Wall clock time and date at job start Tue Mar 31 2020 20:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48498 * 109.47235 * 239.99563 * 3 2 1 5 5 H 1.48500 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47121 * 119.99813 * 3 2 1 7 7 C 1.40292 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99688 * 170.76609 * 7 2 1 9 9 C 1.40861 * 120.00364 * 350.75707 * 7 2 1 10 10 C 1.40709 * 120.33102 * 325.83531 * 9 7 2 11 11 C 1.37600 * 119.88084 * 179.97438 * 10 9 7 12 12 C 1.38837 * 120.58874 * 0.02562 * 11 10 9 13 13 C 1.38200 * 120.68183 * 359.97438 * 12 11 10 14 14 C 1.39295 * 120.08472 * 359.97438 * 13 12 11 15 15 C 1.47286 * 120.28804 * 180.02562 * 14 13 12 16 16 O 1.21527 * 120.00448 * 174.20590 * 15 14 13 17 17 O 1.34814 * 119.99857 * 354.20961 * 15 14 13 18 18 C 1.45195 * 116.99724 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46978 * 179.97438 * 18 17 15 20 20 H 1.09003 * 109.38087 * 55.20636 * 19 18 17 21 21 C 1.52581 * 109.38306 * 295.52479 * 19 18 17 22 22 C 1.52595 * 110.64079 * 169.85355 * 21 19 18 23 23 C 1.53032 * 109.98282 * 69.98961 * 22 21 19 24 24 S 1.81676 * 108.99854 * 296.34547 * 23 22 21 25 25 O 1.42093 * 108.66442 * 299.97608 * 24 23 22 26 26 O 1.42095 * 108.66155 * 168.62989 * 24 23 22 27 27 C 1.53032 * 109.38636 * 174.99964 * 19 18 17 28 28 H 0.96995 * 119.99721 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.05561 * 0.03819 * 10 9 7 30 30 H 1.08005 * 119.70285 * 180.29496 * 11 10 9 31 31 H 1.07990 * 119.66050 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.95982 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.47399 * 299.99626 * 18 17 15 34 34 H 1.08997 * 109.47401 * 60.00303 * 18 17 15 35 35 H 1.09001 * 109.24394 * 290.15367 * 21 19 18 36 36 H 1.09005 * 109.24619 * 49.55815 * 21 19 18 37 37 H 1.09001 * 109.38751 * 309.82696 * 22 21 19 38 38 H 1.09005 * 109.29899 * 190.08864 * 22 21 19 39 39 H 1.09002 * 109.54783 * 176.49866 * 23 22 21 40 40 H 1.09000 * 109.63260 * 56.25418 * 23 22 21 41 41 H 1.09004 * 109.55227 * 303.66002 * 27 19 18 42 42 H 1.09001 * 109.55456 * 63.94968 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0940 1.6964 -1.2124 5 1 1.2751 2.7464 -0.0006 6 1 3.0939 1.6964 1.2126 7 6 2.0076 -1.2150 0.0005 8 1 3.0771 -1.2211 -0.1495 9 6 1.3170 -2.4269 0.1970 10 6 0.1989 -2.4774 1.0498 11 6 -0.4691 -3.6661 1.2346 12 6 -0.0498 -4.8203 0.5867 13 6 1.0453 -4.7978 -0.2560 14 6 1.7417 -3.6095 -0.4643 15 6 2.9090 -3.5803 -1.3620 16 8 3.4486 -2.5231 -1.6229 17 8 3.3790 -4.7263 -1.8942 18 6 4.5320 -4.6220 -2.7704 19 6 4.9181 -6.0145 -3.2732 20 1 4.0544 -6.4799 -3.7483 21 6 5.3680 -6.8720 -2.0941 22 6 5.5199 -8.3304 -2.5166 23 6 6.7267 -8.4829 -3.4452 24 16 6.4261 -7.5355 -4.9660 25 8 5.2585 -8.0447 -5.5956 26 8 7.6390 -7.4609 -5.7025 27 6 6.0528 -5.8900 -4.2925 28 1 -0.4849 0.8400 -0.0004 29 1 -0.1349 -1.5847 1.5575 30 1 -1.3299 -3.7006 1.8860 31 1 -0.5849 -5.7452 0.7429 32 1 1.3615 -5.7025 -0.7537 33 1 4.2867 -3.9839 -3.6193 34 1 5.3682 -4.1899 -2.2207 35 1 6.3253 -6.5030 -1.7261 36 1 4.6272 -6.8042 -1.2972 37 1 4.6186 -8.6517 -3.0387 38 1 5.6647 -8.9489 -1.6307 39 1 6.8658 -9.5353 -3.6927 40 1 7.6203 -8.1034 -2.9497 41 1 5.7459 -5.2262 -5.1007 42 1 6.9395 -5.4862 -3.8037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791644966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:00 Heat of formation + Delta-G solvation = -171.205405 kcal Electronic energy + Delta-G solvation = -26864.927792 eV Core-core repulsion = 22900.646919 eV Total energy + Delta-G solvation = -3964.280873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20467 -39.32436 -38.56878 -37.88387 -37.08079 -36.75931 -35.60252 -33.51952 -31.95940 -31.47496 -28.80519 -27.93505 -27.20536 -24.45020 -23.36746 -22.86636 -21.50714 -21.42606 -19.79191 -19.37418 -18.40821 -17.91264 -17.39137 -17.30141 -17.06999 -16.84479 -16.62622 -15.98600 -15.94880 -15.45664 -15.24562 -15.01564 -14.51812 -14.38569 -14.05785 -13.94184 -13.85658 -13.56764 -13.46140 -13.20985 -13.08808 -12.91389 -12.87365 -12.59032 -12.46753 -12.39102 -12.31583 -12.20151 -11.98872 -11.79159 -11.67567 -11.52800 -11.36579 -11.18957 -10.99252 -10.66581 -9.50452 -9.31429 -8.74670 -6.46031 -0.92649 0.34589 1.00366 1.33635 1.44915 1.50511 1.67499 2.01129 2.04721 2.17604 2.71927 2.72963 2.99841 3.47429 3.53614 3.64027 3.74101 3.80921 3.96759 4.10826 4.24599 4.33881 4.39673 4.43526 4.54723 4.61971 4.63372 4.68935 4.78918 4.86242 4.96938 5.06806 5.11918 5.19286 5.26968 5.29646 5.33554 5.53162 5.64758 5.81327 6.00670 6.07641 6.28773 6.62146 6.77813 6.87474 7.26642 8.22274 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.002784 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.069305 B =10055.135608 C =11249.793325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.259 1.259 6 H -0.255 1.255 7 C -0.457 4.457 8 H 0.085 0.915 9 C 0.120 3.880 10 C -0.176 4.176 11 C -0.084 4.084 12 C -0.238 4.238 13 C -0.037 4.037 14 C -0.274 4.274 15 C 0.506 3.494 16 O -0.546 6.546 17 O -0.359 6.359 18 C 0.069 3.931 19 C -0.071 4.071 20 H 0.098 0.902 21 C -0.141 4.141 22 C -0.110 4.110 23 C -0.581 4.581 24 S 2.428 3.572 25 O -0.978 6.978 26 O -0.982 6.982 27 C -0.599 4.599 28 H 0.293 0.707 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.141 0.859 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.594 -13.658 -2.351 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.183 1.183 6 H -0.179 1.179 7 C -0.485 4.485 8 H 0.103 0.897 9 C 0.117 3.883 10 C -0.196 4.196 11 C -0.102 4.102 12 C -0.257 4.257 13 C -0.055 4.055 14 C -0.277 4.277 15 C 0.357 3.643 16 O -0.439 6.439 17 O -0.277 6.277 18 C -0.006 4.006 19 C -0.090 4.090 20 H 0.116 0.884 21 C -0.179 4.179 22 C -0.148 4.148 23 C -0.713 4.713 24 S 2.615 3.385 25 O -0.975 6.975 26 O -0.979 6.979 27 C -0.728 4.728 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.172 0.828 40 H 0.181 0.819 41 H 0.159 0.841 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.603 -13.492 -3.399 17.494 hybrid contribution 0.178 1.554 0.372 1.608 sum 10.782 -11.938 -3.026 16.368 Atomic orbital electron populations 1.69715 1.08735 1.31151 1.34369 1.26841 0.95639 1.04460 0.91329 0.85271 0.78924 0.75746 0.79914 1.19669 1.18291 1.17859 1.20181 0.96727 0.91170 1.40381 0.89672 1.17814 0.91079 0.91701 0.87743 1.21293 0.99306 0.97416 1.01535 1.21253 0.98127 0.92762 0.98066 1.20844 1.01222 0.98566 1.05089 1.21157 0.93624 0.95654 0.95074 1.19114 1.02184 0.97465 1.08954 1.21326 0.83454 0.80999 0.78484 1.90718 1.59900 1.32240 1.61007 1.86508 1.46354 1.35171 1.59641 1.23080 0.86589 0.98206 0.92709 1.20846 0.97489 0.94795 0.95916 0.88396 1.21845 1.04330 0.94168 0.97508 1.21319 0.95749 0.96828 1.00883 1.30076 1.08895 1.15544 1.16813 1.07502 0.73683 0.78689 0.78628 1.93543 1.50763 1.78540 1.74649 1.93550 1.47188 1.86681 1.70458 1.30299 1.08394 1.23870 1.10227 0.89613 0.87643 0.85740 0.84818 0.85093 0.92322 0.90931 0.88622 0.89745 0.89997 0.87171 0.82823 0.81942 0.84120 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.91 11.14 21.88 0.24 -41.66 16 2 C 0.03 1.72 5.25 85.37 0.45 2.17 16 3 Si 0.98 39.61 29.57 68.60 2.03 41.64 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.46 -25.28 7.67 23.41 0.18 -25.10 16 8 H 0.09 4.89 5.93 -2.91 -0.02 4.87 16 9 C 0.12 6.44 5.51 -21.10 -0.12 6.32 16 10 C -0.18 -8.78 8.62 22.72 0.20 -8.59 16 11 C -0.08 -3.50 10.01 22.26 0.22 -3.28 16 12 C -0.24 -9.21 10.03 22.40 0.22 -8.98 16 13 C -0.04 -1.52 9.60 22.52 0.22 -1.30 16 14 C -0.27 -13.39 5.92 -19.71 -0.12 -13.50 16 15 C 0.51 23.55 7.84 70.20 0.55 24.10 16 16 O -0.55 -28.34 13.39 19.75 0.26 -28.08 16 17 O -0.36 -13.01 8.82 -57.26 -0.51 -13.52 16 18 C 0.07 1.93 4.85 71.98 0.35 2.28 16 19 C -0.07 -1.33 2.26 -10.92 -0.02 -1.36 16 20 H 0.10 1.93 8.01 -2.39 -0.02 1.91 16 21 C -0.14 -2.01 4.91 30.32 0.15 -1.86 16 22 C -0.11 -1.09 5.73 30.47 0.17 -0.92 16 23 C -0.58 -4.40 6.35 71.99 0.46 -3.94 16 24 S 2.43 37.23 5.31 -56.49 -0.30 36.93 16 25 O -0.98 -23.13 17.94 -127.39 -2.29 -25.42 16 26 O -0.98 -21.90 18.10 -127.39 -2.31 -24.21 16 27 C -0.60 -8.28 5.62 71.99 0.40 -7.88 16 28 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 29 H 0.11 5.44 6.59 -2.91 -0.02 5.42 16 30 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.13 4.13 8.06 -2.92 -0.02 4.11 16 32 H 0.13 4.56 7.61 -2.91 -0.02 4.54 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 36 H 0.08 1.51 7.52 -2.38 -0.02 1.49 16 37 H 0.08 0.94 8.01 -2.39 -0.02 0.92 16 38 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.16 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -76.25 358.93 1.49 -74.76 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.04 Total: 21.39 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 3.31 Total: -41.83 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.24 Total: -41.66 kcal Atomic # 8 Polarization: -86.39 SS G_CDS: -4.83 Total: -91.22 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Atomic # 16 Polarization: 37.23 SS G_CDS: -0.30 Total: 36.93 kcal Total: -76.25 1.49 -74.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791644966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.448 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds