Wall clock time and date at job start Tue Mar 31 2020 20:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99302 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99876 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00114 * 197.86007 * 7 2 1 9 9 C 1.41436 * 120.00211 * 17.86118 * 7 2 1 10 10 C 1.40792 * 120.17621 * 204.39095 * 9 7 2 11 11 C 1.37718 * 120.05257 * 180.02562 * 10 9 7 12 12 C 1.38353 * 120.41757 * 359.97438 * 11 10 9 13 13 C 1.39924 * 120.35413 * 0.02562 * 12 11 10 14 14 C 1.47768 * 120.03227 * 180.02562 * 13 12 11 15 15 O 1.21464 * 120.00223 * 179.97438 * 14 13 12 16 16 O 1.34704 * 120.00116 * 359.97438 * 14 13 12 17 17 C 1.45201 * 117.00270 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46958 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.38258 * 304.78500 * 18 17 16 20 20 C 1.52582 * 109.38335 * 64.47464 * 18 17 16 21 21 C 1.52590 * 110.64016 * 190.14241 * 20 18 17 22 22 C 1.53041 * 109.98421 * 290.01492 * 21 20 18 23 23 S 1.81664 * 109.00034 * 63.64895 * 22 21 20 24 24 O 1.42104 * 108.66391 * 191.37057 * 23 22 21 25 25 O 1.42099 * 108.66641 * 60.02965 * 23 22 21 26 26 C 1.53033 * 109.37999 * 184.99933 * 18 17 16 27 27 C 1.39091 * 119.93758 * 0.02562 * 13 12 11 28 28 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.97524 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.79229 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.82234 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.46958 * 299.99666 * 17 16 14 33 33 H 1.08996 * 109.47082 * 60.00129 * 17 16 14 34 34 H 1.08997 * 109.24283 * 310.43971 * 20 18 17 35 35 H 1.08999 * 109.24703 * 69.84764 * 20 18 17 36 36 H 1.08995 * 109.38442 * 169.85926 * 21 20 18 37 37 H 1.08999 * 109.30031 * 50.11396 * 21 20 18 38 38 H 1.09000 * 109.54806 * 303.78397 * 22 21 20 39 39 H 1.09004 * 109.62606 * 183.55082 * 22 21 20 40 40 H 1.09000 * 109.55580 * 296.04836 * 26 18 17 41 41 H 1.09005 * 109.55604 * 56.33804 * 26 18 17 42 42 H 1.08005 * 120.20036 * 179.72812 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3518 -2.4074 -0.3746 10 6 1.8268 -3.6500 0.0864 11 6 1.1864 -4.8126 -0.2809 12 6 0.0742 -4.7700 -1.1027 13 6 -0.4126 -3.5445 -1.5708 14 6 -1.6014 -3.5073 -2.4477 15 8 -2.0238 -2.4432 -2.8534 16 8 -2.2167 -4.6535 -2.7973 17 6 -3.3781 -4.5413 -3.6615 18 6 -3.9371 -5.9364 -3.9482 19 1 -3.1484 -6.5640 -4.3631 20 6 -4.4437 -6.5557 -2.6490 21 6 -4.7753 -8.0315 -2.8502 22 6 -6.0212 -8.1728 -3.7277 23 16 -5.6636 -7.4967 -5.3755 24 8 -6.8833 -7.3864 -6.0963 25 8 -4.5831 -8.2256 -5.9415 26 6 -5.0826 -5.8270 -4.9571 27 6 0.2235 -2.3614 -1.2099 28 1 -0.4850 0.8400 -0.0004 29 1 2.6942 -3.6916 0.7285 30 1 1.5546 -5.7635 0.0748 31 1 -0.4204 -5.6877 -1.3851 32 1 -4.1406 -3.9380 -3.1688 33 1 -3.0888 -4.0665 -4.5991 34 1 -3.6746 -6.4616 -1.8824 35 1 -5.3401 -6.0272 -2.3246 36 1 -4.9605 -8.4960 -1.8816 37 1 -3.9338 -8.5271 -3.3342 38 1 -6.8478 -7.6220 -3.2789 39 1 -6.2895 -9.2256 -3.8158 40 1 -5.9009 -5.2551 -4.5194 41 1 -4.7282 -5.3275 -5.8588 42 1 -0.1461 -1.4135 -1.5724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791732764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:13 Heat of formation + Delta-G solvation = -174.308600 kcal Electronic energy + Delta-G solvation = -26472.441173 eV Core-core repulsion = 22508.025736 eV Total energy + Delta-G solvation = -3964.415437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49628 -39.37952 -38.72485 -37.95263 -37.10072 -36.98737 -35.61537 -33.56872 -32.17541 -31.35327 -28.84987 -27.93350 -27.17993 -24.81057 -23.39400 -22.84171 -21.56649 -21.52422 -19.85315 -19.60239 -18.31906 -17.93068 -17.51527 -17.40228 -17.20579 -16.67116 -16.61225 -16.41164 -15.99156 -15.51477 -15.22297 -15.13350 -14.60503 -14.36696 -14.17441 -14.04365 -13.87536 -13.67983 -13.49302 -13.22723 -13.10056 -13.00282 -12.81893 -12.58324 -12.54733 -12.39893 -12.26654 -12.20451 -12.04192 -11.83237 -11.71703 -11.54087 -11.51029 -11.27704 -11.09822 -10.97805 -9.60984 -9.43681 -8.69368 -6.39638 -0.94338 0.13958 0.96925 1.37690 1.44927 1.53336 1.55360 1.80619 1.83576 2.18670 2.71320 2.72186 2.96763 3.43696 3.50424 3.63438 3.65009 3.79139 3.92904 4.04353 4.09969 4.24008 4.31556 4.43498 4.50227 4.58959 4.64561 4.66714 4.77225 4.83913 4.93321 5.05584 5.08789 5.14307 5.25655 5.27579 5.28763 5.36379 5.45844 5.82640 5.90379 6.01825 6.23897 6.53608 6.81799 6.87056 6.89422 8.28246 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.002298 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.427550 B =12182.193760 C =12868.726968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.252 1.252 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.494 4.494 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.204 4.204 11 C -0.100 4.100 12 C -0.177 4.177 13 C -0.129 4.129 14 C 0.517 3.483 15 O -0.548 6.548 16 O -0.343 6.343 17 C 0.064 3.936 18 C -0.072 4.072 19 H 0.102 0.898 20 C -0.144 4.144 21 C -0.110 4.110 22 C -0.582 4.582 23 S 2.425 3.575 24 O -0.982 6.982 25 O -0.977 6.977 26 C -0.599 4.599 27 C -0.125 4.125 28 H 0.287 0.713 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.144 0.856 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 -13.724 -4.110 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.523 4.523 8 H 0.104 0.896 9 C 0.062 3.938 10 C -0.223 4.223 11 C -0.117 4.117 12 C -0.197 4.197 13 C -0.130 4.130 14 C 0.365 3.635 15 O -0.440 6.440 16 O -0.260 6.260 17 C -0.010 4.010 18 C -0.091 4.091 19 H 0.120 0.880 20 C -0.181 4.181 21 C -0.148 4.148 22 C -0.715 4.715 23 S 2.613 3.387 24 O -0.979 6.979 25 O -0.975 6.975 26 C -0.728 4.728 27 C -0.144 4.144 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.180 0.820 39 H 0.171 0.829 40 H 0.182 0.818 41 H 0.162 0.838 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.135 -13.695 -5.120 19.001 hybrid contribution 0.208 1.709 0.444 1.778 sum -11.927 -11.986 -4.676 17.544 Atomic orbital electron populations 1.69869 1.09189 1.30655 1.35402 1.26830 0.95423 1.04910 0.91289 0.85154 0.79698 0.76138 0.78754 1.17492 1.19571 1.18918 1.19876 0.98673 0.92003 1.41734 0.89582 1.17903 0.91717 0.94061 0.90099 1.21508 1.03536 0.92607 1.04687 1.20974 0.95302 0.97982 0.97488 1.20979 0.99683 0.95433 1.03572 1.19088 0.95531 0.96082 1.02336 1.21637 0.82788 0.81355 0.77753 1.90748 1.65996 1.32610 1.54639 1.86516 1.42802 1.33786 1.62890 1.23272 0.85485 0.98766 0.93495 1.20865 0.96605 0.95485 0.96150 0.88010 1.21869 1.03831 0.95864 0.96520 1.21319 0.94893 0.96420 1.02195 1.30090 1.08535 1.14727 1.18117 1.07560 0.74018 0.78102 0.79059 1.93555 1.46250 1.86738 1.71360 1.93547 1.56300 1.70539 1.77086 1.30296 1.08936 1.24290 1.09251 1.21456 0.98222 0.95943 0.98818 0.90192 0.86832 0.84106 0.84518 0.90419 0.91316 0.89603 0.88581 0.87239 0.89920 0.81985 0.82883 0.81763 0.83794 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.26 10.96 21.82 0.24 -44.02 16 2 C 0.03 1.54 5.14 85.25 0.44 1.97 16 3 Si 0.98 38.26 29.59 68.60 2.03 40.29 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 7 C -0.49 -25.92 9.05 23.47 0.21 -25.71 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 9 C 0.06 3.38 5.57 -21.32 -0.12 3.26 16 10 C -0.20 -9.15 9.78 22.77 0.22 -8.93 16 11 C -0.10 -3.85 10.01 22.17 0.22 -3.62 16 12 C -0.18 -7.02 9.62 22.71 0.22 -6.80 16 13 C -0.13 -6.00 5.87 -20.14 -0.12 -6.12 16 14 C 0.52 22.10 7.90 70.34 0.56 22.66 16 15 O -0.55 -26.42 16.12 19.95 0.32 -26.10 16 16 O -0.34 -11.19 8.80 -56.14 -0.49 -11.68 16 17 C 0.06 1.57 4.84 71.98 0.35 1.92 16 18 C -0.07 -1.16 2.26 -10.92 -0.02 -1.18 16 19 H 0.10 1.71 8.00 -2.39 -0.02 1.70 16 20 C -0.14 -1.78 4.91 30.32 0.15 -1.63 16 21 C -0.11 -0.96 5.73 30.47 0.17 -0.78 16 22 C -0.58 -3.83 6.35 72.00 0.46 -3.37 16 23 S 2.43 34.00 5.31 -56.49 -0.30 33.70 16 24 O -0.98 -20.85 18.10 -127.40 -2.31 -23.15 16 25 O -0.98 -21.80 17.93 -127.40 -2.28 -24.09 16 26 C -0.60 -6.95 5.62 71.99 0.40 -6.54 16 27 C -0.12 -6.67 8.23 23.02 0.19 -6.48 16 28 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 29 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.14 4.48 7.59 -2.91 -0.02 4.46 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.36 7.52 -2.39 -0.02 1.34 16 35 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 36 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.84 8.00 -2.39 -0.02 0.82 16 38 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 6.16 5.75 -2.91 -0.02 6.14 16 Total: -1.00 -76.40 363.28 1.57 -74.83 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 1.03 Total: 21.58 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.33 Total: -41.35 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.24 Total: -44.02 kcal Atomic # 8 Polarization: -80.26 SS G_CDS: -4.76 Total: -85.02 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 16 Polarization: 34.00 SS G_CDS: -0.30 Total: 33.70 kcal Total: -76.40 1.57 -74.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791732764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.476 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds