Wall clock time and date at job start Tue Mar 31 2020 20:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48498 * 109.47235 * 239.99563 * 3 2 1 5 5 H 1.48500 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47121 * 119.99813 * 3 2 1 7 7 C 1.40292 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99688 * 170.76609 * 7 2 1 9 9 C 1.40861 * 120.00364 * 350.75707 * 7 2 1 10 10 C 1.40709 * 120.33102 * 325.83531 * 9 7 2 11 11 C 1.37600 * 119.88084 * 179.97438 * 10 9 7 12 12 C 1.38837 * 120.58874 * 0.02562 * 11 10 9 13 13 C 1.38200 * 120.68183 * 359.97438 * 12 11 10 14 14 C 1.39295 * 120.08472 * 359.97438 * 13 12 11 15 15 C 1.47286 * 120.28804 * 180.02562 * 14 13 12 16 16 O 1.21527 * 120.00448 * 174.20590 * 15 14 13 17 17 O 1.34814 * 119.99857 * 354.20961 * 15 14 13 18 18 C 1.45195 * 116.99724 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46978 * 179.97438 * 18 17 15 20 20 H 1.09003 * 109.38087 * 55.20636 * 19 18 17 21 21 C 1.52581 * 109.38306 * 295.52479 * 19 18 17 22 22 C 1.52595 * 110.64079 * 169.85355 * 21 19 18 23 23 C 1.53032 * 109.98282 * 69.98961 * 22 21 19 24 24 S 1.81676 * 108.99854 * 296.34547 * 23 22 21 25 25 O 1.42093 * 108.66442 * 299.97608 * 24 23 22 26 26 O 1.42095 * 108.66155 * 168.62989 * 24 23 22 27 27 C 1.53032 * 109.38636 * 174.99964 * 19 18 17 28 28 H 0.96995 * 119.99721 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.05561 * 0.03819 * 10 9 7 30 30 H 1.08005 * 119.70285 * 180.29496 * 11 10 9 31 31 H 1.07990 * 119.66050 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.95982 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.47399 * 299.99626 * 18 17 15 34 34 H 1.08997 * 109.47401 * 60.00303 * 18 17 15 35 35 H 1.09001 * 109.24394 * 290.15367 * 21 19 18 36 36 H 1.09005 * 109.24619 * 49.55815 * 21 19 18 37 37 H 1.09001 * 109.38751 * 309.82696 * 22 21 19 38 38 H 1.09005 * 109.29899 * 190.08864 * 22 21 19 39 39 H 1.09002 * 109.54783 * 176.49866 * 23 22 21 40 40 H 1.09000 * 109.63260 * 56.25418 * 23 22 21 41 41 H 1.09004 * 109.55227 * 303.66002 * 27 19 18 42 42 H 1.09001 * 109.55456 * 63.94968 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0940 1.6964 -1.2124 5 1 1.2751 2.7464 -0.0006 6 1 3.0939 1.6964 1.2126 7 6 2.0076 -1.2150 0.0005 8 1 3.0771 -1.2211 -0.1495 9 6 1.3170 -2.4269 0.1970 10 6 0.1989 -2.4774 1.0498 11 6 -0.4691 -3.6661 1.2346 12 6 -0.0498 -4.8203 0.5867 13 6 1.0453 -4.7978 -0.2560 14 6 1.7417 -3.6095 -0.4643 15 6 2.9090 -3.5803 -1.3620 16 8 3.4486 -2.5231 -1.6229 17 8 3.3790 -4.7263 -1.8942 18 6 4.5320 -4.6220 -2.7704 19 6 4.9181 -6.0145 -3.2732 20 1 4.0544 -6.4799 -3.7483 21 6 5.3680 -6.8720 -2.0941 22 6 5.5199 -8.3304 -2.5166 23 6 6.7267 -8.4829 -3.4452 24 16 6.4261 -7.5355 -4.9660 25 8 5.2585 -8.0447 -5.5956 26 8 7.6390 -7.4609 -5.7025 27 6 6.0528 -5.8900 -4.2925 28 1 -0.4849 0.8400 -0.0004 29 1 -0.1349 -1.5847 1.5575 30 1 -1.3299 -3.7006 1.8860 31 1 -0.5849 -5.7452 0.7429 32 1 1.3615 -5.7025 -0.7537 33 1 4.2867 -3.9839 -3.6193 34 1 5.3682 -4.1899 -2.2207 35 1 6.3253 -6.5030 -1.7261 36 1 4.6272 -6.8042 -1.2972 37 1 4.6186 -8.6517 -3.0387 38 1 5.6647 -8.9489 -1.6307 39 1 6.8658 -9.5353 -3.6927 40 1 7.6203 -8.1034 -2.9497 41 1 5.7459 -5.2262 -5.1007 42 1 6.9395 -5.4862 -3.8037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791644966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:00 Heat of formation + Delta-G solvation = -150.022444 kcal Electronic energy + Delta-G solvation = -26864.009230 eV Core-core repulsion = 22900.646919 eV Total energy + Delta-G solvation = -3963.362311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -39.60386 -38.10393 -37.29637 -36.91919 -36.28666 -35.23677 -33.80645 -32.77108 -30.19023 -29.70666 -28.08204 -26.84528 -25.51963 -23.02863 -22.40152 -21.12124 -20.67327 -19.76917 -19.07453 -17.55936 -17.07518 -16.89929 -16.45656 -15.93409 -15.81440 -15.63315 -15.27799 -15.16690 -14.51663 -14.33784 -13.97029 -13.49556 -13.41182 -13.27745 -12.86964 -12.74023 -12.67051 -12.36958 -12.27607 -12.25604 -11.81844 -11.65199 -11.63445 -11.35546 -11.20977 -11.19062 -11.00033 -10.91579 -10.76183 -10.68353 -10.35801 -10.24886 -9.96861 -9.77656 -9.38785 -8.87426 -7.71522 -7.49854 -6.94055 -4.55501 -0.27242 2.14289 2.34596 2.75047 3.01268 3.06057 3.16851 3.28893 3.40370 3.72133 3.82808 3.86441 4.18302 4.21295 4.38214 4.44709 4.54297 4.64644 4.76766 4.97919 5.17727 5.22948 5.31825 5.38999 5.48299 5.59246 5.68699 5.70459 5.88228 6.00401 6.06898 6.11983 6.29260 6.52568 6.86708 6.98869 7.07839 7.23799 7.39383 7.55623 7.83342 7.87369 8.07164 8.49626 8.64352 8.71957 9.00983 10.00509 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.002784 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.069305 B =10055.135608 C =11249.793325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.417 4.417 8 H 0.104 0.896 9 C 0.148 3.852 10 C -0.149 4.149 11 C -0.090 4.090 12 C -0.247 4.247 13 C -0.037 4.037 14 C -0.251 4.251 15 C 0.505 3.495 16 O -0.515 6.515 17 O -0.368 6.368 18 C 0.079 3.921 19 C -0.076 4.076 20 H 0.103 0.897 21 C -0.139 4.139 22 C -0.109 4.109 23 C -0.603 4.603 24 S 2.421 3.579 25 O -0.934 6.934 26 O -0.946 6.946 27 C -0.601 4.601 28 H 0.286 0.714 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.872 -11.671 -3.122 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.149 4.149 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.445 4.445 8 H 0.122 0.878 9 C 0.144 3.856 10 C -0.168 4.168 11 C -0.109 4.109 12 C -0.267 4.267 13 C -0.055 4.055 14 C -0.254 4.254 15 C 0.356 3.644 16 O -0.406 6.406 17 O -0.287 6.287 18 C 0.003 3.997 19 C -0.095 4.095 20 H 0.121 0.879 21 C -0.176 4.176 22 C -0.147 4.147 23 C -0.732 4.732 24 S 2.603 3.397 25 O -0.932 6.932 26 O -0.943 6.943 27 C -0.730 4.730 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.897 -11.481 -4.137 15.713 hybrid contribution 0.412 1.153 0.601 1.364 sum 10.309 -10.328 -3.536 15.015 Atomic orbital electron populations 1.69693 1.07815 1.30050 1.33429 1.26147 0.94847 1.01902 0.92035 0.86175 0.80021 0.79162 0.80385 1.18545 1.20251 1.18612 1.20172 0.97298 0.89628 1.37389 0.87808 1.17445 0.90139 0.90935 0.87093 1.21316 0.98381 0.96529 1.00548 1.20867 0.98013 0.93517 0.98472 1.20365 1.01934 0.97499 1.06863 1.20822 0.93883 0.95667 0.95165 1.18741 1.01181 0.96832 1.08648 1.21391 0.83776 0.80485 0.78754 1.90742 1.58992 1.30834 1.60005 1.86556 1.45046 1.37597 1.59511 1.22672 0.88026 0.95285 0.93706 1.20854 0.96639 0.97281 0.94711 0.87864 1.21803 1.03771 0.93117 0.98904 1.21297 0.95512 0.97982 0.99958 1.30238 1.08069 1.15058 1.19862 1.07932 0.75300 0.78717 0.77735 1.93600 1.49344 1.77774 1.72438 1.93596 1.46314 1.86124 1.68254 1.30319 1.08222 1.23791 1.10650 0.90346 0.86257 0.88833 0.88781 0.87921 0.91411 0.91456 0.90716 0.88165 0.89483 0.89321 0.84918 0.84918 0.84326 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.60 11.14 55.57 0.62 -18.98 16 2 C 0.07 1.73 5.25 -17.30 -0.09 1.64 16 3 Si 0.92 18.78 29.57 -169.99 -5.03 13.75 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.42 -11.01 7.67 -37.82 -0.29 -11.30 16 8 H 0.10 2.80 5.93 -52.48 -0.31 2.49 16 9 C 0.15 3.83 5.51 -106.53 -0.59 3.25 16 10 C -0.15 -3.64 8.62 -38.88 -0.34 -3.97 16 11 C -0.09 -1.95 10.01 -39.59 -0.40 -2.35 16 12 C -0.25 -5.14 10.03 -39.37 -0.39 -5.53 16 13 C -0.04 -0.79 9.60 -39.20 -0.38 -1.17 16 14 C -0.25 -6.05 5.92 -104.39 -0.62 -6.67 16 15 C 0.51 11.50 7.84 34.41 0.27 11.77 16 16 O -0.52 -12.85 13.39 -19.28 -0.26 -13.11 16 17 O -0.37 -6.71 8.82 -40.81 -0.36 -7.07 16 18 C 0.08 1.11 4.85 37.16 0.18 1.29 16 19 C -0.08 -0.76 2.26 -90.81 -0.21 -0.97 16 20 H 0.10 1.05 8.01 -51.93 -0.42 0.64 16 21 C -0.14 -1.17 4.91 -27.15 -0.13 -1.30 16 22 C -0.11 -0.73 5.73 -26.92 -0.15 -0.89 16 23 C -0.60 -3.42 6.35 37.17 0.24 -3.18 16 24 S 2.42 20.33 5.31 -107.50 -0.57 19.76 16 25 O -0.93 -11.23 17.94 -57.81 -1.04 -12.27 16 26 O -0.95 -11.05 18.10 -57.81 -1.05 -12.09 16 27 C -0.60 -4.62 5.62 37.17 0.21 -4.41 16 28 H 0.29 6.46 8.29 -40.82 -0.34 6.13 16 29 H 0.12 2.96 6.59 -52.49 -0.35 2.62 16 30 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.10 1.93 7.61 -52.49 -0.40 1.53 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.10 1.00 7.52 -51.93 -0.39 0.61 16 37 H 0.09 0.61 8.01 -51.93 -0.42 0.19 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.14 0.98 8.14 -51.92 -0.42 0.56 16 42 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -33.54 358.93 -10.60 -44.13 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.64 Total: 4.25 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.69 Total: -23.79 kcal Atomic # 7 Polarization: -19.60 SS G_CDS: 0.62 Total: -18.98 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -2.70 Total: -44.54 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 16 Polarization: 20.33 SS G_CDS: -0.57 Total: 19.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.54 -10.60 -44.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791644966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.888 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds