Wall clock time and date at job start Tue Mar 31 2020 20:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38397 * 119.84539 * 2 1 4 4 C 1.37922 * 120.14625 * 180.27450 * 3 2 1 5 5 C 1.39654 * 119.84981 * 359.73193 * 4 3 2 6 6 C 1.47719 * 120.14823 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99848 * 179.97438 * 6 5 4 8 8 O 1.34712 * 120.00140 * 359.97438 * 6 5 4 9 9 C 1.45197 * 116.99802 * 177.70928 * 8 6 5 10 10 C 1.50700 * 112.85032 * 65.17735 * 9 8 6 11 11 H 1.08001 * 120.00117 * 242.52531 * 10 9 8 12 12 C 1.37887 * 119.99894 * 62.52592 * 10 9 8 13 13 N 1.31510 * 119.99861 * 353.77386 * 12 10 9 14 14 Si 1.86798 * 119.99924 * 173.76995 * 12 10 9 15 15 H 1.48507 * 109.47114 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47222 * 119.99861 * 14 12 10 17 17 H 1.48498 * 109.47334 * 240.00211 * 14 12 10 18 18 C 1.53781 * 113.61850 * 293.98255 * 9 8 6 19 19 C 1.53961 * 87.01974 * 220.04985 * 18 9 8 20 20 C 1.53779 * 87.11118 * 25.35944 * 19 18 9 21 21 C 1.39606 * 119.69796 * 359.97438 * 5 4 3 22 22 C 1.37967 * 119.85286 * 0.02562 * 21 5 4 23 23 S 1.76197 * 119.93033 * 180.02562 * 22 21 5 24 24 C 1.81395 * 104.45395 * 114.99257 * 23 22 21 25 25 O 1.42104 * 104.27284 * 358.92348 * 23 22 21 26 26 O 1.42102 * 104.27567 * 231.06868 * 23 22 21 27 27 H 1.09003 * 109.46608 * 270.26964 * 1 2 3 28 28 H 1.08996 * 109.47365 * 30.27265 * 1 2 3 29 29 H 1.08998 * 109.47341 * 150.27251 * 1 2 3 30 30 H 1.07992 * 119.92445 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.07824 * 179.70489 * 4 3 2 32 32 H 0.96997 * 119.99698 * 185.01580 * 13 12 10 33 33 H 1.09003 * 113.61341 * 334.56627 * 18 9 8 34 34 H 1.08996 * 113.62042 * 105.47082 * 18 9 8 35 35 H 1.08997 * 113.53224 * 270.80871 * 19 18 9 36 36 H 1.09001 * 113.74570 * 139.94359 * 19 18 9 37 37 H 1.09002 * 113.61552 * 220.09230 * 20 19 18 38 38 H 1.09001 * 113.69128 * 89.20203 * 20 19 18 39 39 H 1.07999 * 120.07683 * 179.97438 * 21 5 4 40 40 H 1.08996 * 109.47199 * 300.00379 * 24 23 22 41 41 H 1.09001 * 109.46584 * 60.00005 * 24 23 22 42 42 H 1.08999 * 109.47206 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2004 0.0000 4 6 3.5750 1.2077 -0.0057 5 6 4.2764 0.0001 -0.0058 6 6 5.7536 0.0001 -0.0114 7 8 6.3610 -1.0518 -0.0110 8 8 6.4271 1.1668 -0.0168 9 6 7.8764 1.0914 0.0296 10 6 8.4688 0.4506 -1.1990 11 1 9.0266 -0.4701 -1.1122 12 6 8.2986 1.0398 -2.4339 13 7 7.5189 2.0915 -2.5589 14 14 9.1757 0.3444 -3.9294 15 1 9.9867 -0.8321 -3.5250 16 1 8.1727 -0.0712 -4.9427 17 1 10.0644 1.3830 -4.5095 18 6 8.4215 0.5166 1.3477 19 6 9.5280 1.5838 1.2621 20 6 8.5501 2.4181 0.4180 21 6 3.5752 -1.2071 0.0004 22 6 2.1956 -1.1999 0.0060 23 16 1.3086 -2.7223 0.0146 24 6 0.4460 -2.7348 1.6103 25 8 2.3218 -3.7183 -0.0123 26 8 0.3800 -2.5928 -1.0533 27 1 -0.3633 0.0048 1.0277 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3634 -0.8924 -0.5096 30 1 1.6521 2.1335 -0.0004 31 1 4.1113 2.1450 -0.0105 32 1 7.3412 2.4618 -3.4376 33 1 7.7487 0.6523 2.1945 34 1 8.7911 -0.5049 1.2589 35 1 10.4088 1.2541 0.7112 36 1 9.7745 2.0385 2.2216 37 1 9.0233 2.9294 -0.4203 38 1 7.9120 3.0753 1.0089 39 1 4.1115 -2.1445 -0.0001 40 1 1.1758 -2.6846 2.4182 41 1 -0.2211 -1.8748 1.6693 42 1 -0.1348 -3.6526 1.7022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788144543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:35 Heat of formation + Delta-G solvation = -99.243973 kcal Electronic energy + Delta-G solvation = -27631.351379 eV Core-core repulsion = 23670.190988 eV Total energy + Delta-G solvation = -3961.160391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.85304 -38.81485 -37.35698 -36.91704 -36.07046 -34.23859 -33.06094 -32.31495 -31.28542 -29.78179 -27.71337 -26.15700 -24.61107 -23.68404 -23.07280 -22.23947 -20.52351 -18.98585 -18.59237 -17.77410 -16.78867 -16.42233 -16.17233 -15.86172 -15.27483 -15.13503 -14.89756 -14.74003 -14.50932 -14.22244 -13.96447 -13.85856 -13.55817 -13.31852 -13.10630 -12.72658 -12.42735 -12.31127 -12.19916 -12.05460 -11.72189 -11.65726 -11.50384 -11.16400 -11.13133 -11.03040 -10.93454 -10.60798 -10.50917 -10.27384 -9.95907 -9.85940 -9.44359 -9.35568 -8.84808 -8.78447 -8.59495 -8.55477 -6.14489 -4.25929 -0.10538 0.72292 1.11405 2.70144 3.03137 3.24373 3.33725 3.39534 3.65641 3.77510 4.00966 4.14492 4.34607 4.48005 4.52677 4.61744 4.79547 5.04039 5.13424 5.18020 5.29797 5.34004 5.38443 5.51888 5.63561 5.71627 5.76826 5.81130 5.92816 5.96009 6.17050 6.26736 6.37326 6.44482 6.52301 6.59209 6.79519 6.88632 7.06940 7.24249 7.50126 7.74881 7.86387 8.28072 8.78360 9.11087 9.44480 10.90042 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.003489 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.495226 B = 8022.532208 C = 8361.640490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.025 3.975 3 C -0.155 4.155 4 C -0.005 4.005 5 C -0.128 4.128 6 C 0.502 3.498 7 O -0.501 6.501 8 O -0.338 6.338 9 C 0.240 3.760 10 C -0.514 4.514 11 H 0.070 0.930 12 C 0.076 3.924 13 N -0.862 5.862 14 Si 0.893 3.107 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.281 1.281 18 C -0.159 4.159 19 C -0.131 4.131 20 C -0.107 4.107 21 C 0.034 3.966 22 C -0.677 4.677 23 S 2.501 3.499 24 C -0.654 4.654 25 O -0.934 6.934 26 O -0.935 6.935 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.263 0.737 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.158 0.842 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 -1.766 9.747 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.024 3.976 3 C -0.174 4.174 4 C -0.024 4.024 5 C -0.130 4.130 6 C 0.345 3.655 7 O -0.391 6.391 8 O -0.254 6.254 9 C 0.206 3.794 10 C -0.551 4.551 11 H 0.088 0.912 12 C -0.130 4.130 13 N -0.498 5.498 14 Si 0.720 3.280 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.197 4.197 19 C -0.169 4.169 20 C -0.145 4.145 21 C 0.015 3.985 22 C -0.763 4.763 23 S 2.681 3.319 24 C -0.804 4.804 25 O -0.931 6.931 26 O -0.933 6.933 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.175 0.825 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.376 -2.481 8.982 17.979 hybrid contribution 0.565 0.479 -0.413 0.848 sum -14.811 -2.002 8.569 17.228 Atomic orbital electron populations 1.21718 0.90704 1.07217 1.03567 1.19664 0.95570 0.92067 0.90325 1.21147 0.94187 0.97728 1.04289 1.21913 0.93977 0.98756 0.87711 1.19794 0.92585 0.94020 1.06649 1.20496 0.86997 0.83809 0.74198 1.90747 1.69890 1.33137 1.45332 1.86528 1.25873 1.31733 1.81282 1.21262 0.72559 0.93423 0.92119 1.21005 1.34387 1.09091 0.90617 0.91217 1.25075 0.94621 0.94150 0.99167 1.70026 1.34480 1.21638 1.23639 0.86509 0.79811 0.79228 0.82449 1.19342 1.20828 1.20681 1.23566 0.98185 0.99176 0.98797 1.22563 0.97379 0.98232 0.98682 1.22902 0.96431 0.96651 0.98491 1.21084 0.91391 0.99304 0.86685 1.30134 1.05542 1.18438 1.22227 1.05116 0.75289 0.74196 0.77255 1.30303 1.15062 1.11857 1.23206 1.93596 1.56441 1.56501 1.86561 1.93533 1.64105 1.85771 1.49843 0.89818 0.89310 0.87743 0.84635 0.83342 0.92761 0.92245 0.91668 0.90169 0.92945 0.90684 0.92292 0.82462 0.84665 0.84905 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 8.46 36.01 0.30 -1.12 16 2 C 0.02 0.30 5.87 -104.52 -0.61 -0.32 16 3 C -0.15 -1.95 9.68 -39.64 -0.38 -2.33 16 4 C -0.01 -0.09 9.62 -39.17 -0.38 -0.46 16 5 C -0.13 -2.46 5.87 -104.99 -0.62 -3.07 16 6 C 0.50 11.89 7.46 34.60 0.26 12.15 16 7 O -0.50 -13.05 14.84 -19.24 -0.29 -13.34 16 8 O -0.34 -8.39 9.01 -40.52 -0.37 -8.76 16 9 C 0.24 5.99 0.47 -90.96 -0.04 5.95 16 10 C -0.51 -14.20 7.08 -34.44 -0.24 -14.44 16 11 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 12 C 0.08 2.09 5.30 -17.82 -0.09 1.99 16 13 N -0.86 -24.06 12.79 55.43 0.71 -23.36 16 14 Si 0.89 21.52 29.55 -169.99 -5.02 16.50 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.16 -3.49 6.57 -25.82 -0.17 -3.66 16 19 C -0.13 -2.59 7.81 -25.83 -0.20 -2.79 16 20 C -0.11 -2.39 7.28 -25.92 -0.19 -2.58 16 21 C 0.03 0.59 9.05 -39.17 -0.35 0.24 16 22 C -0.68 -9.20 5.57 -39.64 -0.22 -9.42 16 23 S 2.50 27.90 5.20 -107.50 -0.56 27.34 16 24 C -0.65 -3.72 10.59 101.05 1.07 -2.65 16 25 O -0.93 -14.00 16.73 -57.54 -0.96 -14.96 16 26 O -0.94 -12.34 15.32 -57.54 -0.88 -13.22 16 27 H 0.08 0.42 7.10 -51.93 -0.37 0.05 16 28 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.10 0.91 4.85 -51.93 -0.25 0.66 16 30 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.15 2.36 7.61 -52.49 -0.40 1.96 16 32 H 0.26 6.99 8.32 -40.82 -0.34 6.66 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.48 8.08 -51.93 -0.42 1.06 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.80 7.98 -51.93 -0.41 1.39 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.16 2.83 6.80 -52.49 -0.36 2.47 16 40 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.13 0.50 6.02 -51.92 -0.31 0.18 16 42 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -35.81 361.01 -9.25 -45.06 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.45 Total: 1.81 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.87 Total: -22.51 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.71 Total: -23.36 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.49 Total: -50.28 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 27.90 SS G_CDS: -0.56 Total: 27.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.81 -9.25 -45.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788144543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.187 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds