Wall clock time and date at job start Tue Mar 31 2020 20:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86799 * 119.99917 * 2 1 4 4 H 1.48496 * 109.46715 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47204 * 300.00134 * 3 2 1 6 6 H 1.48506 * 109.46835 * 60.00215 * 3 2 1 7 7 C 1.40299 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99727 * 168.61877 * 7 2 1 9 9 C 1.40862 * 120.00012 * 348.62353 * 7 2 1 10 10 C 1.40708 * 120.32937 * 323.38754 * 9 7 2 11 11 C 1.37599 * 119.88352 * 180.02562 * 10 9 7 12 12 C 1.38834 * 120.58633 * 359.97438 * 11 10 9 13 13 C 1.38203 * 120.68166 * 0.02562 * 12 11 10 14 14 C 1.39290 * 120.08601 * 359.97438 * 13 12 11 15 15 C 1.47290 * 120.28912 * 180.02562 * 14 13 12 16 16 O 1.21535 * 119.99774 * 174.00637 * 15 14 13 17 17 O 1.34801 * 119.99977 * 354.00931 * 15 14 13 18 18 C 1.45199 * 117.00052 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46957 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.38443 * 304.99419 * 19 18 17 21 21 C 1.52589 * 109.38545 * 64.79025 * 19 18 17 22 22 C 1.52641 * 110.61503 * 190.24935 * 21 19 18 23 23 C 1.53038 * 109.89656 * 289.85689 * 22 21 19 24 24 S 1.81672 * 108.99743 * 63.68917 * 23 22 21 25 25 O 1.42103 * 108.66392 * 191.36876 * 24 23 22 26 26 O 1.42102 * 108.65892 * 60.03584 * 24 23 22 27 27 C 1.53036 * 109.38077 * 185.21055 * 19 18 17 28 28 H 0.97001 * 120.00191 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.06131 * 0.04531 * 10 9 7 30 30 H 1.08005 * 119.70860 * 179.72450 * 11 10 9 31 31 H 1.07998 * 119.66145 * 179.97438 * 12 11 10 32 32 H 1.08000 * 119.95719 * 179.97438 * 13 12 11 33 33 H 1.09002 * 109.46703 * 299.99618 * 18 17 15 34 34 H 1.08998 * 109.47384 * 59.99912 * 18 17 15 35 35 H 1.08998 * 109.24187 * 310.44025 * 21 19 18 36 36 H 1.08990 * 109.24575 * 69.84390 * 21 19 18 37 37 H 1.09005 * 109.39063 * 169.74933 * 22 21 19 38 38 H 1.08998 * 109.37818 * 49.95714 * 22 21 19 39 39 H 1.09000 * 109.54801 * 303.83690 * 23 22 21 40 40 H 1.09000 * 109.62807 * 183.59520 * 23 22 21 41 41 H 1.08999 * 109.54941 * 296.04280 * 27 19 18 42 42 H 1.08996 * 109.55123 * 56.33980 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7001 1.3463 0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8814 2.3964 1.2126 7 6 2.0076 -1.2151 -0.0005 8 1 3.0716 -1.2242 -0.1851 9 6 1.3240 -2.4230 0.2395 10 6 0.2670 -2.4691 1.1672 11 6 -0.3941 -3.6541 1.3950 12 6 -0.0283 -4.8088 0.7165 13 6 1.0063 -4.7907 -0.1996 14 6 1.6947 -3.6065 -0.4521 15 6 2.7977 -3.5820 -1.4279 16 8 3.3227 -2.5269 -1.7251 17 8 3.2247 -4.7297 -1.9915 18 6 4.3152 -4.6300 -2.9450 19 6 4.6586 -6.0238 -3.4745 20 1 4.8725 -6.6867 -2.6361 21 6 3.4734 -6.5719 -4.2640 22 6 3.6812 -8.0486 -4.5895 23 6 4.7959 -8.2015 -5.6269 24 16 6.3562 -7.6080 -4.9102 25 8 7.3221 -7.5033 -5.9471 26 8 6.6520 -8.3854 -3.7580 27 6 5.8902 -5.9345 -4.3784 28 1 -0.4850 0.8400 0.0004 29 1 -0.0251 -1.5758 1.6992 30 1 -1.2021 -3.6872 2.1109 31 1 -0.5572 -5.7310 0.9072 32 1 1.2813 -5.6960 -0.7205 33 1 4.0148 -3.9904 -3.7749 34 1 5.1892 -4.2020 -2.4541 35 1 2.5650 -6.4602 -3.6721 36 1 3.3685 -6.0091 -5.1915 37 1 2.7561 -8.4649 -4.9884 38 1 3.9566 -8.5840 -3.6809 39 1 4.5538 -7.6129 -6.5118 40 1 4.8973 -9.2510 -5.9033 41 1 5.6579 -5.3257 -5.2522 42 1 6.7154 -5.4840 -3.8270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791644960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:54 Heat of formation + Delta-G solvation = -150.446521 kcal Electronic energy + Delta-G solvation = -26869.289532 eV Core-core repulsion = 22905.908832 eV Total energy + Delta-G solvation = -3963.380700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -39.60529 -38.10446 -37.29974 -36.92210 -36.28601 -35.23510 -33.78233 -32.77090 -30.19608 -29.73881 -28.07829 -26.84456 -25.50995 -23.03125 -22.40761 -21.13414 -20.68037 -19.77127 -19.07488 -17.54810 -17.07558 -16.89589 -16.47111 -15.93661 -15.83486 -15.58702 -15.33135 -15.13046 -14.51780 -14.34465 -13.96113 -13.49502 -13.41679 -13.28933 -12.88523 -12.72591 -12.67914 -12.36899 -12.27628 -12.26713 -11.79208 -11.64394 -11.63922 -11.43662 -11.23667 -11.12799 -11.06021 -10.90474 -10.75119 -10.66148 -10.35678 -10.24313 -9.96511 -9.76316 -9.38006 -8.90626 -7.72613 -7.48915 -6.94386 -4.54277 -0.27282 2.13253 2.34537 2.72240 3.03172 3.11624 3.13147 3.28622 3.40152 3.72098 3.82123 3.87836 4.18355 4.21387 4.38198 4.44801 4.54132 4.64785 4.76753 4.97984 5.17856 5.23047 5.31939 5.38992 5.46200 5.59210 5.68722 5.70372 5.87882 6.00484 6.05382 6.11065 6.27315 6.51198 6.85037 6.97124 7.07330 7.22811 7.37972 7.53603 7.80928 7.86955 8.05909 8.49791 8.63902 8.71804 9.00561 10.02059 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.002789 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.157223 B =10036.291959 C =11226.791447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.419 4.419 8 H 0.103 0.897 9 C 0.151 3.849 10 C -0.148 4.148 11 C -0.089 4.089 12 C -0.246 4.246 13 C -0.037 4.037 14 C -0.248 4.248 15 C 0.505 3.495 16 O -0.514 6.514 17 O -0.368 6.368 18 C 0.079 3.921 19 C -0.075 4.075 20 H 0.103 0.897 21 C -0.139 4.139 22 C -0.109 4.109 23 C -0.603 4.603 24 S 2.421 3.579 25 O -0.946 6.946 26 O -0.934 6.934 27 C -0.601 4.601 28 H 0.284 0.716 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -11.038 -8.687 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.447 4.447 8 H 0.121 0.879 9 C 0.147 3.853 10 C -0.167 4.167 11 C -0.108 4.108 12 C -0.265 4.265 13 C -0.056 4.056 14 C -0.251 4.251 15 C 0.356 3.644 16 O -0.404 6.404 17 O -0.287 6.287 18 C 0.003 3.997 19 C -0.095 4.095 20 H 0.122 0.878 21 C -0.176 4.176 22 C -0.147 4.147 23 C -0.732 4.732 24 S 2.603 3.397 25 O -0.943 6.943 26 O -0.932 6.932 27 C -0.730 4.730 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.926 -11.008 -8.751 15.260 hybrid contribution -0.420 1.330 -0.378 1.445 sum 5.506 -9.678 -9.129 14.399 Atomic orbital electron populations 1.69707 1.07810 1.29853 1.33686 1.26105 0.94802 1.01777 0.92082 0.86113 0.81270 0.80094 0.78510 1.18019 1.19779 1.19677 1.20139 0.97605 0.89724 1.37230 0.87907 1.17444 0.89602 0.90973 0.87307 1.21242 0.99135 0.96450 0.99886 1.20858 0.98030 0.93535 0.98348 1.20369 1.03352 0.97520 1.05281 1.20830 0.93866 0.95668 0.95191 1.18774 1.03465 0.96954 1.05936 1.21381 0.82797 0.80469 0.79794 1.90754 1.56960 1.31043 1.61620 1.86553 1.49607 1.37581 1.54976 1.22676 0.89698 0.95316 0.92004 1.20857 0.92072 0.98733 0.97797 0.87843 1.21814 0.99886 0.94623 1.01314 1.21307 0.98099 0.97697 0.97627 1.30240 1.19427 1.12809 1.10761 1.07937 0.77513 0.78249 0.75996 1.93597 1.56612 1.86349 1.57725 1.93600 1.82841 1.67253 1.49474 1.30320 1.07866 1.24255 1.10549 0.90491 0.86713 0.88795 0.88729 0.87902 0.91435 0.91412 0.88200 0.90680 0.89306 0.89481 0.84919 0.84911 0.84516 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.65 11.44 55.57 0.64 -19.01 16 2 C 0.07 1.77 5.20 -17.29 -0.09 1.68 16 3 Si 0.92 18.82 29.58 -169.99 -5.03 13.79 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.42 -11.08 7.56 -37.82 -0.29 -11.37 16 8 H 0.10 2.80 6.09 -52.49 -0.32 2.48 16 9 C 0.15 3.90 5.46 -106.53 -0.58 3.32 16 10 C -0.15 -3.61 8.62 -38.88 -0.34 -3.95 16 11 C -0.09 -1.92 10.01 -39.59 -0.40 -2.32 16 12 C -0.25 -5.07 10.03 -39.37 -0.39 -5.47 16 13 C -0.04 -0.79 9.60 -39.20 -0.38 -1.17 16 14 C -0.25 -5.97 5.92 -104.39 -0.62 -6.59 16 15 C 0.51 11.50 7.84 34.41 0.27 11.77 16 16 O -0.51 -12.82 13.44 -19.29 -0.26 -13.08 16 17 O -0.37 -6.70 8.84 -40.77 -0.36 -7.06 16 18 C 0.08 1.11 4.84 37.16 0.18 1.29 16 19 C -0.08 -0.76 2.26 -90.81 -0.21 -0.96 16 20 H 0.10 1.05 8.00 -51.93 -0.42 0.63 16 21 C -0.14 -1.19 4.91 -27.13 -0.13 -1.32 16 22 C -0.11 -0.74 5.74 -26.90 -0.15 -0.89 16 23 C -0.60 -3.45 6.34 37.18 0.24 -3.21 16 24 S 2.42 20.28 5.31 -107.50 -0.57 19.71 16 25 O -0.95 -11.04 18.10 -57.81 -1.05 -12.09 16 26 O -0.93 -11.17 17.93 -57.81 -1.04 -12.20 16 27 C -0.60 -4.61 5.62 37.18 0.21 -4.40 16 28 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 29 H 0.11 2.83 6.86 -52.49 -0.36 2.47 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.10 1.91 7.62 -52.49 -0.40 1.51 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.01 7.53 -51.93 -0.39 0.62 16 36 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.61 8.00 -51.93 -0.42 0.19 16 39 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -33.60 359.52 -10.58 -44.18 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.66 Total: 3.93 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -2.68 Total: -23.58 kcal Atomic # 7 Polarization: -19.65 SS G_CDS: 0.64 Total: -19.01 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -2.70 Total: -44.43 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 16 Polarization: 20.28 SS G_CDS: -0.57 Total: 19.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.60 -10.58 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791644960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.265 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds