Wall clock time and date at job start Tue Mar 31 2020 20:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99661 * 2 1 4 4 H 1.48502 * 109.47148 * 270.00123 * 3 2 1 5 5 H 1.48494 * 109.47262 * 30.00485 * 3 2 1 6 6 H 1.48500 * 109.46681 * 150.00410 * 3 2 1 7 7 C 1.37866 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99926 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00136 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99943 * 179.97438 * 10 9 7 12 12 O 1.21583 * 120.00180 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00234 * 179.97438 * 11 10 9 14 14 N 1.40102 * 119.99641 * 0.02562 * 13 11 10 15 15 C 1.34773 * 119.99905 * 180.02562 * 14 13 11 16 16 O 1.21276 * 120.00228 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99995 * 180.02562 * 15 14 13 18 18 O 1.42904 * 109.47159 * 179.97438 * 17 15 14 19 19 C 1.35898 * 116.99940 * 179.97438 * 18 17 15 20 20 C 1.38747 * 120.05546 * 0.02562 * 19 18 17 21 21 C 1.38125 * 119.94590 * 179.97438 * 20 19 18 22 22 C 1.38289 * 120.05159 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.11362 * 359.97438 * 22 21 20 24 24 C 1.38163 * 120.05442 * 0.02562 * 23 22 21 25 25 N 1.48007 * 120.02705 * 180.02562 * 24 23 22 26 26 O 1.21798 * 120.00276 * 359.97438 * 25 24 23 27 27 O 1.21799 * 120.00116 * 179.97438 * 25 24 23 28 28 H 0.97002 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47075 * 60.00426 * 9 7 2 30 30 H 1.08996 * 109.47410 * 299.99988 * 9 7 2 31 31 H 0.96997 * 119.99915 * 0.02562 * 10 9 7 32 32 H 0.96993 * 120.00477 * 179.97438 * 13 11 10 33 33 H 0.97006 * 120.00215 * 359.97438 * 14 13 11 34 34 H 1.08999 * 109.47357 * 59.99584 * 17 15 14 35 35 H 1.08995 * 109.46759 * 299.99718 * 17 15 14 36 36 H 1.08000 * 120.03041 * 359.95195 * 20 19 18 37 37 H 1.07993 * 119.97844 * 179.72247 * 21 20 19 38 38 H 1.08004 * 119.94567 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.97538 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5751 -0.0010 11 6 5.3249 -2.8214 -0.0020 12 8 6.1150 -1.8973 -0.0025 13 7 5.7743 -4.0921 -0.0013 14 7 4.8639 -5.1570 -0.0002 15 6 5.3131 -6.4276 0.0009 16 8 6.5055 -6.6492 0.0005 17 6 4.3338 -7.5731 0.0016 18 8 5.0483 -8.8107 0.0022 19 6 4.3082 -9.9504 0.0033 20 6 2.9226 -9.8792 0.0034 21 6 2.1725 -11.0390 0.0040 22 6 2.8016 -12.2705 0.0041 23 6 4.1820 -12.3442 0.0030 24 6 4.9367 -11.1869 0.0024 25 7 6.4147 -11.2665 0.0006 26 8 6.9661 -12.3525 0.0003 27 8 7.0795 -10.2460 -0.0004 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6799 -0.8911 31 1 3.3696 -3.3124 -0.0010 32 1 6.7279 -4.2693 -0.0024 33 1 3.9101 -4.9798 0.0005 34 1 3.7074 -7.5161 -0.8886 35 1 3.7070 -7.5146 0.8913 36 1 2.4308 -8.9176 0.0032 37 1 1.0940 -10.9841 0.0085 38 1 2.2134 -13.1764 0.0050 39 1 4.6710 -13.3072 0.0035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:27 Heat of formation + Delta-G solvation = -24.424795 kcal Electronic energy + Delta-G solvation = -27834.888875 eV Core-core repulsion = 23362.972424 eV Total energy + Delta-G solvation = -4471.916451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36872 -41.05875 -40.27879 -39.16014 -38.13686 -36.53068 -35.66871 -34.54825 -32.69152 -32.45715 -31.75608 -30.99032 -28.60035 -27.78671 -26.71498 -23.58574 -22.87312 -22.74259 -21.49214 -20.62889 -19.97878 -19.32121 -18.78494 -18.44203 -17.77791 -17.71851 -17.01392 -17.01348 -16.51267 -16.01998 -15.87676 -15.50527 -15.15087 -15.00690 -14.70589 -14.61495 -14.35530 -13.57160 -13.50168 -13.32284 -12.84331 -12.64203 -12.47733 -12.33762 -11.97631 -11.61540 -11.36115 -11.19842 -11.15334 -11.14777 -10.86388 -10.50045 -10.24421 -10.10790 -9.96140 -9.63125 -9.31023 -8.93517 -8.63222 -8.18181 -6.33793 -4.37232 -0.47002 0.35960 1.04612 1.16349 1.36742 2.07399 2.42553 2.69268 3.19437 3.26295 3.34900 3.41513 3.44440 3.71090 3.73618 4.00366 4.14858 4.23608 4.27199 4.29353 4.34397 4.38958 4.78145 5.02253 5.02690 5.03531 5.24087 5.44947 5.61454 6.04576 6.24699 6.33440 6.42572 6.85458 6.94424 7.01582 7.22128 7.24298 7.54311 7.68159 8.13107 8.41851 8.62187 8.80649 9.25732 10.77696 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.002117 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.772577 B =13221.018681 C =14729.345355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.235 3.765 10 N -0.718 5.718 11 C 0.704 3.296 12 O -0.577 6.577 13 N -0.536 5.536 14 N -0.520 5.520 15 C 0.513 3.487 16 O -0.499 6.499 17 C 0.042 3.958 18 O -0.254 6.254 19 C 0.197 3.803 20 C -0.215 4.215 21 C -0.025 4.025 22 C -0.157 4.157 23 C -0.020 4.020 24 C -0.079 4.079 25 N 0.030 4.970 26 O -0.186 6.186 27 O -0.118 6.118 28 H 0.269 0.731 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.386 0.614 32 H 0.439 0.561 33 H 0.424 0.576 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 -25.941 0.040 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.097 0.903 9 C 0.112 3.888 10 N -0.372 5.372 11 C 0.403 3.597 12 O -0.451 6.451 13 N -0.296 5.296 14 N -0.273 5.273 15 C 0.297 3.703 16 O -0.371 6.371 17 C -0.038 4.038 18 O -0.163 6.163 19 C 0.148 3.852 20 C -0.234 4.234 21 C -0.043 4.043 22 C -0.176 4.176 23 C -0.039 4.039 24 C -0.163 4.163 25 N 0.549 4.451 26 O -0.393 6.393 27 O -0.342 6.342 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.220 0.780 32 H 0.284 0.716 33 H 0.266 0.734 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.173 0.827 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.451 -25.148 0.044 25.152 hybrid contribution -0.090 0.564 -0.025 0.572 sum 0.361 -24.584 0.019 24.587 Atomic orbital electron populations 1.69862 1.06217 1.27629 1.49004 1.24763 0.94807 0.99233 0.93672 0.86816 0.80615 0.83108 0.79183 1.19746 1.20832 1.18380 1.21002 0.88265 0.95204 1.53979 0.90320 1.19489 0.95147 0.76934 0.97181 1.45463 1.03249 1.11448 1.77080 1.15941 0.84274 0.80767 0.78681 1.90995 1.55329 1.39468 1.59283 1.44757 1.05653 0.96288 1.82887 1.44488 1.06439 0.99641 1.76747 1.19797 0.89995 0.81894 0.78660 1.90866 1.15645 1.83384 1.47160 1.22507 0.94036 0.81859 1.05403 1.86462 1.32792 1.11081 1.86011 1.18690 0.90510 0.85118 0.90916 1.21446 0.90728 1.01687 1.09530 1.21469 1.01347 0.91375 0.90089 1.21171 0.92911 0.99163 1.04319 1.21003 0.94110 0.97133 0.91646 1.20575 0.80623 0.93751 1.21389 1.43377 1.02875 1.00762 0.98125 1.94515 1.73101 1.16459 1.55192 1.94713 1.63739 1.24570 1.51226 0.92118 0.95412 0.95864 0.77977 0.71575 0.73424 0.87354 0.87352 0.82698 0.83412 0.83340 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 13.96 55.43 0.77 -24.17 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 20.38 27.47 -169.99 -4.67 15.71 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.55 -13.82 9.83 -34.44 -0.34 -14.16 16 8 H 0.08 2.02 7.84 -52.48 -0.41 1.61 16 9 C 0.23 5.35 4.50 -5.19 -0.02 5.33 16 10 N -0.72 -13.07 5.51 -66.42 -0.37 -13.44 16 11 C 0.70 12.84 8.68 -86.92 -0.75 12.09 16 12 O -0.58 -12.89 17.18 5.29 0.09 -12.80 16 13 N -0.54 -7.69 6.26 27.63 0.17 -7.51 16 14 N -0.52 -5.43 6.26 31.22 0.20 -5.24 16 15 C 0.51 5.54 8.02 -10.98 -0.09 5.45 16 16 O -0.50 -7.78 16.34 -14.35 -0.23 -8.01 16 17 C 0.04 0.27 5.22 36.01 0.19 0.46 16 18 O -0.25 -2.61 7.68 -49.77 -0.38 -2.99 16 19 C 0.20 1.64 6.67 -39.22 -0.26 1.38 16 20 C -0.21 -0.96 9.04 -39.43 -0.36 -1.32 16 21 C -0.02 -0.07 10.04 -39.60 -0.40 -0.47 16 22 C -0.16 -0.54 10.04 -39.56 -0.40 -0.94 16 23 C -0.02 -0.12 9.55 -39.61 -0.38 -0.50 16 24 C -0.08 -0.75 6.87 -79.81 -0.55 -1.30 16 25 N 0.03 0.39 4.45 34.03 0.15 0.54 16 26 O -0.19 -2.47 18.45 -29.46 -0.54 -3.01 16 27 O -0.12 -1.86 17.24 -36.49 -0.63 -2.49 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 31 H 0.39 5.70 6.24 -40.82 -0.25 5.44 16 32 H 0.44 6.36 8.10 -182.60 -1.48 4.88 16 33 H 0.42 3.24 6.70 -182.59 -1.22 2.02 16 34 H 0.11 0.34 7.66 -51.93 -0.40 -0.05 16 35 H 0.11 0.34 7.66 -51.93 -0.40 -0.05 16 36 H 0.16 0.26 6.30 -52.49 -0.33 -0.07 16 37 H 0.15 0.02 8.06 -52.49 -0.42 -0.40 16 38 H 0.15 0.11 8.06 -52.48 -0.42 -0.32 16 39 H 0.16 0.77 7.61 -52.49 -0.40 0.37 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -37.76 352.79 -9.25 -47.01 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.67 Total: 3.05 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -3.45 Total: 8.04 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.93 Total: -49.82 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.70 Total: -29.31 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.76 -9.25 -47.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.582 kcal (2) G-P(sol) polarization free energy of solvation -37.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds