Wall clock time and date at job start Tue Mar 31 2020 20:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99302 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99876 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00114 * 197.86007 * 7 2 1 9 9 C 1.41436 * 120.00211 * 17.86118 * 7 2 1 10 10 C 1.40792 * 120.17621 * 204.39095 * 9 7 2 11 11 C 1.37718 * 120.05257 * 180.02562 * 10 9 7 12 12 C 1.38353 * 120.41757 * 359.97438 * 11 10 9 13 13 C 1.39924 * 120.35413 * 0.02562 * 12 11 10 14 14 C 1.47768 * 120.03227 * 180.02562 * 13 12 11 15 15 O 1.21464 * 120.00223 * 179.97438 * 14 13 12 16 16 O 1.34704 * 120.00116 * 359.97438 * 14 13 12 17 17 C 1.45201 * 117.00270 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46958 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.38258 * 304.78500 * 18 17 16 20 20 C 1.52582 * 109.38335 * 64.47464 * 18 17 16 21 21 C 1.52590 * 110.64016 * 190.14241 * 20 18 17 22 22 C 1.53041 * 109.98421 * 290.01492 * 21 20 18 23 23 S 1.81664 * 109.00034 * 63.64895 * 22 21 20 24 24 O 1.42104 * 108.66391 * 191.37057 * 23 22 21 25 25 O 1.42099 * 108.66641 * 60.02965 * 23 22 21 26 26 C 1.53033 * 109.37999 * 184.99933 * 18 17 16 27 27 C 1.39091 * 119.93758 * 0.02562 * 13 12 11 28 28 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.97524 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.79229 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.82234 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.46958 * 299.99666 * 17 16 14 33 33 H 1.08996 * 109.47082 * 60.00129 * 17 16 14 34 34 H 1.08997 * 109.24283 * 310.43971 * 20 18 17 35 35 H 1.08999 * 109.24703 * 69.84764 * 20 18 17 36 36 H 1.08995 * 109.38442 * 169.85926 * 21 20 18 37 37 H 1.08999 * 109.30031 * 50.11396 * 21 20 18 38 38 H 1.09000 * 109.54806 * 303.78397 * 22 21 20 39 39 H 1.09004 * 109.62606 * 183.55082 * 22 21 20 40 40 H 1.09000 * 109.55580 * 296.04836 * 26 18 17 41 41 H 1.09005 * 109.55604 * 56.33804 * 26 18 17 42 42 H 1.08005 * 120.20036 * 179.72812 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3518 -2.4074 -0.3746 10 6 1.8268 -3.6500 0.0864 11 6 1.1864 -4.8126 -0.2809 12 6 0.0742 -4.7700 -1.1027 13 6 -0.4126 -3.5445 -1.5708 14 6 -1.6014 -3.5073 -2.4477 15 8 -2.0238 -2.4432 -2.8534 16 8 -2.2167 -4.6535 -2.7973 17 6 -3.3781 -4.5413 -3.6615 18 6 -3.9371 -5.9364 -3.9482 19 1 -3.1484 -6.5640 -4.3631 20 6 -4.4437 -6.5557 -2.6490 21 6 -4.7753 -8.0315 -2.8502 22 6 -6.0212 -8.1728 -3.7277 23 16 -5.6636 -7.4967 -5.3755 24 8 -6.8833 -7.3864 -6.0963 25 8 -4.5831 -8.2256 -5.9415 26 6 -5.0826 -5.8270 -4.9571 27 6 0.2235 -2.3614 -1.2099 28 1 -0.4850 0.8400 -0.0004 29 1 2.6942 -3.6916 0.7285 30 1 1.5546 -5.7635 0.0748 31 1 -0.4204 -5.6877 -1.3851 32 1 -4.1406 -3.9380 -3.1688 33 1 -3.0888 -4.0665 -4.5991 34 1 -3.6746 -6.4616 -1.8824 35 1 -5.3401 -6.0272 -2.3246 36 1 -4.9605 -8.4960 -1.8816 37 1 -3.9338 -8.5271 -3.3342 38 1 -6.8478 -7.6220 -3.2789 39 1 -6.2895 -9.2256 -3.8158 40 1 -5.9009 -5.2551 -4.5194 41 1 -4.7282 -5.3275 -5.8588 42 1 -0.1461 -1.4135 -1.5724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791732764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:14 Heat of formation + Delta-G solvation = -153.295746 kcal Electronic energy + Delta-G solvation = -26471.529988 eV Core-core repulsion = 22508.025736 eV Total energy + Delta-G solvation = -3963.504252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.97854 -38.21324 -37.40170 -37.07550 -36.35436 -35.63631 -33.81894 -32.89383 -30.42736 -29.57160 -28.18868 -27.00213 -25.40186 -23.35772 -22.61828 -21.06470 -20.81376 -19.92944 -19.15903 -17.92421 -17.24683 -16.84607 -16.33323 -16.13180 -16.01715 -15.85434 -15.31885 -15.01203 -14.72040 -14.70455 -14.03731 -13.54808 -13.46649 -13.35459 -13.05722 -12.96043 -12.72043 -12.47481 -12.43197 -12.34289 -11.84060 -11.77374 -11.71996 -11.49935 -11.27253 -11.19891 -11.14619 -11.01682 -10.82000 -10.56797 -10.47911 -10.29660 -10.25050 -9.78705 -9.55554 -9.30321 -7.81292 -7.62284 -6.89283 -4.49766 -0.34682 1.90309 2.26635 2.71555 3.01982 3.03111 3.06815 3.08860 3.30288 3.52181 3.60558 3.85506 4.08759 4.11285 4.29204 4.35921 4.51193 4.52847 4.66521 4.89022 5.05433 5.12710 5.22145 5.26699 5.38223 5.47646 5.55409 5.56232 5.66715 5.87858 5.90935 6.07236 6.33110 6.56432 6.84264 6.88008 6.91615 7.10683 7.24346 7.61461 7.68630 7.84725 8.03898 8.38249 8.46175 8.70684 8.72804 10.06027 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.002298 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.427550 B =12182.193760 C =12868.726968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.194 4.194 13 C -0.115 4.115 14 C 0.513 3.487 15 O -0.517 6.517 16 O -0.354 6.354 17 C 0.075 3.925 18 C -0.076 4.076 19 H 0.105 0.895 20 C -0.140 4.140 21 C -0.109 4.109 22 C -0.603 4.603 23 S 2.420 3.580 24 O -0.944 6.944 25 O -0.934 6.934 26 C -0.603 4.603 27 C -0.090 4.090 28 H 0.284 0.716 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 -11.827 -4.966 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.122 4.122 12 C -0.214 4.214 13 C -0.117 4.117 14 C 0.360 3.640 15 O -0.407 6.407 16 O -0.272 6.272 17 C 0.000 4.000 18 C -0.095 4.095 19 H 0.123 0.877 20 C -0.177 4.177 21 C -0.148 4.148 22 C -0.732 4.732 23 S 2.603 3.397 24 O -0.941 6.941 25 O -0.931 6.931 26 C -0.731 4.731 27 C -0.109 4.109 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.449 -11.757 -5.941 17.453 hybrid contribution 0.066 1.327 0.705 1.504 sum -11.382 -10.430 -5.236 16.302 Atomic orbital electron populations 1.69783 1.07631 1.29752 1.33915 1.25973 0.94784 1.01657 0.92201 0.86216 0.80919 0.80678 0.78714 1.18270 1.19549 1.19877 1.19610 0.98309 0.90912 1.39915 0.89866 1.17549 0.91126 0.92637 0.89435 1.21194 1.03167 0.92714 1.05012 1.20513 0.96113 0.96922 0.98611 1.20547 1.00234 0.95247 1.05377 1.18820 0.94879 0.95931 1.02032 1.21889 0.83061 0.80798 0.78251 1.90769 1.65173 1.31213 1.53532 1.86560 1.41715 1.36282 1.62643 1.22834 0.86881 0.95923 0.94394 1.20858 0.95945 0.98028 0.94640 0.87668 1.21817 1.03410 0.94485 0.98028 1.21292 0.94686 0.97629 1.01145 1.30242 1.07937 1.13350 1.21710 1.07954 0.75517 0.78288 0.77979 1.93602 1.45241 1.86206 1.69100 1.93604 1.55097 1.69426 1.74973 1.30333 1.08929 1.24447 1.09405 1.21652 0.96538 0.96017 0.96714 0.90453 0.88328 0.88509 0.87835 0.91007 0.91029 0.88115 0.90604 0.89180 0.89446 0.84864 0.84802 0.84428 0.84283 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.10 10.96 55.55 0.61 -19.49 16 2 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -11.64 9.05 -37.73 -0.34 -11.98 16 8 H 0.08 2.01 7.91 -52.48 -0.41 1.59 16 9 C 0.09 2.42 5.57 -106.88 -0.60 1.83 16 10 C -0.20 -4.59 9.78 -38.81 -0.38 -4.97 16 11 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 12 C -0.19 -4.06 9.62 -38.91 -0.37 -4.43 16 13 C -0.12 -2.66 5.87 -105.05 -0.62 -3.28 16 14 C 0.51 10.88 7.90 34.63 0.27 11.15 16 15 O -0.52 -12.09 16.12 -19.24 -0.31 -12.40 16 16 O -0.35 -5.96 8.80 -40.50 -0.36 -6.31 16 17 C 0.08 0.96 4.84 37.16 0.18 1.14 16 18 C -0.08 -0.68 2.26 -90.81 -0.21 -0.89 16 19 H 0.11 0.96 8.00 -51.93 -0.42 0.54 16 20 C -0.14 -1.08 4.91 -27.16 -0.13 -1.21 16 21 C -0.11 -0.67 5.73 -26.92 -0.15 -0.82 16 22 C -0.60 -3.10 6.35 37.18 0.24 -2.86 16 23 S 2.42 18.85 5.31 -107.50 -0.57 18.28 16 24 O -0.94 -10.51 18.10 -57.81 -1.05 -11.56 16 25 O -0.93 -10.65 17.93 -57.81 -1.04 -11.68 16 26 C -0.60 -4.09 5.62 37.17 0.21 -3.88 16 27 C -0.09 -2.31 8.23 -38.43 -0.32 -2.62 16 28 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.89 7.59 -52.48 -0.40 1.50 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.93 7.52 -51.93 -0.39 0.54 16 35 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.56 8.00 -51.93 -0.42 0.14 16 38 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.14 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.14 3.72 5.75 -52.48 -0.30 3.41 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -33.45 363.28 -10.67 -44.12 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.70 Total: 4.09 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -2.70 Total: -23.68 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.61 Total: -19.49 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -2.75 Total: -41.95 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: 18.85 SS G_CDS: -0.57 Total: 18.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.45 -10.67 -44.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791732764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.175 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds