Wall clock time and date at job start Tue Mar 31 2020 21:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 H 1.08999 * 109.46848 * 305.60343 * 3 2 1 5 5 C 1.50701 * 109.47096 * 185.60990 * 3 2 1 6 6 H 1.08007 * 119.99440 * 266.42580 * 5 3 2 7 7 C 1.37867 * 120.00337 * 86.42117 * 5 3 2 8 8 N 1.31516 * 120.00309 * 185.21884 * 7 5 3 9 9 Si 1.86805 * 120.00053 * 5.21844 * 7 5 3 10 10 H 1.48507 * 109.46950 * 93.74828 * 9 7 5 11 11 H 1.48498 * 109.47150 * 213.74639 * 9 7 5 12 12 H 1.48499 * 109.46885 * 333.75122 * 9 7 5 13 13 O 1.45193 * 109.47458 * 65.60533 * 3 2 1 14 14 C 1.34232 * 117.00288 * 263.20075 * 13 3 2 15 15 O 1.20827 * 119.99550 * 359.91770 * 14 13 3 16 16 C 1.50695 * 120.00156 * 179.97438 * 14 13 3 17 17 S 1.81407 * 115.55102 * 315.64015 * 16 14 13 18 18 O 1.42101 * 110.53995 * 44.46569 * 17 16 14 19 19 O 1.42095 * 110.54103 * 181.21419 * 17 16 14 20 20 C 1.76202 * 104.44931 * 292.84234 * 17 16 14 21 21 C 1.38233 * 119.99739 * 276.54227 * 20 17 16 22 22 C 1.38237 * 119.99550 * 179.78765 * 21 20 17 23 23 C 1.38229 * 120.00135 * 0.44594 * 22 21 20 24 24 C 1.38233 * 120.00011 * 359.80837 * 23 22 21 25 25 C 1.38231 * 119.99955 * 96.81892 * 20 17 16 26 26 C 1.53002 * 117.50002 * 169.97348 * 16 14 13 27 27 C 1.52998 * 117.50242 * 101.31438 * 16 14 13 28 28 H 1.09000 * 109.47201 * 300.00763 * 1 2 3 29 29 H 1.09001 * 109.46696 * 60.00146 * 1 2 3 30 30 H 1.09001 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47201 * 239.99237 * 2 1 3 32 32 H 1.09001 * 109.46326 * 119.99170 * 2 1 3 33 33 H 0.97000 * 120.00389 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.00521 * 0.02562 * 21 20 17 35 35 H 1.08008 * 119.99729 * 180.27867 * 22 21 20 36 36 H 1.08005 * 119.99864 * 179.83105 * 23 22 21 37 37 H 1.07999 * 119.99755 * 180.02562 * 24 23 22 38 38 H 1.08006 * 120.00045 * 359.97438 * 25 20 17 39 39 H 1.09006 * 117.49595 * 0.02562 * 26 16 14 40 40 H 1.09007 * 117.50138 * 145.01581 * 26 16 14 41 41 H 1.08998 * 117.50045 * 214.97672 * 27 16 14 42 42 H 1.09000 * 117.49601 * 359.97438 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9844 -0.8356 5 6 3.5406 1.4448 -0.1389 6 1 4.1644 1.4735 0.7424 7 6 4.1172 1.4102 -1.3907 8 7 5.4229 1.3085 -1.5109 9 14 3.0437 1.5076 -2.9165 10 1 2.9434 2.9208 -3.3616 11 1 3.6467 0.6893 -3.9990 12 1 1.6878 0.9904 -2.6015 13 8 1.6684 2.0873 1.2467 14 6 0.5555 2.8379 1.2365 15 8 -0.0859 2.9534 0.2190 16 6 0.1069 3.5374 2.4936 17 16 0.1720 2.5419 4.0087 18 8 1.3931 1.8184 4.0778 19 8 -0.2983 3.2930 5.1194 20 6 -1.0558 1.3004 3.7723 21 6 -2.3802 1.5750 4.0579 22 6 -3.3441 0.6024 3.8682 23 6 -2.9823 -0.6475 3.4017 24 6 -1.6573 -0.9237 3.1210 25 6 -0.6940 0.0502 3.3066 26 6 -1.0249 4.5593 2.3679 27 6 0.4095 5.0320 2.6168 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.8286 1.2845 -2.3916 34 1 -2.6624 2.5504 4.4256 35 1 -4.3794 0.8183 4.0871 36 1 -3.7351 -1.4082 3.2561 37 1 -1.3748 -1.9001 2.7561 38 1 0.3413 -0.1655 3.0872 39 1 -1.4452 4.7253 1.3760 40 1 -1.7301 4.6337 3.1958 41 1 0.6475 5.4173 3.6083 42 1 0.9336 5.5093 1.7888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:46 Heat of formation + Delta-G solvation = -118.268381 kcal Electronic energy + Delta-G solvation = -28801.626478 eV Core-core repulsion = 24839.641127 eV Total energy + Delta-G solvation = -3961.985351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74580 -40.04838 -38.91313 -38.20597 -37.22624 -37.11304 -35.43239 -33.97641 -32.31222 -32.00750 -29.91606 -26.98025 -24.83554 -24.27005 -23.78123 -23.61060 -22.67923 -21.69102 -20.36008 -19.72702 -18.93021 -18.70094 -18.16800 -17.50958 -16.97024 -16.79684 -16.75355 -16.29361 -15.69537 -15.52513 -15.35780 -15.03601 -14.87535 -14.48067 -14.47002 -14.07604 -13.97233 -13.60170 -13.38702 -13.28975 -13.21006 -13.16597 -13.09989 -12.93648 -12.72759 -12.61438 -12.42618 -12.20791 -11.98717 -11.96436 -11.85241 -11.61382 -11.52324 -11.35688 -11.08356 -10.84535 -10.38585 -9.99519 -8.47424 -6.57092 -1.21913 -0.17838 0.32480 0.93140 1.22117 1.26363 1.37660 1.49561 1.76338 2.11896 2.18135 2.40813 2.72605 2.84603 2.88080 3.26295 3.51513 3.64837 3.85699 3.95754 4.11537 4.12904 4.21358 4.22601 4.36354 4.39606 4.41978 4.45394 4.53135 4.67347 4.71189 4.91009 4.95753 4.98617 5.03247 5.04510 5.10158 5.28557 5.30534 5.39462 5.40803 5.55733 5.88942 6.10492 6.50606 6.72479 7.09036 8.68607 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.004951 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.251965 B = 5654.598673 C = 6428.935542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.190 3.810 4 H 0.045 0.955 5 C -0.539 4.539 6 H 0.041 0.959 7 C 0.035 3.965 8 N -0.925 5.925 9 Si 0.925 3.075 10 H -0.269 1.269 11 H -0.265 1.265 12 H -0.240 1.240 13 O -0.347 6.347 14 C 0.503 3.497 15 O -0.516 6.516 16 C -0.676 4.676 17 S 2.541 3.459 18 O -0.952 6.952 19 O -0.931 6.931 20 C -0.671 4.671 21 C -0.030 4.030 22 C -0.139 4.139 23 C -0.059 4.059 24 C -0.145 4.145 25 C -0.044 4.044 26 C -0.071 4.071 27 C -0.098 4.098 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.276 0.724 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.655 1.795 9.636 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.137 3.863 4 H 0.063 0.937 5 C -0.576 4.576 6 H 0.059 0.941 7 C -0.165 4.165 8 N -0.563 5.563 9 Si 0.747 3.253 10 H -0.194 1.194 11 H -0.190 1.190 12 H -0.163 1.163 13 O -0.263 6.263 14 C 0.345 3.655 15 O -0.406 6.406 16 C -0.764 4.764 17 S 2.722 3.278 18 O -0.949 6.949 19 O -0.929 6.929 20 C -0.762 4.762 21 C -0.049 4.049 22 C -0.157 4.157 23 C -0.076 4.076 24 C -0.164 4.164 25 C -0.063 4.063 26 C -0.108 4.108 27 C -0.136 4.136 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.180 0.820 35 H 0.188 0.812 36 H 0.184 0.816 37 H 0.166 0.834 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.180 0.820 41 H 0.170 0.830 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.076 1.901 9.880 24.261 hybrid contribution 0.457 -0.388 -1.632 1.739 sum -21.619 1.513 8.248 23.188 Atomic orbital electron populations 1.21924 0.94923 1.02479 1.01256 1.22063 0.95923 0.96590 1.02534 1.20961 0.94122 0.90646 0.80609 0.93699 1.20975 0.89796 1.52878 0.93944 0.94059 1.25625 0.96173 0.93151 1.01578 1.69981 1.11404 1.49342 1.25594 0.86076 0.80598 0.79523 0.79143 1.19438 1.18953 1.16313 1.86665 1.39941 1.57991 1.41658 1.21495 0.79086 0.76668 0.88236 1.90548 1.55111 1.60913 1.34030 1.31453 1.22601 1.07744 1.14633 1.03828 0.74496 0.74916 0.74565 1.93586 1.44949 1.70796 1.85614 1.93541 1.81762 1.73031 1.44519 1.30164 1.13424 1.13378 1.19202 1.21303 0.89815 1.01468 0.92279 1.21753 1.01105 0.93119 0.99732 1.21970 0.96093 0.97590 0.91993 1.21592 0.93650 1.00054 1.01113 1.21094 1.00721 0.92244 0.92241 1.23442 0.90400 0.88899 1.08076 1.23459 1.00129 0.82326 1.07670 0.93372 0.93537 0.90166 0.91007 0.91686 0.91479 0.82001 0.81224 0.81632 0.83350 0.86179 0.85241 0.82001 0.82980 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 8.83 71.98 0.64 -4.69 16 2 C -0.13 -5.83 5.25 30.60 0.16 -5.67 16 3 C 0.19 9.68 1.74 29.85 0.05 9.73 16 4 H 0.05 2.32 4.44 -2.39 -0.01 2.31 16 5 C -0.54 -32.26 9.24 25.60 0.24 -32.02 16 6 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 7 C 0.04 2.06 5.47 84.65 0.46 2.52 16 8 N -0.93 -57.08 13.96 21.44 0.30 -56.78 16 9 Si 0.92 43.63 26.43 68.60 1.81 45.44 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.24 -10.63 6.09 99.48 0.61 -10.02 16 13 O -0.35 -16.71 8.88 -48.10 -0.43 -17.14 16 14 C 0.50 20.06 6.01 71.23 0.43 20.49 16 15 O -0.52 -21.53 14.37 21.96 0.32 -21.22 16 16 C -0.68 -19.78 2.51 -11.54 -0.03 -19.81 16 17 S 2.54 78.33 5.11 -56.49 -0.29 78.04 16 18 O -0.95 -38.80 16.17 -123.53 -2.00 -40.80 16 19 O -0.93 -26.80 17.18 -127.65 -2.19 -29.00 16 20 C -0.67 -18.17 5.65 22.27 0.13 -18.05 16 21 C -0.03 -0.58 9.47 22.27 0.21 -0.37 16 22 C -0.14 -2.04 10.05 22.27 0.22 -1.81 16 23 C -0.06 -0.90 10.05 22.27 0.22 -0.67 16 24 C -0.15 -3.08 10.05 22.27 0.22 -2.85 16 25 C -0.04 -1.25 7.70 22.27 0.17 -1.08 16 26 C -0.07 -1.31 9.74 30.62 0.30 -1.01 16 27 C -0.10 -2.09 9.96 30.62 0.30 -1.79 16 28 H 0.05 1.68 4.69 -2.39 -0.01 1.67 16 29 H 0.05 1.71 8.11 -2.39 -0.02 1.69 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 3.12 7.11 -2.39 -0.02 3.10 16 32 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.16 2.18 7.75 -2.91 -0.02 2.16 16 35 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.12 3.99 7.42 -2.91 -0.02 3.97 16 39 H 0.13 2.39 7.71 -2.38 -0.02 2.37 16 40 H 0.16 1.68 8.14 -2.38 -0.02 1.67 16 41 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -82.07 362.59 2.19 -79.89 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.94 Total: 18.64 kcal Atomic # 6 Polarization: -60.81 SS G_CDS: 3.73 Total: -57.08 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.30 Total: -56.78 kcal Atomic # 8 Polarization: -103.85 SS G_CDS: -4.30 Total: -108.15 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.81 Total: 45.44 kcal Atomic # 16 Polarization: 78.33 SS G_CDS: -0.29 Total: 78.04 kcal Total: -82.07 2.19 -79.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.383 kcal (2) G-P(sol) polarization free energy of solvation -82.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds