Wall clock time and date at job start Tue Mar 31 2020 20:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99661 * 2 1 4 4 H 1.48502 * 109.47148 * 270.00123 * 3 2 1 5 5 H 1.48494 * 109.47262 * 30.00485 * 3 2 1 6 6 H 1.48500 * 109.46681 * 150.00410 * 3 2 1 7 7 C 1.37866 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99926 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00136 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99943 * 179.97438 * 10 9 7 12 12 O 1.21583 * 120.00180 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00234 * 179.97438 * 11 10 9 14 14 N 1.40102 * 119.99641 * 0.02562 * 13 11 10 15 15 C 1.34773 * 119.99905 * 180.02562 * 14 13 11 16 16 O 1.21276 * 120.00228 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99995 * 180.02562 * 15 14 13 18 18 O 1.42904 * 109.47159 * 179.97438 * 17 15 14 19 19 C 1.35898 * 116.99940 * 179.97438 * 18 17 15 20 20 C 1.38747 * 120.05546 * 0.02562 * 19 18 17 21 21 C 1.38125 * 119.94590 * 179.97438 * 20 19 18 22 22 C 1.38289 * 120.05159 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.11362 * 359.97438 * 22 21 20 24 24 C 1.38163 * 120.05442 * 0.02562 * 23 22 21 25 25 N 1.48007 * 120.02705 * 180.02562 * 24 23 22 26 26 O 1.21798 * 120.00276 * 359.97438 * 25 24 23 27 27 O 1.21799 * 120.00116 * 179.97438 * 25 24 23 28 28 H 0.97002 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47075 * 60.00426 * 9 7 2 30 30 H 1.08996 * 109.47410 * 299.99988 * 9 7 2 31 31 H 0.96997 * 119.99915 * 0.02562 * 10 9 7 32 32 H 0.96993 * 120.00477 * 179.97438 * 13 11 10 33 33 H 0.97006 * 120.00215 * 359.97438 * 14 13 11 34 34 H 1.08999 * 109.47357 * 59.99584 * 17 15 14 35 35 H 1.08995 * 109.46759 * 299.99718 * 17 15 14 36 36 H 1.08000 * 120.03041 * 359.95195 * 20 19 18 37 37 H 1.07993 * 119.97844 * 179.72247 * 21 20 19 38 38 H 1.08004 * 119.94567 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.97538 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5751 -0.0010 11 6 5.3249 -2.8214 -0.0020 12 8 6.1150 -1.8973 -0.0025 13 7 5.7743 -4.0921 -0.0013 14 7 4.8639 -5.1570 -0.0002 15 6 5.3131 -6.4276 0.0009 16 8 6.5055 -6.6492 0.0005 17 6 4.3338 -7.5731 0.0016 18 8 5.0483 -8.8107 0.0022 19 6 4.3082 -9.9504 0.0033 20 6 2.9226 -9.8792 0.0034 21 6 2.1725 -11.0390 0.0040 22 6 2.8016 -12.2705 0.0041 23 6 4.1820 -12.3442 0.0030 24 6 4.9367 -11.1869 0.0024 25 7 6.4147 -11.2665 0.0006 26 8 6.9661 -12.3525 0.0003 27 8 7.0795 -10.2460 -0.0004 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6799 -0.8911 31 1 3.3696 -3.3124 -0.0010 32 1 6.7279 -4.2693 -0.0024 33 1 3.9101 -4.9798 0.0005 34 1 3.7074 -7.5161 -0.8886 35 1 3.7070 -7.5146 0.8913 36 1 2.4308 -8.9176 0.0032 37 1 1.0940 -10.9841 0.0085 38 1 2.2134 -13.1764 0.0050 39 1 4.6710 -13.3072 0.0035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:26 Heat of formation + Delta-G solvation = -53.343331 kcal Electronic energy + Delta-G solvation = -27836.142877 eV Core-core repulsion = 23362.972424 eV Total energy + Delta-G solvation = -4473.170453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.18052 -41.85843 -41.29350 -40.26987 -38.73291 -37.48157 -36.87479 -36.26887 -34.35247 -33.22208 -32.68686 -31.52152 -29.88710 -29.01829 -27.42390 -24.52162 -24.11649 -23.42509 -22.39151 -22.11824 -20.68284 -20.62169 -19.63975 -19.11129 -18.72161 -18.62752 -18.55551 -17.66954 -17.58732 -16.88894 -16.78849 -16.42891 -16.31135 -16.14369 -15.75429 -15.59203 -15.37547 -15.00908 -14.45044 -14.35375 -14.03409 -13.93985 -13.22526 -13.06074 -12.78159 -12.67499 -12.62275 -12.58769 -12.34179 -12.19747 -12.07899 -11.93986 -11.78428 -11.61284 -11.26554 -10.89653 -10.64666 -10.21275 -9.72913 -9.44613 -8.37107 -6.43067 -1.17364 0.00371 0.32989 0.39702 0.54557 1.21075 1.36166 1.40322 1.51160 1.69331 1.98344 2.17608 2.31325 2.32730 2.99540 3.01778 3.32371 3.56616 3.77268 3.88163 3.97095 3.98319 3.99630 4.12082 4.47727 4.71965 4.72156 5.00904 5.05407 5.16001 5.18218 5.22156 5.24654 5.36189 5.38980 5.58410 5.84687 6.14034 6.17834 6.52448 6.55566 6.67886 7.13946 7.24234 7.38248 8.76550 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.002117 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.772577 B =13221.018681 C =14729.345355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.032 3.968 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.245 3.755 10 N -0.710 5.710 11 C 0.709 3.291 12 O -0.621 6.621 13 N -0.530 5.530 14 N -0.507 5.507 15 C 0.514 3.486 16 O -0.554 6.554 17 C 0.042 3.958 18 O -0.294 6.294 19 C 0.180 3.820 20 C -0.208 4.208 21 C -0.007 4.007 22 C -0.143 4.143 23 C -0.030 4.030 24 C -0.111 4.111 25 N 0.035 4.965 26 O -0.188 6.188 27 O -0.196 6.196 28 H 0.272 0.728 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.405 0.595 32 H 0.439 0.561 33 H 0.439 0.561 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.190 0.810 37 H 0.191 0.809 38 H 0.184 0.816 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -27.375 0.015 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.169 4.169 3 Si 0.753 3.247 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.089 0.911 9 C 0.121 3.879 10 N -0.366 5.366 11 C 0.408 3.592 12 O -0.498 6.498 13 N -0.286 5.286 14 N -0.262 5.262 15 C 0.300 3.700 16 O -0.429 6.429 17 C -0.036 4.036 18 O -0.204 6.204 19 C 0.131 3.869 20 C -0.227 4.227 21 C -0.025 4.025 22 C -0.161 4.161 23 C -0.049 4.049 24 C -0.197 4.197 25 N 0.544 4.456 26 O -0.400 6.400 27 O -0.404 6.404 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.241 0.759 32 H 0.285 0.715 33 H 0.284 0.716 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.207 0.793 37 H 0.208 0.792 38 H 0.201 0.799 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.822 -26.537 0.017 26.687 hybrid contribution 0.746 0.754 -0.015 1.061 sum -2.077 -25.783 0.002 25.866 Atomic orbital electron populations 1.69945 1.07450 1.28501 1.50655 1.25451 0.95431 1.02240 0.93794 0.85996 0.79423 0.79997 0.79320 1.19260 1.20246 1.18461 1.21205 0.89371 0.94838 1.52467 0.91113 1.19116 0.93574 0.79063 0.96154 1.45047 1.03715 1.10511 1.77288 1.15842 0.83671 0.81362 0.78333 1.90962 1.56322 1.41559 1.61005 1.44395 1.06426 0.96464 1.81340 1.44571 1.06444 0.98564 1.76647 1.20759 0.90152 0.82453 0.76607 1.90858 1.18385 1.84093 1.49526 1.22812 0.92492 0.78946 1.09369 1.86410 1.34978 1.12479 1.86572 1.19015 0.91945 0.83935 0.92013 1.21912 0.88679 1.04064 1.08030 1.22064 1.03305 0.90316 0.86768 1.21659 0.91517 1.01105 1.01868 1.21292 0.95380 0.96213 0.92009 1.20994 0.77683 0.96034 1.24956 1.43949 1.04825 0.99956 0.96853 1.94445 1.74642 1.16519 1.54434 1.94704 1.65574 1.24979 1.55171 0.91910 0.96652 0.96759 0.75851 0.71504 0.71569 0.83148 0.83141 0.79282 0.79222 0.79886 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.44 13.96 21.44 0.30 -51.14 16 2 C 0.03 1.66 5.47 84.65 0.46 2.12 16 3 Si 0.93 41.44 27.47 68.60 1.88 43.32 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -11.58 6.54 99.48 0.65 -10.93 16 7 C -0.54 -26.79 9.83 25.60 0.25 -26.54 16 8 H 0.07 3.55 7.84 -2.91 -0.02 3.52 16 9 C 0.24 10.94 4.50 85.63 0.38 11.32 16 10 N -0.71 -24.87 5.51 -482.30 -2.66 -27.53 16 11 C 0.71 25.41 8.68 179.05 1.55 26.96 16 12 O -0.62 -27.88 17.18 -3.98 -0.07 -27.95 16 13 N -0.53 -14.88 6.26 -184.75 -1.16 -16.04 16 14 N -0.51 -9.70 6.26 -173.54 -1.09 -10.78 16 15 C 0.51 10.56 8.02 87.66 0.70 11.26 16 16 O -0.55 -17.88 16.34 16.02 0.26 -17.62 16 17 C 0.04 0.43 5.22 71.24 0.37 0.80 16 18 O -0.29 -5.90 7.68 -63.38 -0.49 -6.39 16 19 C 0.18 2.70 6.67 22.50 0.15 2.85 16 20 C -0.21 -0.88 9.04 22.36 0.20 -0.68 16 21 C -0.01 0.00 10.04 22.25 0.22 0.22 16 22 C -0.14 -0.33 10.04 22.28 0.22 -0.11 16 23 C -0.03 -0.31 9.55 22.25 0.21 -0.10 16 24 C -0.11 -2.11 6.87 36.47 0.25 -1.86 16 25 N 0.04 1.01 4.45 -46.24 -0.21 0.80 16 26 O -0.19 -5.39 18.45 18.89 0.35 -5.04 16 27 O -0.20 -6.89 17.24 25.61 0.44 -6.45 16 28 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 30 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 31 H 0.40 11.02 6.24 -92.71 -0.58 10.44 16 32 H 0.44 12.90 8.10 -213.33 -1.73 11.18 16 33 H 0.44 5.41 6.70 -213.31 -1.43 3.98 16 34 H 0.15 0.25 7.66 -2.39 -0.02 0.23 16 35 H 0.15 0.25 7.66 -2.39 -0.02 0.23 16 36 H 0.19 -0.60 6.30 -2.91 -0.02 -0.62 16 37 H 0.19 -1.44 8.06 -2.91 -0.02 -1.46 16 38 H 0.18 -0.81 8.06 -2.91 -0.02 -0.83 16 39 H 0.16 1.42 7.61 -2.91 -0.02 1.40 16 Total: -1.00 -88.85 352.79 -0.06 -88.92 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -2.62 Total: 9.64 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 4.99 Total: 26.26 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.81 Total: -104.69 kcal Atomic # 8 Polarization: -63.94 SS G_CDS: 0.50 Total: -63.45 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Total: -88.85 -0.06 -88.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.572 kcal (2) G-P(sol) polarization free energy of solvation -88.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds