Wall clock time and date at job start Tue Mar 31 2020 21:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 H 1.09001 * 109.46961 * 55.00046 * 3 2 1 5 5 C 1.50697 * 109.47302 * 175.00334 * 3 2 1 6 6 H 1.08001 * 120.00146 * 115.01979 * 5 3 2 7 7 C 1.37886 * 119.99630 * 295.02461 * 5 3 2 8 8 N 1.31507 * 120.00128 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99643 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47077 * 90.00063 * 9 7 5 11 11 H 1.48506 * 109.46695 * 209.99892 * 9 7 5 12 12 H 1.48497 * 109.47007 * 329.99577 * 9 7 5 13 13 O 1.45207 * 109.47114 * 295.00325 * 3 2 1 14 14 C 1.34216 * 117.00164 * 100.35077 * 13 3 2 15 15 O 1.20831 * 120.00088 * 356.75073 * 14 13 3 16 16 C 1.50707 * 120.00391 * 176.74419 * 14 13 3 17 17 S 1.81392 * 115.55453 * 212.10084 * 16 14 13 18 18 O 1.42105 * 110.54323 * 149.50782 * 17 16 14 19 19 O 1.42104 * 110.54101 * 286.25693 * 17 16 14 20 20 C 1.76203 * 104.45009 * 37.88492 * 17 16 14 21 21 C 1.38234 * 119.99562 * 263.30018 * 20 17 16 22 22 C 1.38242 * 119.99887 * 179.78544 * 21 20 17 23 23 C 1.38237 * 119.99660 * 0.44481 * 22 21 20 24 24 C 1.38238 * 119.99932 * 359.80706 * 23 22 21 25 25 C 1.38228 * 120.00087 * 83.57516 * 20 17 16 26 26 C 1.53001 * 117.49167 * 66.42613 * 16 14 13 27 27 C 1.53000 * 60.03383 * 252.48184 * 26 16 14 28 28 H 1.09004 * 109.47109 * 300.00362 * 1 2 3 29 29 H 1.09003 * 109.47106 * 59.99714 * 1 2 3 30 30 H 1.09000 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46742 * 240.00320 * 2 1 3 32 32 H 1.08996 * 109.47353 * 119.99948 * 2 1 3 33 33 H 0.96996 * 120.00095 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.00344 * 359.97438 * 21 20 17 35 35 H 1.07994 * 120.00173 * 180.27611 * 22 21 20 36 36 H 1.07997 * 120.00175 * 179.82995 * 23 22 21 37 37 H 1.08001 * 119.99799 * 179.97438 * 24 23 22 38 38 H 1.07996 * 119.99927 * 359.97438 * 25 20 17 39 39 H 1.08997 * 117.50397 * 359.97438 * 26 16 14 40 40 H 1.09001 * 117.49282 * 144.97786 * 26 16 14 41 41 H 1.08995 * 117.49657 * 107.50630 * 27 26 16 42 42 H 1.09000 * 117.49628 * 252.52507 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1502 1.8158 -0.6877 7 6 4.1395 0.9716 1.2730 8 7 3.3988 0.5197 2.2612 9 14 6.0012 0.9732 1.4261 10 1 6.4480 2.2590 2.0196 11 1 6.4269 -0.1496 2.2998 12 1 6.6086 0.8114 0.0807 13 8 1.6558 2.0917 -1.2407 14 6 0.5855 2.9005 -1.1993 15 8 -0.0458 3.0151 -0.1754 16 6 0.1710 3.6657 -2.4297 17 16 -0.5908 5.2835 -2.1253 18 8 -0.3108 6.1758 -3.1952 19 8 -1.9132 5.1265 -1.6293 20 6 0.3092 5.9438 -0.7619 21 6 -0.1869 5.8137 0.5218 22 6 0.5214 6.3278 1.5919 23 6 1.7211 6.9801 1.3772 24 6 2.2145 7.1148 0.0930 25 6 1.5084 6.5969 -0.9766 26 6 -0.3388 2.8584 -3.6252 27 6 1.0405 3.5181 -3.6808 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.8192 0.1869 3.0695 34 1 -1.1263 5.3077 0.6890 35 1 0.1360 6.2223 2.5952 36 1 2.2731 7.3842 2.2129 37 1 3.1516 7.6248 -0.0747 38 1 1.8939 6.7020 -1.9800 39 1 -0.3740 1.7739 -3.5220 40 1 -1.1323 3.2993 -4.2285 41 1 1.9126 2.8677 -3.6142 42 1 1.1543 4.3933 -4.3206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:50 Heat of formation + Delta-G solvation = -101.158842 kcal Electronic energy + Delta-G solvation = -28538.111807 eV Core-core repulsion = 24576.868381 eV Total energy + Delta-G solvation = -3961.243426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99573 -38.92877 -37.37707 -36.86425 -36.01288 -35.85524 -33.52954 -31.52771 -31.20988 -30.89234 -27.47066 -25.34457 -23.35094 -23.05265 -22.77536 -22.59420 -21.36004 -19.80416 -18.83741 -18.14886 -17.28917 -16.83998 -16.61388 -15.88334 -15.82928 -15.47874 -15.09065 -14.68800 -14.56577 -14.42926 -14.10162 -13.41821 -13.29072 -12.98361 -12.89633 -12.51566 -12.25260 -12.17592 -12.03876 -11.98674 -11.78089 -11.57987 -11.42244 -11.35981 -11.16896 -11.12318 -10.95357 -10.81985 -10.73534 -10.46256 -10.35878 -9.99383 -9.83707 -9.58779 -9.26750 -8.92708 -8.86372 -8.56340 -6.27907 -4.34711 0.00011 0.96900 1.45879 2.35227 2.78639 3.17311 3.18738 3.24420 3.29214 3.38653 3.58083 3.90921 4.10891 4.23576 4.34960 4.57940 4.92140 4.96542 4.99526 5.05475 5.09304 5.26952 5.41566 5.48885 5.56914 5.69436 5.79827 5.88662 6.03829 6.10042 6.15354 6.19734 6.31107 6.33701 6.47601 6.74129 6.82349 6.95222 7.02040 7.06736 7.49822 7.60057 7.76568 8.01768 8.42122 8.76492 9.30797 10.79964 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.005123 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.978595 B = 5463.923687 C = 6545.691220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.057 0.943 5 C -0.526 4.526 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.908 3.092 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.344 6.344 14 C 0.515 3.485 15 O -0.499 6.499 16 C -0.653 4.653 17 S 2.551 3.449 18 O -0.931 6.931 19 O -0.921 6.921 20 C -0.658 4.658 21 C 0.008 3.992 22 C -0.141 4.141 23 C -0.060 4.060 24 C -0.145 4.145 25 C -0.021 4.021 26 C -0.102 4.102 27 C -0.103 4.103 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.267 0.733 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 8.749 -7.808 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.075 0.925 5 C -0.563 4.563 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.735 3.265 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.259 6.259 14 C 0.356 3.644 15 O -0.389 6.389 16 C -0.741 4.741 17 S 2.728 3.272 18 O -0.929 6.929 19 O -0.918 6.918 20 C -0.747 4.747 21 C -0.011 4.011 22 C -0.160 4.160 23 C -0.078 4.078 24 C -0.164 4.164 25 C -0.040 4.040 26 C -0.140 4.140 27 C -0.141 4.141 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.151 0.849 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.265 9.000 -7.727 12.978 hybrid contribution 1.654 -0.508 1.032 2.014 sum -3.611 8.492 -6.694 11.400 Atomic orbital electron populations 1.21829 0.98342 0.99511 1.00717 1.21923 0.92684 0.99062 1.02931 1.20823 0.95150 0.88735 0.78619 0.92513 1.21045 0.89592 1.43399 1.02311 0.91388 1.24878 0.99124 0.94737 0.95001 1.69916 1.35473 1.40977 1.05946 0.86336 0.84031 0.77861 0.78313 1.20408 1.20877 1.19557 1.86392 1.41716 1.54400 1.43440 1.20584 0.80050 0.78092 0.85696 1.90669 1.53136 1.63262 1.31810 1.32007 1.22064 1.22241 0.97755 1.03729 0.74684 0.74320 0.74418 1.93562 1.85826 1.58672 1.54795 1.93550 1.32783 1.85797 1.79699 1.30161 1.11605 1.17395 1.15495 1.20971 0.98486 0.91173 0.90441 1.21287 0.95862 0.99527 0.99321 1.21481 0.94734 0.94430 0.97190 1.21202 1.00421 1.01959 0.92773 1.20851 0.91308 0.91934 0.99905 1.22979 0.98736 1.01224 0.91072 1.23172 0.96067 1.04206 0.90606 0.92795 0.94896 0.94337 0.93711 0.88069 0.92314 0.83786 0.85076 0.85388 0.85163 0.84588 0.85785 0.86476 0.84873 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.94 37.16 0.33 -2.70 16 2 C -0.13 -3.00 5.52 -26.73 -0.15 -3.15 16 3 C 0.22 5.51 2.11 -27.88 -0.06 5.45 16 4 H 0.06 1.60 6.89 -51.93 -0.36 1.24 16 5 C -0.53 -14.07 8.84 -34.44 -0.30 -14.37 16 6 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.31 11.68 55.43 0.65 -23.66 16 9 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 O -0.34 -7.58 8.80 -39.22 -0.35 -7.93 16 14 C 0.52 10.25 5.74 36.01 0.21 10.45 16 15 O -0.50 -10.96 13.13 -18.75 -0.25 -11.21 16 16 C -0.65 -10.00 2.70 -91.73 -0.25 -10.24 16 17 S 2.55 40.00 5.10 -107.50 -0.55 39.45 16 18 O -0.93 -14.46 16.62 -57.54 -0.96 -15.41 16 19 O -0.92 -16.53 16.96 -57.54 -0.98 -17.50 16 20 C -0.66 -10.74 4.76 -39.59 -0.19 -10.93 16 21 C 0.01 0.14 8.03 -39.58 -0.32 -0.18 16 22 C -0.14 -2.09 10.05 -39.58 -0.40 -2.49 16 23 C -0.06 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 25 C -0.02 -0.31 9.47 -39.59 -0.37 -0.68 16 26 C -0.10 -1.17 10.00 -26.73 -0.27 -1.44 16 27 C -0.10 -1.21 9.70 -26.69 -0.26 -1.47 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.03 0.64 6.80 -51.93 -0.35 0.29 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 2.59 6.38 -51.93 -0.33 2.26 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 34 H 0.14 2.40 7.39 -52.48 -0.39 2.01 16 35 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.14 1.66 7.74 -52.49 -0.41 1.25 16 39 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.13 1.62 7.62 -51.93 -0.40 1.22 16 42 H 0.13 1.17 7.67 -51.93 -0.40 0.77 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -32.68 365.90 -10.40 -43.08 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.56 Total: 5.92 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -2.91 Total: -33.66 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.65 Total: -23.66 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -2.52 Total: -52.05 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 40.00 SS G_CDS: -0.55 Total: 39.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.68 -10.40 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.077 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds