Wall clock time and date at job start Tue Mar 31 2020 20:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86799 * 119.99917 * 2 1 4 4 H 1.48496 * 109.46715 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47204 * 300.00134 * 3 2 1 6 6 H 1.48506 * 109.46835 * 60.00215 * 3 2 1 7 7 C 1.40299 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99727 * 168.61877 * 7 2 1 9 9 C 1.40862 * 120.00012 * 348.62353 * 7 2 1 10 10 C 1.40708 * 120.32937 * 323.38754 * 9 7 2 11 11 C 1.37599 * 119.88352 * 180.02562 * 10 9 7 12 12 C 1.38834 * 120.58633 * 359.97438 * 11 10 9 13 13 C 1.38203 * 120.68166 * 0.02562 * 12 11 10 14 14 C 1.39290 * 120.08601 * 359.97438 * 13 12 11 15 15 C 1.47290 * 120.28912 * 180.02562 * 14 13 12 16 16 O 1.21535 * 119.99774 * 174.00637 * 15 14 13 17 17 O 1.34801 * 119.99977 * 354.00931 * 15 14 13 18 18 C 1.45199 * 117.00052 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46957 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.38443 * 304.99419 * 19 18 17 21 21 C 1.52589 * 109.38545 * 64.79025 * 19 18 17 22 22 C 1.52641 * 110.61503 * 190.24935 * 21 19 18 23 23 C 1.53038 * 109.89656 * 289.85689 * 22 21 19 24 24 S 1.81672 * 108.99743 * 63.68917 * 23 22 21 25 25 O 1.42103 * 108.66392 * 191.36876 * 24 23 22 26 26 O 1.42102 * 108.65892 * 60.03584 * 24 23 22 27 27 C 1.53036 * 109.38077 * 185.21055 * 19 18 17 28 28 H 0.97001 * 120.00191 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.06131 * 0.04531 * 10 9 7 30 30 H 1.08005 * 119.70860 * 179.72450 * 11 10 9 31 31 H 1.07998 * 119.66145 * 179.97438 * 12 11 10 32 32 H 1.08000 * 119.95719 * 179.97438 * 13 12 11 33 33 H 1.09002 * 109.46703 * 299.99618 * 18 17 15 34 34 H 1.08998 * 109.47384 * 59.99912 * 18 17 15 35 35 H 1.08998 * 109.24187 * 310.44025 * 21 19 18 36 36 H 1.08990 * 109.24575 * 69.84390 * 21 19 18 37 37 H 1.09005 * 109.39063 * 169.74933 * 22 21 19 38 38 H 1.08998 * 109.37818 * 49.95714 * 22 21 19 39 39 H 1.09000 * 109.54801 * 303.83690 * 23 22 21 40 40 H 1.09000 * 109.62807 * 183.59520 * 23 22 21 41 41 H 1.08999 * 109.54941 * 296.04280 * 27 19 18 42 42 H 1.08996 * 109.55123 * 56.33980 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7001 1.3463 0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8814 2.3964 1.2126 7 6 2.0076 -1.2151 -0.0005 8 1 3.0716 -1.2242 -0.1851 9 6 1.3240 -2.4230 0.2395 10 6 0.2670 -2.4691 1.1672 11 6 -0.3941 -3.6541 1.3950 12 6 -0.0283 -4.8088 0.7165 13 6 1.0063 -4.7907 -0.1996 14 6 1.6947 -3.6065 -0.4521 15 6 2.7977 -3.5820 -1.4279 16 8 3.3227 -2.5269 -1.7251 17 8 3.2247 -4.7297 -1.9915 18 6 4.3152 -4.6300 -2.9450 19 6 4.6586 -6.0238 -3.4745 20 1 4.8725 -6.6867 -2.6361 21 6 3.4734 -6.5719 -4.2640 22 6 3.6812 -8.0486 -4.5895 23 6 4.7959 -8.2015 -5.6269 24 16 6.3562 -7.6080 -4.9102 25 8 7.3221 -7.5033 -5.9471 26 8 6.6520 -8.3854 -3.7580 27 6 5.8902 -5.9345 -4.3784 28 1 -0.4850 0.8400 0.0004 29 1 -0.0251 -1.5758 1.6992 30 1 -1.2021 -3.6872 2.1109 31 1 -0.5572 -5.7310 0.9072 32 1 1.2813 -5.6960 -0.7205 33 1 4.0148 -3.9904 -3.7749 34 1 5.1892 -4.2020 -2.4541 35 1 2.5650 -6.4602 -3.6721 36 1 3.3685 -6.0091 -5.1915 37 1 2.7561 -8.4649 -4.9884 38 1 3.9566 -8.5840 -3.6809 39 1 4.5538 -7.6129 -6.5118 40 1 4.8973 -9.2510 -5.9033 41 1 5.6579 -5.3257 -5.2522 42 1 6.7154 -5.4840 -3.8270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791644960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:53 Heat of formation + Delta-G solvation = -171.703162 kcal Electronic energy + Delta-G solvation = -26870.211289 eV Core-core repulsion = 22905.908832 eV Total energy + Delta-G solvation = -3964.302457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20492 -39.32631 -38.57091 -37.88214 -37.07888 -36.75806 -35.57949 -33.52084 -31.95988 -31.50317 -28.80362 -27.93162 -27.19805 -24.45544 -23.37062 -22.87562 -21.51195 -21.42651 -19.79168 -19.36234 -18.41149 -17.92145 -17.43046 -17.20914 -17.11595 -16.85333 -16.62872 -15.99409 -15.94287 -15.41853 -15.26435 -15.03364 -14.53274 -14.38381 -14.08749 -13.91816 -13.85056 -13.57043 -13.47029 -13.20685 -13.08696 -12.93691 -12.89541 -12.58822 -12.48837 -12.38278 -12.31761 -12.19665 -11.98087 -11.79933 -11.66999 -11.50378 -11.39047 -11.17274 -10.99073 -10.69295 -9.50759 -9.30118 -8.75243 -6.45029 -0.92673 0.34095 0.98708 1.33799 1.46462 1.48615 1.67364 2.00388 2.04721 2.18502 2.71429 2.72966 2.99741 3.47219 3.53540 3.62605 3.73711 3.80821 3.96668 4.10791 4.24458 4.33752 4.39309 4.42849 4.54260 4.61589 4.62546 4.68394 4.78736 4.85747 4.96945 5.06291 5.11476 5.17618 5.26757 5.28912 5.33323 5.52699 5.64063 5.80127 6.00229 6.06099 6.28452 6.61565 6.77608 6.87241 7.26417 8.23925 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.002789 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.157223 B =10036.291959 C =11226.791447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.036 3.964 3 Si 0.979 3.021 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.123 3.877 10 C -0.175 4.175 11 C -0.082 4.082 12 C -0.236 4.236 13 C -0.037 4.037 14 C -0.272 4.272 15 C 0.506 3.494 16 O -0.544 6.544 17 O -0.358 6.358 18 C 0.069 3.931 19 C -0.071 4.071 20 H 0.099 0.901 21 C -0.142 4.142 22 C -0.109 4.109 23 C -0.581 4.581 24 S 2.428 3.572 25 O -0.982 6.982 26 O -0.977 6.977 27 C -0.599 4.599 28 H 0.293 0.707 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -12.787 -9.900 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.120 3.880 10 C -0.195 4.195 11 C -0.101 4.101 12 C -0.255 4.255 13 C -0.055 4.055 14 C -0.275 4.275 15 C 0.357 3.643 16 O -0.437 6.437 17 O -0.277 6.277 18 C -0.006 4.006 19 C -0.090 4.090 20 H 0.117 0.883 21 C -0.179 4.179 22 C -0.147 4.147 23 C -0.714 4.714 24 S 2.615 3.385 25 O -0.979 6.979 26 O -0.974 6.974 27 C -0.728 4.728 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.180 0.820 40 H 0.172 0.828 41 H 0.180 0.820 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.897 -12.788 -9.948 16.926 hybrid contribution -0.148 1.662 -0.039 1.669 sum 4.749 -11.126 -9.988 15.688 Atomic orbital electron populations 1.69719 1.08688 1.31016 1.34691 1.26771 0.95583 1.04261 0.91380 0.85209 0.79135 0.76394 0.79303 1.19220 1.19036 1.17787 1.20100 0.96900 0.91347 1.40328 0.90116 1.17807 0.90532 0.91713 0.87994 1.21218 1.00241 0.97351 1.00645 1.21253 0.97859 0.92754 0.98224 1.20861 1.02475 0.98585 1.03577 1.21176 0.93437 0.95654 0.95242 1.19155 1.04401 0.97616 1.06301 1.21329 0.82407 0.80982 0.79597 1.90731 1.57925 1.32481 1.62592 1.86505 1.50630 1.35145 1.55381 1.23082 0.88033 0.98376 0.91096 1.20848 0.93856 0.95840 0.98463 0.88263 1.21859 0.98125 0.96294 1.01650 1.21328 0.99277 0.96208 0.97932 1.30083 1.15735 1.14497 1.11080 1.07494 0.78368 0.77780 0.74818 1.93551 1.59252 1.86779 1.58295 1.93545 1.84358 1.68307 1.51217 1.30302 1.06825 1.24529 1.11148 0.89666 0.88120 0.85632 0.84675 0.84956 0.91126 0.92139 0.89774 0.88709 0.87200 0.89922 0.82015 0.82810 0.81963 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.99 11.44 21.89 0.25 -41.74 16 2 C 0.04 1.85 5.20 85.37 0.44 2.30 16 3 Si 0.98 39.82 29.58 68.60 2.03 41.85 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.46 -25.50 7.56 23.41 0.18 -25.32 16 8 H 0.08 4.71 6.09 -2.91 -0.02 4.69 16 9 C 0.12 6.59 5.46 -21.10 -0.12 6.47 16 10 C -0.18 -8.70 8.62 22.72 0.20 -8.51 16 11 C -0.08 -3.42 10.01 22.26 0.22 -3.20 16 12 C -0.24 -9.02 10.03 22.40 0.22 -8.80 16 13 C -0.04 -1.51 9.60 22.51 0.22 -1.29 16 14 C -0.27 -13.25 5.92 -19.71 -0.12 -13.36 16 15 C 0.51 23.56 7.84 70.20 0.55 24.11 16 16 O -0.54 -28.38 13.44 19.72 0.27 -28.11 16 17 O -0.36 -13.00 8.84 -57.12 -0.50 -13.50 16 18 C 0.07 1.93 4.84 71.98 0.35 2.28 16 19 C -0.07 -1.32 2.26 -10.92 -0.02 -1.35 16 20 H 0.10 1.94 8.00 -2.39 -0.02 1.92 16 21 C -0.14 -2.05 4.91 30.34 0.15 -1.90 16 22 C -0.11 -1.10 5.74 30.49 0.17 -0.92 16 23 C -0.58 -4.47 6.34 71.99 0.46 -4.01 16 24 S 2.43 37.12 5.31 -56.49 -0.30 36.82 16 25 O -0.98 -21.89 18.10 -127.40 -2.31 -24.20 16 26 O -0.98 -22.93 17.93 -127.40 -2.28 -25.22 16 27 C -0.60 -8.26 5.62 71.99 0.40 -7.86 16 28 H 0.29 13.47 8.29 -92.71 -0.77 12.71 16 29 H 0.10 5.16 6.86 -2.91 -0.02 5.14 16 30 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 31 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.13 4.53 7.62 -2.91 -0.02 4.51 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.52 7.53 -2.39 -0.02 1.50 16 36 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 37 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.08 0.94 8.00 -2.39 -0.02 0.93 16 39 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.16 1.38 8.14 -2.39 -0.02 1.37 16 42 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -76.44 359.52 1.49 -74.95 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 1.03 Total: 20.51 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 3.31 Total: -41.36 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.25 Total: -41.74 kcal Atomic # 8 Polarization: -86.20 SS G_CDS: -4.83 Total: -91.03 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 16 Polarization: 37.12 SS G_CDS: -0.30 Total: 36.82 kcal Total: -76.44 1.49 -74.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791644960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.750 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds