H 1.48499 * 109.46885 * 333.75122 * 9 7 5 13 13 O 1.45193 * 109.47458 * 65.60533 * 3 2 1 14 14 C 1.34232 * 117.00288 * 263.20075 * 13 3 2 15 15 O 1.20827 * 119.99550 * 359.91770 * 14 13 3 16 16 C 1.50695 * 120.00156 * 179.97438 * 14 13 3 17 17 S 1.81407 * 115.55102 * 315.64015 * 16 14 13 18 18 O 1.42101 * 110.53995 * 44.46569 * 17 16 14 19 19 O 1.42095 * 110.54103 * 181.21419 * 17 16 14 20 20 C 1.76202 * 104.44931 * 292.84234 * 17 16 14 21 21 C 1.38233 * 119.99739 * 276.54227 * 20 17 16 22 22 C 1.38237 * 119.99550 * 179.78765 * 21 20 17 23 23 C 1.38229 * 120.00135 * 0.44594 * 22 21 20 24 24 C 1.38233 * 120.00011 * 359.80837 * 23 22 21 25 25 C 1.38231 * 119.99955 * 96.81892 * 20 17 16 26 26 C 1.53002 * 117.50002 * 169.97348 * 16 14 13 27 27 C 1.52998 * 117.50242 * 101.31438 * 16 14 13 28 28 H 1.09000 * 109.47201 * 300.00763 * 1 2 3 29 29 H 1.09001 * 109.46696 * 60.00146 * 1 2 3 30 30 H 1.09001 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47201 * 239.99237 * 2 1 3 32 32 H 1.09001 * 109.46326 * 119.99170 * 2 1 3 33 33 H 0.97000 * 120.00389 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.00521 * 0.02562 * 21 20 17 35 35 H 1.08008 * 119.99729 * 180.27867 * 22 21 20 36 36 H 1.08005 * 119.99864 * 179.83105 * 23 22 21 37 37 H 1.07999 * 119.99755 * 180.02562 * 24 23 22 38 38 H 1.08006 * 120.00045 * 359.97438 * 25 20 17 39 39 H 1.09006 * 117.49595 * 0.02562 * 26 16 14 40 40 H 1.09007 * 117.50138 * 145.01581 * 26 16 14 41 41 H 1.08998 * 117.50045 * 214.97672 * 27 16 14 42 42 H 1.09000 * 117.49601 * 359.97438 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9844 -0.8356 5 6 3.5406 1.4448 -0.1389 6 1 4.1644 1.4735 0.7424 7 6 4.1172 1.4102 -1.3907 8 7 5.4229 1.3085 -1.5109 9 14 3.0437 1.5076 -2.9165 10 1 2.9434 2.9208 -3.3616 11 1 3.6467 0.6893 -3.9990 12 1 1.6878 0.9904 -2.6015 13 8 1.6684 2.0873 1.2467 14 6 0.5555 2.8379 1.2365 15 8 -0.0859 2.9534 0.2190 16 6 0.1069 3.5374 2.4936 17 16 0.1720 2.5419 4.0087 18 8 1.3931 1.8184 4.0778 19 8 -0.2983 3.2930 5.1194 20 6 -1.0558 1.3004 3.7723 21 6 -2.3802 1.5750 4.0579 22 6 -3.3441 0.6024 3.8682 23 6 -2.9823 -0.6475 3.4017 24 6 -1.6573 -0.9237 3.1210 25 6 -0.6940 0.0502 3.3066 26 6 -1.0249 4.5593 2.3679 27 6 0.4095 5.0320 2.6168 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.8286 1.2845 -2.3916 34 1 -2.6624 2.5504 4.4256 35 1 -4.3794 0.8183 4.0871 36 1 -3.7351 -1.4082 3.2561 37 1 -1.3748 -1.9001 2.7561 38 1 0.3413 -0.1655 3.0872 39 1 -1.4452 4.7253 1.3760 40 1 -1.7301 4.6337 3.1958 41 1 0.6475 5.4173 3.6083 42 1 0.9336 5.5093 1.7888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:46 Heat of formation + Delta-G solvation = -95.090908 kcal Electronic energy + Delta-G solvation = -28800.621428 eV Core-core repulsion = 24839.641127 eV Total energy + Delta-G solvation = -3960.980300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.17702 -39.21229 -37.65117 -36.88131 -35.96509 -35.65393 -33.49787 -32.04687 -31.46174 -31.15472 -28.04038 -25.57677 -23.49384 -22.94032 -22.87335 -22.73919 -21.23408 -19.99372 -19.01148 -18.45442 -17.66667 -16.87253 -16.50979 -16.24628 -16.08397 -15.60205 -15.22227 -14.75651 -14.65969 -14.50903 -14.05589 -13.72699 -13.52093 -13.17737 -12.86282 -12.85238 -12.41101 -12.19194 -12.12711 -12.03566 -12.00986 -11.87144 -11.66519 -11.46982 -11.39187 -11.26952 -11.06453 -10.89429 -10.84908 -10.56554 -10.25467 -10.06465 -9.83557 -9.56902 -9.51453 -9.14061 -9.08852 -8.72010 -6.27871 -4.31023 -0.08779 0.71249 1.16184 2.25173 2.82783 3.02448 3.17051 3.22666 3.25775 3.30249 3.34719 3.77643 3.96550 4.23487 4.32933 4.43639 4.69667 4.72790 4.81376 4.87384 5.03370 5.15887 5.22554 5.30470 5.46409 5.51636 5.52888 5.74879 5.77509 5.80034 5.88246 5.94659 5.95781 6.06549 6.20209 6.33915 6.51913 6.67694 6.68759 6.71735 7.07837 7.25279 7.45078 8.12776 8.47746 8.85773 9.30308 10.83554 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.004951 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.251965 B = 5654.598673 C = 6428.935542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C 0.187 3.813 4 H 0.052 0.948 5 C -0.522 4.522 6 H 0.090 0.910 7 C 0.084 3.916 8 N -0.881 5.881 9 Si 0.861 3.139 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.256 1.256 13 O -0.326 6.326 14 C 0.505 3.495 15 O -0.501 6.501 16 C -0.652 4.652 17 S 2.536 3.464 18 O -0.897 6.897 19 O -0.931 6.931 20 C -0.658 4.658 21 C -0.022 4.022 22 C -0.145 4.145 23 C -0.065 4.065 24 C -0.137 4.137 25 C -0.011 4.011 26 C -0.099 4.099 27 C -0.098 4.098 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.270 0.730 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.903 1.473 9.740 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.172 4.172 3 C 0.135 3.865 4 H 0.069 0.931 5 C -0.559 4.559 6 H 0.108 0.892 7 C -0.120 4.120 8 N -0.517 5.517 9 Si 0.687 3.313 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.180 1.180 13 O -0.241 6.241 14 C 0.345 3.655 15 O -0.390 6.390 16 C -0.739 4.739 17 S 2.712 3.288 18 O -0.894 6.894 19 O -0.928 6.928 20 C -0.745 4.745 21 C -0.041 4.041 22 C -0.163 4.163 23 C -0.083 4.083 24 C -0.156 4.156 25 C -0.030 4.030 26 C -0.136 4.136 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.339 1.560 9.954 20.054 hybrid contribution -0.974 -0.317 -1.784 2.057 sum -18.313 1.243 8.170 20.091 Atomic orbital electron populations 1.22006 0.97774 1.00253 1.01422 1.22156 0.93362 0.98869 1.02801 1.21177 0.96581 0.88794 0.79991 0.93064 1.20838 0.87715 1.52223 0.95150 0.89210 1.24821 0.94909 0.93920 0.98392 1.69856 1.09435 1.48065 1.24354 0.87083 0.81768 0.79164 0.83288 1.19820 1.20541 1.17961 1.86698 1.37716 1.56926 1.42751 1.20848 0.80435 0.77548 0.86646 1.90581 1.54998 1.60543 1.32866 1.31505 1.18337 1.06552 1.17547 1.04362 0.74929 0.74909 0.74564 1.93646 1.41740 1.69450 1.84606 1.93561 1.81924 1.72838 1.44485 1.30475 1.12726 1.14227 1.17093 1.20873 0.90843 0.99630 0.92746 1.21237 0.99644 0.93862 1.01597 1.21489 0.96393 0.96562 0.93904 1.21331 0.93075 1.00036 1.01176 1.21154 1.01189 0.90844 0.89847 1.23055 0.90694 0.93532 1.06366 1.23071 0.99126 0.85359 1.06051 0.93755 0.92900 0.93589 0.90794 0.91318 0.92017 0.84523 0.85122 0.85316 0.84831 0.83362 0.85506 0.85948 0.85740 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.83 37.16 0.33 -2.57 16 2 C -0.13 -2.88 5.25 -26.73 -0.14 -3.02 16 3 C 0.19 4.61 1.74 -27.88 -0.05 4.56 16 4 H 0.05 1.31 4.44 -51.93 -0.23 1.08 16 5 C -0.52 -14.75 9.24 -34.44 -0.32 -15.06 16 6 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 7 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 8 N -0.88 -26.09 13.96 55.43 0.77 -25.31 16 9 Si 0.86 20.91 26.43 -169.99 -4.49 16.42 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.26 -5.96 6.09 56.52 0.34 -5.61 16 13 O -0.33 -7.47 8.88 -42.76 -0.38 -7.85 16 14 C 0.50 9.95 6.01 36.00 0.22 10.17 16 15 O -0.50 -10.55 14.37 -18.75 -0.27 -10.82 16 16 C -0.65 -9.77 2.51 -91.77 -0.23 -10.00 16 17 S 2.54 38.88 5.11 -107.50 -0.55 38.33 16 18 O -0.90 -17.04 16.17 -61.84 -1.00 -18.04 16 19 O -0.93 -13.97 17.18 -57.54 -0.99 -14.96 16 20 C -0.66 -9.19 5.65 -39.59 -0.22 -9.41 16 21 C -0.02 -0.25 9.47 -39.58 -0.37 -0.62 16 22 C -0.14 -1.40 10.05 -39.59 -0.40 -1.80 16 23 C -0.07 -0.64 10.05 -39.59 -0.40 -1.03 16 24 C -0.14 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.01 -0.16 7.70 -39.59 -0.30 -0.47 16 26 C -0.10 -1.06 9.74 -26.69 -0.26 -1.32 16 27 C -0.10 -1.13 9.96 -26.70 -0.27 -1.40 16 28 H 0.04 0.78 4.69 -51.93 -0.24 0.54 16 29 H 0.05 1.02 8.11 -51.93 -0.42 0.60 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.60 7.11 -51.93 -0.37 1.23 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.14 1.22 7.75 -52.49 -0.41 0.81 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.15 2.25 7.42 -52.48 -0.39 1.87 16 39 H 0.13 1.38 7.71 -51.93 -0.40 0.97 16 40 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -34.99 362.59 -9.81 -44.80 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.46 Total: 3.66 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -2.91 Total: -31.69 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.77 Total: -25.31 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -2.64 Total: -51.67 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.49 Total: 16.42 kcal Atomic # 16 Polarization: 38.88 SS G_CDS: -0.55 Total: 38.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.99 -9.81 -44.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.287 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds