Wall clock time and date at job start Tue Mar 31 2020 21:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 H 1.09001 * 109.46961 * 55.00046 * 3 2 1 5 5 C 1.50697 * 109.47302 * 175.00334 * 3 2 1 6 6 H 1.08001 * 120.00146 * 115.01979 * 5 3 2 7 7 C 1.37886 * 119.99630 * 295.02461 * 5 3 2 8 8 N 1.31507 * 120.00128 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99643 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47077 * 90.00063 * 9 7 5 11 11 H 1.48506 * 109.46695 * 209.99892 * 9 7 5 12 12 H 1.48497 * 109.47007 * 329.99577 * 9 7 5 13 13 O 1.45207 * 109.47114 * 295.00325 * 3 2 1 14 14 C 1.34216 * 117.00164 * 100.35077 * 13 3 2 15 15 O 1.20831 * 120.00088 * 356.75073 * 14 13 3 16 16 C 1.50707 * 120.00391 * 176.74419 * 14 13 3 17 17 S 1.81392 * 115.55453 * 212.10084 * 16 14 13 18 18 O 1.42105 * 110.54323 * 149.50782 * 17 16 14 19 19 O 1.42104 * 110.54101 * 286.25693 * 17 16 14 20 20 C 1.76203 * 104.45009 * 37.88492 * 17 16 14 21 21 C 1.38234 * 119.99562 * 263.30018 * 20 17 16 22 22 C 1.38242 * 119.99887 * 179.78544 * 21 20 17 23 23 C 1.38237 * 119.99660 * 0.44481 * 22 21 20 24 24 C 1.38238 * 119.99932 * 359.80706 * 23 22 21 25 25 C 1.38228 * 120.00087 * 83.57516 * 20 17 16 26 26 C 1.53001 * 117.49167 * 66.42613 * 16 14 13 27 27 C 1.53000 * 60.03383 * 252.48184 * 26 16 14 28 28 H 1.09004 * 109.47109 * 300.00362 * 1 2 3 29 29 H 1.09003 * 109.47106 * 59.99714 * 1 2 3 30 30 H 1.09000 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46742 * 240.00320 * 2 1 3 32 32 H 1.08996 * 109.47353 * 119.99948 * 2 1 3 33 33 H 0.96996 * 120.00095 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.00344 * 359.97438 * 21 20 17 35 35 H 1.07994 * 120.00173 * 180.27611 * 22 21 20 36 36 H 1.07997 * 120.00175 * 179.82995 * 23 22 21 37 37 H 1.08001 * 119.99799 * 179.97438 * 24 23 22 38 38 H 1.07996 * 119.99927 * 359.97438 * 25 20 17 39 39 H 1.08997 * 117.50397 * 359.97438 * 26 16 14 40 40 H 1.09001 * 117.49282 * 144.97786 * 26 16 14 41 41 H 1.08995 * 117.49657 * 107.50630 * 27 26 16 42 42 H 1.09000 * 117.49628 * 252.52507 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1502 1.8158 -0.6877 7 6 4.1395 0.9716 1.2730 8 7 3.3988 0.5197 2.2612 9 14 6.0012 0.9732 1.4261 10 1 6.4480 2.2590 2.0196 11 1 6.4269 -0.1496 2.2998 12 1 6.6086 0.8114 0.0807 13 8 1.6558 2.0917 -1.2407 14 6 0.5855 2.9005 -1.1993 15 8 -0.0458 3.0151 -0.1754 16 6 0.1710 3.6657 -2.4297 17 16 -0.5908 5.2835 -2.1253 18 8 -0.3108 6.1758 -3.1952 19 8 -1.9132 5.1265 -1.6293 20 6 0.3092 5.9438 -0.7619 21 6 -0.1869 5.8137 0.5218 22 6 0.5214 6.3278 1.5919 23 6 1.7211 6.9801 1.3772 24 6 2.2145 7.1148 0.0930 25 6 1.5084 6.5969 -0.9766 26 6 -0.3388 2.8584 -3.6252 27 6 1.0405 3.5181 -3.6808 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.8192 0.1869 3.0695 34 1 -1.1263 5.3077 0.6890 35 1 0.1360 6.2223 2.5952 36 1 2.2731 7.3842 2.2129 37 1 3.1516 7.6248 -0.0747 38 1 1.8939 6.7020 -1.9800 39 1 -0.3740 1.7739 -3.5220 40 1 -1.1323 3.2993 -4.2285 41 1 1.9126 2.8677 -3.6142 42 1 1.1543 4.3933 -4.3206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:50 Heat of formation + Delta-G solvation = -120.675997 kcal Electronic energy + Delta-G solvation = -28538.958135 eV Core-core repulsion = 24576.868381 eV Total energy + Delta-G solvation = -3962.089753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58593 -40.03335 -38.58750 -38.20028 -37.51717 -37.24024 -35.43932 -33.42763 -32.32367 -32.00587 -29.38997 -26.73474 -25.15430 -24.19428 -23.79460 -23.65394 -22.90035 -21.58339 -20.11674 -19.49416 -18.75469 -18.43850 -18.18651 -17.27831 -17.02089 -16.84235 -16.68907 -16.39035 -15.75109 -15.54357 -15.32689 -14.93248 -14.81382 -14.50971 -14.23793 -13.97145 -13.47087 -13.44279 -13.37464 -13.34580 -13.27506 -13.20351 -13.07415 -12.80147 -12.66895 -12.54350 -12.28676 -12.24627 -12.17246 -11.96133 -11.83089 -11.58311 -11.56060 -11.36045 -10.85275 -10.56551 -10.39123 -10.01277 -8.29577 -6.44976 -1.19984 -0.17649 0.32115 1.02318 1.38534 1.40859 1.45756 1.53705 1.86424 2.17606 2.34539 2.42320 2.74851 2.98883 3.02060 3.21856 3.54283 3.70487 3.84834 3.93291 4.06542 4.27579 4.33613 4.35877 4.35908 4.44091 4.46185 4.52773 4.70446 4.78913 4.82148 4.94162 4.98307 5.05162 5.06220 5.16655 5.24627 5.30904 5.36247 5.49669 5.63663 5.86557 5.88271 6.05895 6.57068 6.86091 7.25898 8.78316 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.005123 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.978595 B = 5463.923687 C = 6545.691220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.224 3.776 4 H 0.016 0.984 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.261 1.261 13 O -0.346 6.346 14 C 0.511 3.489 15 O -0.526 6.526 16 C -0.675 4.675 17 S 2.567 3.433 18 O -0.928 6.928 19 O -0.952 6.952 20 C -0.679 4.679 21 C -0.022 4.022 22 C -0.157 4.157 23 C -0.065 4.065 24 C -0.148 4.148 25 C -0.035 4.035 26 C -0.089 4.089 27 C -0.087 4.087 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.269 0.731 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 9.258 -9.651 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.171 3.829 4 H 0.034 0.966 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.185 1.185 13 O -0.262 6.262 14 C 0.354 3.646 15 O -0.417 6.417 16 C -0.763 4.763 17 S 2.747 3.253 18 O -0.926 6.926 19 O -0.949 6.949 20 C -0.768 4.768 21 C -0.041 4.041 22 C -0.176 4.176 23 C -0.082 4.082 24 C -0.166 4.166 25 C -0.054 4.054 26 C -0.127 4.127 27 C -0.125 4.125 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.148 0.852 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.767 9.527 -9.586 14.030 hybrid contribution 1.162 -0.638 1.601 2.079 sum -2.605 8.889 -7.984 12.229 Atomic orbital electron populations 1.21706 0.96357 1.01131 1.00104 1.21771 0.94428 0.97812 1.02017 1.20477 0.94514 0.89273 0.78620 0.96583 1.21341 0.90522 1.43951 1.02743 0.91477 1.25734 1.03757 0.94020 0.94450 1.70042 1.37399 1.41378 1.06400 0.85331 0.78339 0.78025 0.78682 1.19884 1.20299 1.18540 1.86366 1.42970 1.55185 1.41667 1.21303 0.78873 0.77462 0.87003 1.90663 1.53674 1.63834 1.33505 1.31858 1.25484 1.21878 0.97094 1.03143 0.73955 0.74228 0.74014 1.93550 1.85768 1.58652 1.54592 1.93508 1.34851 1.86337 1.80224 1.30299 1.12692 1.18361 1.15430 1.21029 0.98760 0.92648 0.91671 1.21607 0.96645 0.99730 0.99642 1.21927 0.94175 0.93568 0.98575 1.21704 1.01374 1.01204 0.92366 1.21285 0.90856 0.91632 1.01628 1.23435 0.99734 1.01557 0.88001 1.23468 0.96010 1.05159 0.87819 0.94752 0.94123 0.91505 0.92880 0.90516 0.92139 0.85366 0.83692 0.82235 0.81781 0.82264 0.85306 0.82939 0.85225 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 8.94 71.98 0.64 -5.00 16 2 C -0.12 -5.83 5.52 30.59 0.17 -5.66 16 3 C 0.22 11.60 2.11 29.85 0.06 11.67 16 4 H 0.02 0.97 6.89 -2.39 -0.02 0.95 16 5 C -0.55 -29.69 8.84 25.60 0.23 -29.47 16 6 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 7 C 0.02 1.10 5.30 84.66 0.45 1.55 16 8 N -0.91 -51.19 11.68 21.45 0.25 -50.94 16 9 Si 0.97 41.49 29.54 68.60 2.03 43.51 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 13 O -0.35 -15.41 8.80 -51.28 -0.45 -15.86 16 14 C 0.51 20.58 5.74 71.24 0.41 20.99 16 15 O -0.53 -24.14 13.13 21.95 0.29 -23.85 16 16 C -0.67 -19.91 2.70 -11.51 -0.03 -19.95 16 17 S 2.57 79.47 5.10 -56.49 -0.29 79.18 16 18 O -0.93 -27.21 16.62 -127.65 -2.12 -29.33 16 19 O -0.95 -34.94 16.96 -127.65 -2.17 -37.11 16 20 C -0.68 -22.45 4.76 22.27 0.11 -22.34 16 21 C -0.02 -0.77 8.03 22.27 0.18 -0.59 16 22 C -0.16 -4.79 10.05 22.27 0.22 -4.57 16 23 C -0.06 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.15 -3.73 10.05 22.27 0.22 -3.51 16 25 C -0.04 -1.00 9.47 22.27 0.21 -0.78 16 26 C -0.09 -1.81 10.00 30.59 0.31 -1.50 16 27 C -0.09 -1.80 9.70 30.62 0.30 -1.51 16 28 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.59 6.80 -2.39 -0.02 1.57 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 4.04 6.38 -2.39 -0.02 4.02 16 33 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.13 4.70 7.39 -2.91 -0.02 4.68 16 35 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.16 3.56 7.74 -2.91 -0.02 3.54 16 39 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.13 2.84 7.62 -2.39 -0.02 2.82 16 42 H 0.16 2.28 7.67 -2.39 -0.02 2.26 16 Total: -1.00 -73.17 365.90 2.27 -70.91 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 1.03 Total: 25.62 kcal Atomic # 6 Polarization: -65.83 SS G_CDS: 3.70 Total: -62.13 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.25 Total: -50.94 kcal Atomic # 8 Polarization: -101.71 SS G_CDS: -4.45 Total: -106.16 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: 79.47 SS G_CDS: -0.29 Total: 79.18 kcal Total: -73.17 2.27 -70.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.770 kcal (2) G-P(sol) polarization free energy of solvation -73.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds